Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100            <---------ANAC46              ------>ZmHOX2a(1)          <---------YAB1                ===================HOX2a_HOX2a        <-----------GT1                <---------ANAC58   <---------------AGL15              <-------    <---------YAB1                     --------->TOE2(3)  --------->TOE1(3)       -------->P <-------    <---------AHL20(2)                 <---------ANAC58   --------->TOE2(3)       ------>MYB46(1)    --------->AHL20(2)             <---------GLK1(1)      --------------->AGL15   ------>MYB83  <---- ----->ANAC58                 --------->TOE2(3)          ----------------->AGL2 <---------MYB46(2)  < ----->ANAC58               --------->ARR11(3)      <------ZmHOX2a(2)           <---------MYB111(1) - ----->ANAC46               <---------ARR11(3)--------->At4g35610       --------->ANAC46    <--------   agctatattattacgagtagtcatgaacaataccttgaattccttatcaactggatcaaaccctaaatagctatacgaatcacctactctaagttcaggt  11022900 <------ZmHOX2a(2) ====================HOX2a_HOX2a --TOE2(3)      ----------->HVH21 --TOE1(3)     <-----------HVH21                            <---------ANAC46       --------->WOX13(1) ----P   <----------DOF2                                 <----------DOF2          <---------AHL20(2) ---------ARR11(3)         <---------ANAC55(2)  ------>ZmHOX2a(1)                 --------->AHL20(2) -------->ARR11(3)     <-----------HVH21       --------->TOE2(3)   ------->TEIL  --------->AHL20(2) ---RAV1(2)   ------>ZmHOX2a(1)        <----------DOF2------>ZmHOX2a(1)     --------->YAB1   aagatcacatactttcctgtgagagggtcacataaaacatgctttgcatcctcatcctcctttcggatgcacataccatcaaaataaatcaaaccagagg  11023000                 <---------ANAC58                 <---------ANAC58                     <------ZmHOX2a(1)                 <---------ANAC46                    --------->At4g35610              <---------WOX13(1)                     <---------At4g35610            <--------ATHB1                         <-----------RAV1(2)            --------->ATHB12                  --------->ARR14(2)                           <---------ANAC58            --------->ATHB51                  <---------ARR14(2)                           <---------ANAC58            <---------ICU4         <---------------AGL15                                   <---------ANAC46           <---------YAB1          --------------->AGL15                    <---------GLK1(2)           --------->ICU4         <-----------------AGL3                    <---------ARR14(2)  -----         --------->YAB1  <----------DOF2     <---------GLK1(1)              --------->ARR14(2)  <----   cataactacaagaataattgcttatgcctttagaaaacttcatatggaaatcggcaggagacaacttattctcacatggattctgagactgaggcgttga  11023100                                          --------->ALFIN1                                        <---------ANAC46                                        --------->O2                                        <---------bZIP60(2)                                        <---------ANAC58                                        <---------ANAC58          <---------MYB55(2)            --------->TGA1a          --------->MYB46(3)  --------->WOX13(1)         --------->ANAC46<---------ZAT18<---------O2           --------->HSFB2a(2)       <---------ALFIN1  --------->ZAT18<---------TGA1a        <---------HSFB2a(2)    --------->AtMYB61--------------->AtSPL8        <---------ANAC46         --------->At5g28300 ===== ------>GT1   --------->DEAR3(1)       <-----------------------TaNAC69(2)  ----------->GT1      <---- -----ANAC46<---------At5g28300 <---------ATHB12 ------->TEIL--------->STY1(2)             <---------ANAC46   gtaaaacctccactcaccgtcttgttgtacaccaattaagagacgtggacgagccttggaccttgctagaaacaactcggtgaaaacttgatggcgaagg  11023200            <----------DOF2           <---------ANAC46           <---------ANAC58           <---------ANAC58     --------->ANAC58   ------>ZmHOX2a(2)            --------->ANAC58  <---------GLK1(1)             --------->ANAC46                                         ------>ZmHOX2a(2)  --------->GLK1(1)          --------->O2                                     <------ZmHOX2a(2) ------->TEIL               ------>NtERF2                                    --------->ARR11(3) <---------ARR14(2)        <---------ALFIN1                                  <---------ARR11(3) <---------ARR11(3)      ------->GAMYB                             <---------ANAC55(2)  <------ZmHOX2a(2) --------->ARR11(3)     --------->ANAC46                       --------->GLK1(2)--------->KAN4(2) --------->ARR14(2)--------->ANAC46           <---------ANAC58 --------->ARR11(3)      <---------ARR14(2) <---------AGP1    --------->ANAC58           <---------ANAC46 --------->ARR14(2)      --------->ARR14(2) =========HOX2a_HOX2a --------->MYB52(1)      <---------ANAC58 <---------ARR11(3)   <---------HSFB2a(2) --ZmHOX2a(1)      --------->ANAC58 <---------At4g35610        <---------ARR14(2)  <---------LBD16   atggatctccattgcttttacacacaacgacacctcgcaactgatattgctggtaatctcgagagtatctcgtaaatgagatcattcgggatccaattct  11023300                                      ------>ZmHOX2a(2)                                     --------->CCA1(2)                                     <------ZmHOX2a(2)                                    --------->ARR11(3)                                    --------->GLK1(2)                                    <---------ARR11(3)                                    --------->ARR14(3)                                    <---------AGP1                                    <---------ARR14(2)                                    --------->ARR14(2)             <---------ARR14(2)     <---------ARR14(3)             --------->ARR14(2)   ----------->ARR10        ------>MYB83          <---------ANAC58    <------NtERF2                --------->MYB52(1)                   <----          <---------ANAC46  <---------DEAR3(1)             ------>MYB46(1)                      -----          <---------ANAC58 <---------ORA47(1)            <---------MYB46(2)            --------->ARR14(2)        --------->LBD16    --------->SPL7                <---------MYB111(1)           <---------ARR14(2)       ------->GAMYB     <---------SPL7----------->GT1   <---------MYB59            <---------ANAC46      <---------LBD16  <---------At4g35610    <-----------ARR10                   <---------MYB46(3)      --------->DEAR3(2) ----------->HVH21    --------->GLK1(2)                  <---------AtMYB61---    <-----------GT1    --------->At4g35610    --------->ARR11(3)                 <---------DEAR3(1) *TSS --------->MYB46(3)------>ZmHOX2a(2)     <---------ARR11(3)                 --------->ALFIN1 ---   tcattttaaccggcgtattttggtgatcggacggcgaagatctgtgaaaatctattcgacctaactagatgatgacattagaggtggtggatttgaaacc  11023400         --------->TOE2(3)       ------>MYB46(1)                                                            --------->AHL20(2)       ------>MYB83                                                               --------->YAB1     ------->GAMYB                                                              --------->AHL20(2)    --------->MYB46(3)                                                         --------->YAB1  <-----------GT1       <----------DOF2                                ----------->GT1       -------- -----MYB59    --------->AHL20(2)                                      ------>ZmHOX2a(2)<---------AHL20(2) ---->TOE2(3)  <---------AHL20(2)                               --------->ALFIN1--------->AHL20(1) --->MYB83------>ZmHOX2a(1)  <---------ZAT6                  --------->DAG2  <---------AHL20(2) --->MYB46(1) <---------AHL20(2)<---------YAB1              ---------->DOF2  --------->AHL20(2)  ----   taattaaccatcctaatttatatgggctttagtgttgatagaaaattgttgtccaaaaaaaaaaaagtgttgatcgtaaaaaaataatatttcaatgaca  11023500                                                        <---------At4g35610                                                       <---------TOE1(1)                                             --------->AHL20(2)                                           <---------ARR11(3)                                <---------AHL20(2)     <---------TOE2(1)                      --------->AHL20(2) --------->ANAC58    ----------->GT1          <---------At4g35610   --------->AHL20(2) <------MYB83  <---------AHL20(2) --------->AHL20(2)  --------->ANAC58   <---------TOE2(3)            <---------ANAC58 --------->AHL20(2)--------->YAB1        ----------->GT1--------->At4g35610              <---------ANAC58 ->YAB1   <-------GAMYB      --------->AHL20(2)    <------MYB46(1)             --------->ARR11(3) ------->GT1<---------ETT(2)--------->AHL20(2)    --------->MYB59          ---------->DOF2   agataaaatttctgttgacaaaaataaaaaataaaaaaatggcaagataaatttggtccgatgaggtttaaaaaaaaaaaagaaattgatggcttcatat  11023600                                                                   <---------WOX13(1)                                                                 -------->HAHB4                                                                 --------->ATHB12         <---------AHL20(2)                                      <--------ATHB1     --------->ATHB51                            --------->ZAT14 <---------ICU4     <---------ICU4                        <-----------GT1    --------->YAB1     <---------AHL20(2)             --------->AHL20(2)        <---------ICU4     --------->AHL20(2)             <---------AHL20(2)       <---------YAB1                 ---------    --------->ICU4               --------->AHL20(1)          --------->ICU4                 <--------    <---------YAB1               <---------AHL20(1)        --------->YAB1                   ---------  --------->YAB1                --------->AHL20(2)        <---------YAB1                    <--------  <---------ICU4            --------->AHL20(2)   <---------ZAT14<---------YAB1       ---------->DOF2 --------->ICU4    ----------->GT1--------->AHL20(2)    <---------CCA1(2)  --------->MYB46(3)       - <---------YAB1 <---------ZAT6--------->AHL20(2) <---------ZAT18--------->ICU4 --------->ZAT6<-------   ttgataattattttcttagtgttgataaaaaaaaatatatatatatcacagttcacacatatcataatgattgatgaacaaacactaaaaagaatatttt  11023700                                               <---------AHL20(2)                      <---------ICU4                                          <---------YAB1                               <--------ATHB1      <----------DOF2               <---------AHL20(2)                                 --------->YAB1  --------->DAG2                    <---------AHL20(1)                                --------->ICU4 >AHL20(1)                      <---------AHL20(2) ----------->GT1                    <---------ATHB12 -AHL20(1)                <---------MYB46(3)  --------->AHL20(2)                    --------->YAB1 >ARR11(3)               <--------P --------->AHL20(2)                        --------->ZAT6 -ARR11(3)             <---------MYB46(3)--------->AHL20(2)                <----------DOF2  <-------- --------->DOF2       <---------ATHB12 <---------YAB1     --------->AHL20(2)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3) --YAB1     <xxxxxxxxxxxxxxxxsmallRNA(i) <---------AHL20(2)         --------->GLK1(1) <---------ATHB51   tgaaaaggctttagaccatctccaatggttgtttttattttatttttataaaatagaaaaaaaaatagagatttctactttcactacaataattctttaa  11023800  Previous    Next  AGI:  At1g30940.1    Description:  pseudogene, F-box protein -related, contains TIGRfam:TIGR01640 F-box protein interaction domain Range:  from: 11021965    to: 11023301    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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