Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                    ----------->GT1                                                                           <---------------AGL15                                                   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                  ------>ZmHOX2a(1)             xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                 --------->TOE2(3)            xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)               <---------YAB1           xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)     <---------YAB1<xxxxx            ------>ZmHOX2a(1)         <-----------GT1        --------->TOE2(3)   <---------TOE2(3)  <           --------->TOE2(3)        xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)   --------------->AGL15  ---      <----------DOF2           --------->TOE2(3)<-----------RAV1(1)      <-----------------AGL1 <--- ->ZAT6  ---------->ID1       <---------AHL20(2)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)     -----------   aaaattgtcttttccttatccttacatgctattttcttaatttctatacatatggtgctatattcttaatttgtttatcaaatatggttattcagttaaa  10624600                                                                                                  <--                                                                                                  <--                  <---------AHL20(2)        --------->ANAC58                                     <---                 <---------AHL20(2)         --------->ANAC58                                     ----                 --------->AHL20(2)   --------->AHL20(2)                                        -----          <---------AHL20(2)          <---------AHL20(2)                                    <--------   ------>ZmHOX2a(1)              --------->AHL20(2)                                        ---------  --------->TOE2(3)          --------->AHL20(2)                       <------ZmHOX2a(2)  <---------AHL20(2) xxxxxxxxxxxxxxxxxxsmallRNA(i2)   --------->AHL20(1)          --------->AHL20(2)        --------->AHL20(2) ---------YAB1  <---------AHL20(2)<---------AHL20(2)         --------->YAB1       --------->ARR11(3) ------>YAB1 <---------AHL20(1)  <---------AHL20(2)         --------->AHL20(2)    <---------ARR11(3) ------ATHB12--------->AHL20(1)  --------->AHL20(2)       --------->YAB1          --------->GLK1(2) >GT1     --------->AHL20(2) <---------AHL20(2)     <-----------GT1  --------->AGP1     --------->YAB1   tcatccttatatttatatattaattttgtatttaaaaaaattaaaaacgaaattttactaaaataaaaatagatccaactccaaaatctattatataatt  10624700                                                              ----------->GT1                                                            <---------WOX13(1)                                                          --------->ATHB51                   <---------ANAC55(2)                    --------->ATHB12                   --------->ANAC58                       <---------ICU4              --------->bZIP60(1)                        <---------YAB1              --------->TGA2(1)                          --------->ICU4       <---------AHL20(2)                              ==============================================       --------->AHL20(2)       --------->ARR11(3)     <---------------AGL15  <---------AHL20(2)    --------->AHL20(2)             --------------->AGL15 -------AHL20(2)   --------->ANAC55(2)                 --------->YAB1 -------YAB1  <---------bZIP60(1)                     <---------YAB1 ------AHL20(2)    --------->ANAC58                <---------AHL20(2)         --------->ATHB12 ----->AHL20(2)   <---------LBD16                  --------->AHL20(1)         --------->ATHB51     -- ---->YAB1    <---------GLK1(1) <---------ARR11(3) <---------AHL20(1)         <---------ICU4    ----- -AHL20(2)  --------->YAB1   --------->YAB1   --------->AHL20(2)             <---------YAB1    <----- >AHL20(2) <---------YAB1<---------AHL20(2)   <---------AHL20(2)      --------->ARR11(3)     --------   ttaattcatttttatgatatcacggattaaataagaacttacaaaaattttaatatatcataattggtaaaacatctacataattgcgaaactatttata  10624800                                                                                 --------->YAB1                                                                                 <--------ATHB1                                                                                 -------->HAHB4                                                                                 --------->ATHB51                    --------->AHL20(2)                                           <---------ICU4                  <---------------AGL15                                          <--------HAHB4                  --------------->AGL15                                         --------->ICU4                 ----------------->AGL3                                         --------->AHL20(2)     <---------ARR11(3)       --------->ZAT6                                    <---------ATHB51     --------->ARR11(3)  --------->YAB1                   --------->ANAC58      <---------YAB1 =================================MADS_MADS               --------->ANAC58    --------->YAB1 ------->YAB1    ----------------->AGL2                   --------->ANAC46   <---------YAB1 ---->YAB1       <-----------------AGL3                --------->At1g77200  --------->AHL20(2) ----YAB1        --------->TOE2(3)    ----------->GT1  --------->DEAR3(1)   <---------AHL20(2) ->YAB1        <---------ARR11(3) <---------MYB46(3)  --------->DEAR3(2)   --------->YAB1   atcaagagaacttacaatttcttaaaatagtaacagtagttcgtaaaaaaaaaaacaccgacgcaattgcgaaactattttaataattaagagttttttt  10624900                  --------->AHL20(2)                  <---------AHL20(1)                  <---------AHL20(2)                                    --------->AHL20(2)               <---------ICU4                                         --------->YAB1               --------->ATHB51                                    --------->AHL20(2)               <--------HAHB4     --------->AtLEC2                 --------->YAB1              --------->ICU4      --------->ANAC58              --------->YAB1                    ---            --------->TOE2(3)     --------->ANAC58           --------->TOE2(3)      <----------DOF2     --------->YAB1<---------AHL20(2)  --------->ICU4<-----------GT1--------->AHL20(2)    <----------DOF2   ttttttctcataatccataattaatttcataaactcatgcaaaaatgagataatatcacatttcattaataaaaataaaaacacttctttctctttgctc  10625000                                                                                                   --                                                                                                  ---                                                                                                  <--                                                                                                 <---                                                                                                 <---                                                                                                 ----                                                                                                 <---                                                                                                 ----                            <---------ALFIN1                                                     ----                      --------->ANAC58                                                          <----               --------->WOX13(1)                                                            ========             ------------>CBF                                                             ===========     <----------ID1   --------->ANAC58                 --------->WOX13(1)   <---------CCA1(2)------>ZmHOX2a(1)   ---------->DOF2--------->YAB1                   --------->WOX13(1)--------->At4g35610  ------>ZmHOX2a(1) ------>ZAT6 *TSS<---------ATHB12                <---------ATHB12    <---------At4g35610  ===========   tcactaaaagacaaaaacaatcacgagccaacacctcttcatcttctccaaatcaatccatcaatggagtcttctcccatctctctctcttcctcctcag  10625100                                                               <---------ARR14(2)   <---------ALFIN1                                            <-----------ARR10 ---->ZmHOX2a(2)                                               ------->TEIL ------>GLK1(1)                                                --------->ARR14(2) ----ZmHOX2a(2)                                             --------->ANAC58 ------ARR14(2)                                             --------->ANAC46 ------ARR11(3)                                             --------->ANAC58--------->TOE1(3) ----->ARR11(3)                <---------ANAC58           <-----------GT1   --------->TOE2(3) ------AGP1                    <---------ANAC58        --------->ARR14(2)<---------GLK1(2) ----->AGP1            --------->ANAC58              --------->LBD16     --------->ARR14(2) ----->ARR14(2)        --------->ANAC58            ------>ZmHOX2a(2)     <---------ARR14(2) -----CCA1(2) --------->ARR14(2) <-----------GT1  <------ZmHOX2a(2)   --------->ANAC46             -- =====HOX2a_HOX2a    ---------->DOF2             --------->ARR14(2)   --------->HSFB2a(2)          <- =====HOX2a_HOX2a   <---------ALFIN1             <---------ARR14(2)   <---------HSFB2a(2)      <----- ====HOX2a_HOX2a   --------->LBD16             ----------->ARR10    --------->ANAC46        <--------   atctcacactctgaaaaatcccccaaagccatgtcttaccttcttcgctccgatccggtttcacgaatccacccagaacctcaatctctaacctctttcg  10625200                                                                 ------>ZmHOX2a(2)                                                                <---------GLK1(1)                                                               --------->ARR11(3)                                                               <---------ARR11(3)                                                               --------->ARR14(2)                                                               <---------AGP1                                                               <---------ARR14(3)                                                               <---------ARR14(2)                                                               <-----------ARR10                                                               --------->ARR14(3)                                                        <-----------HVH21                                                       --------->bZIP60(2)                                                       --------->TGA1a                                                       <---------O2                                                       <---------TGA1a                                                       =========================MYC_MYB                                                       <---------bZIP60(1)                                                       --------->bZIP60(1)                                                       --------->O2                                                       ===============bZIP_DOF                                                      <------NtERF2                                                     <---------DDF1                                                     <---------ATERF1(1)                                                     ------>NtERF2                                                    --------->DEAR3(1)                      <--------                                                    ----------->HVH21                <---------ARR14(2)              ----------->RAV1(2)                  --------->RAP2.3(1)               <---------ARR11(1)        =============================HOX2a_HOX2a   --------->DEAR3(2)                --------->ARR14(2)        ==========================HOX2a_HOX2a      --------->ATERF1(1)  <-------GAMYB------->TEIL        ------>ZmHOX2a(2)                          <------NtERF2<------ZmHOX2a(2)   <---------CCA1(2) ------->AtMYB61                                  <---------ATERF1(1)  <---------MYB46(3)<---------ANAC46 --------ALFIN1 ----------->HVH21           ---------->DOF2---------->DOF2 --------->At4g35610 ----ETT(2) ------>ZmHOX2a(1) ------>ZmHOX2a(1)  <---------DEAR3(1)  ------>NtERF2  <---------ARR14(1) --DOF2<---------GLK1(1)   ------>ZmHOX2a(1)=====================bZIP_DOF<---------MYB52(1) <--------   accacttcgatctcctccctgactctctcctcctcttaatcttcgacaaagtcgccgacgtcaaagatctcggccgttgctgcatcgtatctcgtagatt  10625300                                       <---------YAB1                                     --------->REM1(2)                         --------->KAN4(2)                        --------->HSFB2a(1)                        --------->HSFC1(2)                        <---------HSFC1(2)                        <---------HSFB2a(1)  <---------ZAT6        ------>ZmHOX2a(1)                        --------->KAN4(1)<---------ANAC58    --------->HSFC1(2)      --------->YAB1                        <---------KAN4(1)<---------ANAC58    --------->HSFB2a(1)   --------->GLK1(2)                <-------GAMYB     <---------ANAC58     ------>NtERF2        ------>NtERF2        ---------->ID1 <---------KAN4(2)--------->ATHB12    <---------YAB1 ----------->HVH21 -TOE1(2)      <---------ANAC46   <---------ANAC46    ----------->HVH21    --------->DEAR3(1)   <---- -TOE2(2)   <----------DOF2       <---------ANAC58    --------->DEAR3(1) ------>ZmHOX2a(1)<---------GLK1(2)   ccactctctcgtccctttcgttgagaacgttctcgtccgtgttgattgtgttatctccgacgatgattcctcttcctccgacgagaatcatcgattctct  10625400                                <---------AtMYB61                               <---------ANAC58                              <---------ZAT2                              --------->ABI4(2)                             --------->ALFIN1                            <------NtERF2                           <---------ORA47(2)                           <---------DEAR4(2)                           <---------DEAR3(2)                           <---------MYB46(3)                          --------->ALFIN1                          <---------DEAR3(1)                         <------NtERF2                         <---------ABI4(1)                         --------->ATERF1(1)                        ------>NtERF2                        <---------ATERF1(1)                        <---------ERF1                        <---------DEAR4(2)                        --------->LBD16                        <---------RAP2.3(1)                       <---------RAP2.3(2)                       <---------ATERF1(2)                       --------->ATERF1(2)                       <---------DEAR3(1)                        <---------ARR14(2)                       --------->DEAR3(1)                <---------ANAC58                      --------->RAP2.3(1)                --------->ANAC55(2)                      <------NtERF2  --------->ATERF1(1) <---------ANAC55(1)                      --------->ATERF1(1)       ------>NtERF2 <---------ANAC55(2)                      <---------LBD16<------NtERF2       <---------ANAC58                     <---------RAP2.3(1)      <---------LBD16 <---------ANAC46                     <---------ATERF1(1)  ------>ZmHOX2a(1)<---------MYB52(1)                     ------>NtERF2  <---------ATERF1(1)  <---------ANAC55(2)              ------>ZmHOX2a(2)<---------ANAC58--------->ANAC46  --------->ARR14(2)    --------->ANAC46--------->ANAC46<---------MYB46(3)   <---------ANAC46 ------DOF2   ===================================HOX2a_HOX2a  --------->ANAC55(2)   ttaaacactgcatcgatctcagacgccggcggtgctggtggctccttctccgccttgttccgtctcgtattcgctccaattttcaaaccgtttcaaatgt  10625500  Previous    Next  AGI:  At1g30200.1    Description:  F-box family protein. Identical to F-box protein At1g30200 [Arabidopsis Thaliana] (GB:Q9C534); similar to F-box family protein [Arabidopsis thaliana] (TAIR:AT5G46170.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO40342.1); contains InterPro domain Cyclin-like F-box (InterPro:IPR001810) Range:  from: 10625013    to: 10627083    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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