Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                          <---------AHL20(2)                 --------->YAB1                                                       --------->ANAC58                <---------YAB1                                                        --------->ANAC55(2)                <---------AHL20(2)                                                    <---------ANAC55(2)               --------->AHL20(2)                                                 --------->ANAC55(2) ->TEIL      <---------AHL20(2)                        <---------AHL20(2)         <---------ANAC55(2) -ANAC55(2) --------->AHL20(2)           <---------AHL20(2)                 --------->AHL20(2) -YAB1     <---------YAB1                --------->AHL20(2)         <---------TOE2(3) ----------->GT1 -ANAC46 <---------ZAT6  <---------ARR14(2)     <-----------GT1  --------->AHL20(2)   --------->ANAC58   attagttcttagtattatataatagcatattgggctattacatttattttttactattttaaaacaatttaagaaaaatgaattaagtaagtaatttgtg  10881200                              <------NtERF2                             ------>NtERF2                            <---------ANAC58                                                       --                            <---------ANAC46                                                       <-                            <---------ANAC58                                                      ---                           --------->ATERF1(1)                                                  <----                           <------NtERF2                                                     <-------                          <---------ATERF1(1)                                                --------                          ------>NtERF2                                                    --------->MYB55(2)                <---------------AGL15                                 --------->At4g35610  <---------MYB46(3)                <----------DOF2    <-----------GT1                    ----------->GT1   <------MYB83        <---------ANAC58  --------->ABI4(2)                         <---------RAP2.6(2) <------MYB46(1)        <---------ANAC58 --------->ALFIN1--------->At5g28300       <---------At4g35610 <---------AtMYB61     <-----------GT1     <---------DEAR3(1) ---------->DOF2<---------TOE2(3)       <---------TOE2(3)   tcatattttagcgtttttcttttatcggtggcgcgatttactcggtaaaagaagagctactacggttttagcggctaaaaatgttgagattggtggttcc  10881300                     <------NtERF2                    ------>NtERF2 --------->TOE2(3)                                      <----------DOF2                    <---------RAP2.6(3)                                               --------->ANAC58                   --------->ANAC46                                                   --------->ANAC58          ----------->HVH21    <---------CCA1(2)                                      --------->ANAC46 ----->MYC3        --------->RAP2.6(2)                                              <---------ALFIN1 ------MYC3        --------->ATERF1(2)                                            <---------ALFIN1 ------>ANAC46     --------->DEAR3(1)       --------->AHL20(2)               --------->ANAC46 -----ALFIN1       <---------ATERF1(2)      <---------AHL20(2)             <---------ANAC58      <--- --ARR14(2)       <---------RAP2.6(2)   --------->AHL20(2)      <---------ATHB12----------->RAV1(1) ->ARR14(2)   <----------DOF2  ------>ZmHOX2a(1)       <-----------RAV1(2) <---------ANAC58    <-----   acgttgttctctctgactttgccgccaagtttcctatctcaactaattaaaaatgggccaggcccaatcgctcttctacgtgccacacacgctttgactt  10881400                                                                               <---------ANAC58                               ----------->GT1                           <---------DAG2                       --------->ICU4                           <---------AHL20(2)                   <------ZmHOX2a(1)                 ---------->DOF2     <----------DOF2     <---------TOE2(3) <---------ATHB51     --------->MYB52(1)  --------->AHL20(2) --------RAV1(1) <---------TOE2(3)  --------->AHL20(2)      --------->ICU4     <---------ANAC58    -- -----DOF2       <---------TOE1(3)  <---------AHL20(2) ----------->GT1  <----------DOF2         -----   tgttgccaaggtttttcttaaggaaataatgggtcgaaataaatgctaacaggcctaaagtaacaattaatgggcctttttgcttcgaagcccatttatc  10881500                                                  <-------TEIL                                                 --------->CCA1(2)                 --------->ARR14(3)             <---------ARR14(2)                 --------->ARR11(3)             --------->ARR14(2)                 --------->GLK1(2)           --------->ANAC58                 --------->ARR14(2)          <---------ANAC55(2)                                <----                 <---------ARR11(3)          --------->ANAC58       --------->ARR14(2)    <---------MYB55(2)                 <-----------ARR10          <---------LBD16         <---------ARR14(2)   -------->P -------->DOF2   <---------ARR14(3)     --------->ANAC46     ---------->DOF2   *TSS   <---------At4g35610 ---->TOE2(3)--------->YAB1       ------>ZmHOX2a(1)     <------ZmHOX2a(1)  ---------->DOF2--------->MYB46(3)   tcaaagagagcgaaatcaaaatcttccttcgtcttcctccataagacacggatacagaggagggaaagaagaacccctaaaacccttgagcaaccactat  10881600                                                          <---------ANAC46               <---------ANAC58                   <----------DOF2      <---------HSFB2a(2)                       --------->ARR14(2)         --------->At4g35610            --------->HSFB2a(2)  --------->WRKY12     <---------ARR14(2) ----------->GT1<---------ARR11(3) --------->HSFC1(2)  <---------ANAC58       <---------LBD16 -----YAB1      --------->ARR11(3) <---------HSFC1(2)  <---------ANAC58 <-------TEIL     <---------ANAC58   gaatggataatagctgaagagcttttactcaaatcgatacttcgagatgcgatttttgcttcgtttaccacaaattcattttcggaaactctcgtgctcg  10881700                               <------------------------ANAC81                            --------->LBD16                                                       ---                            <---------HSFB2a(2)                                                   <--                            --------->HSFB2a(2)                                                   ---                            ------>ZmHOX2a(1)                                                     <--                        --------->ARR14(2)                                                        <--                        <---------ARR14(2)                                                     <-----                   --------->ANAC46                                             <---------YAB1 ------   --------->ZAT14 --------->ANAC58               <----------DOF2            <---------YAB1    ------   <---------ZAT14 --------->ANAC58   ---------->ID1                      ------>ZmHOX2a(1)    ------   atgtctgtactcatgggttcgaagcaattcctcgaattttgtcttcttccttcttttgcctcatacccttcttctccttcttattcttcaagtagacaag  10881800          <---------HSFC1(1)          --------->HSFB2a(2)          <---------HSFB2a(2)          --------->HSFC1(1)      <---------MYB52(1)    --------------->AGL15    <---------ANAC58    <---------ANAC58    <---------------AGL15 ------>ARR11(3)                                                          >>>>>>>>>>>>>>>>>LFY -------ARR11(3)                                                          <<<<<<<<<<<<<<<<<LFY ------>ARR14(2)                                                         <------ZmHOX2a(1) -------ARR14(2)                                                     ---------->DOF2 ---------ARR10                                                  <-----------GT1 ----ANAC55(2)                                                <---------ICU4                <-------- --->ANAC58            <-----------------AGL1                <---------YAB1              --------->At4g35610 --->ANAC55(2)  --------->ARR11(3)   --------->HSFB2a(2)     ------>ZmHOX2a(1)         --------->YAB1 --->ANAC58     <---------ARR11(3) <------NtERF2             --------->ICU4    <---------ATHB12   tatcttccgtttctagaagatttcgaccagttttggcctcgagacctgtgtccaaaaacagtccttattaccaaaggaccaatggtttatcatcttacaa  10881900                                                                    --------->ATHB51                                                                    -------->ATHB1                                                                    --------->ATHB12                     --------->LBD16                               <---------ATHB51                   ----------->RAV1(2) <---------MYB52(1)          <---------AHL20(2)               <---------ALFIN1        ------>ZmHOX2a(1)           <---------YAB1     <---------LBD16 ------>ZmHOX2a(1)--------->TOE2(3)            --------->ICU4 <-------GAMYB ---GT1--------->LBD16            <---------GLK1(1) --------------->AGL15        ----------->GT1   ttcaatccccagagtcccaactcctggtatgtgttgaattccttagttcgatttctatatatgtttgaaattattgacatttggggttatattttagtca  10882000      <---------ARR14(2)                                                               <---------ANAC58      --------->GLK1(2)                                                                <---------ANAC46     <---------ARR14(2)                                                    ----------->GT1     <-----     <---------GLK1(2)        ------>ZmHOX2a(1)                        ------->TEIL<---------At4g35610     --------->ARR14(2) <-----------GT1                        <-------MYC3<------MYB83<---------ANAC58  <------ZmHOX2a(1) <---------YAB1             --------->YAB1  ------->MYC3<------MYB46(1)    -------   tttaggagattctggttctgttcttattactcctcttcttgttatttagtcatattgtgtttccatgtgtatgcatttggtttatagctgcttgcaatta  10882100  Previous    Next  AGI:  At1g30680.1    Description:  toprim domain-containing protein. similar to toprim domain-containing protein [Arabidopsis thaliana] (TAIR:AT1G30660.1); similar to predicted protein [Physcomitrella patens subsp. patens] (GB:EDQ62370.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO42595.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:BAD46002.1); contains InterPro domain Toprim subdomain; (InterPro:IPR006154); contains InterPro domain DNA helicase, DnaB-like, C-terminal; (InterPro:IPR007694) Range:  from: 10881579    to: 10886407    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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