Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100           <---------ZAT14         --------->ZAT14    <---------At4g35610 <---------At5g28300      --------->AHL20(1) -----------GT1           --------->AHL20(2)                                                   <----- ------ICU4 --------->ANAC46                                                                   ------ -----AHL20(2)            <---------AHL20(1)                                           <----------DOF2 ---->AHL20(2)            <---------ARR11(3)                                       --------->ZAT14 ---->AHL20(1)        <---------YAB1             <---------CCA1(2)                 <---------ZAT14<-- --->AHL20(2)    <---------ICU4    --------->At4g35610                             <---------ZAT18<--   aattacagctcttcactaaacattacgatatattagaagctacacaattccaaatctctaactgaaatattgttttttcatttagtatactttgaatttt  9657000                                                  --------->ICU4                                              <-------TEIL                                         <---------TOE2(3)            --------->AHL20(2)          ---------->DOF2 ----AHL20(2)                          <---------AHL20(2) --->AHL20(2)                          --------->AHL20(2)                                         --- -------AHL20(2)                   <---------AHL20(2) <-------TEIL                                <-- -------YAB1<---------AHL20(2)     --------->AHL20(2)--------->CCA1(2)             <---------AHL20(2)   tttattagttgtttttaattagatgctatatgtttttttaattaaagatgcaaagattcaaattccatgattttgaaaaactcatttttttttttttttt  9657100                                                                                     ------>MYB83----                                                                                     ------>MYB46(1)                                     <---------AHL20(2)                         <-----------GT1  <---                      --------->YAB1--------->AHL20(2)                      --------->AHL20(2)   <--- ------>AHL20(2)     <---------YAB1 --------->YAB1                      <-----------GT1          ---- -------AHL20(2)--------->YAB1     <---------YAB1                    <---------ICU4--------->AtMYB61   ttaaataccaaaactcaaaaattatcaaaatacaactattatatgttgacaaaaaaacaatttatccaaaatttttacttaaataccatcccttgaacac  9657200                                                                       <---------ANAC58                                                                       ----------->GT1                                                                       <---------ANAC58                                                                       <---------ANAC46                                                                     <---------ARR14(2)                      <----------DOF2                                --------->ARR14(2)                     <---------ANAC46                                <---------ARR11(1)          <---              <------MYB46(1)                  <----------DOF2      <---------CCA1(2)     <---------MYB52(1)   <---------TOE1(2) <---------ANAC58    --------->ARR14(2)    ------>MYB46(1)           <----------DOF2  ------>ZmHOX2a(1)  <---------ANAC58    <---------ARR14(2)    --------->MYB52(1)       <---------DAG2 --->MYC3     <------MYB83         --------->DAG2              ------>MYB83          ------>ZmHOX2a(2) ----MYC3    <---------AtMYB61    ---------->DOF2            <---------MYB59   <---------ANAC58 ----- ----MYC2    --------->MYB59   <---------HSFB2a(2)           --------->AtMYB61 <---------ANAC58------ --->MYC2  <---------MYB52(1)  --------->HSFB2a(2)         >>>>>>>>>>MYB80  <---------ARR14(2)-------   gttcctagtttcggtttggtttggcttgatgttctaaaaagcgattcggctttattagtcaaaccaaaccgtatcgtgaattcgtgatcgcctttagcca  9657300                                                   ----------->HVH21                                                 --------->At4g35610                                                 <---------At4g35610                                                <---------ARR14(2)                <---------STY1(2)            --------->ANAC58                --------->STY1(2)            --------->ANAC58                <---------ZAT2               --------->ANAC46            ------>NtERF2                    <---------ANAC55(2)    <---------HSFC1(2)                       --------->ANAC55(1)    --------->HSFC1(2)  <---------ARR11(3)   --------->ANAC55(2)        *TSS ---NtERF2 --------->ANAC46                 <---------LBD16        ------->GAMYB ->NtERF2 <---------LBD16                 --------->ARR14(2)     -------->P --->DEAR3(1)   --------->ZAT2            <---------ARR14(2)   --------->MYB46(3)                  <- -->MYB46(3)--------->LBD16     --------->ZAT6  --------->ARR14(2)--------->MYB46(3)              ---   ccgtgaagcttctccgcgagctagagggtcttaaacactaacaaaatacggaactgacaaacacagcaaccgagactctctcttctctctctctcgctct  9657400                                                                                     --------->LBD16                                                                                    --------->ANAC46                                                                                    --------->ANAC58                                                                                    --------->ANAC58                                                                                 --------->DEAR3(1)                                                                                 <---------ALFIN1                                                                                --------->MYB46(3)                                                                               ------>NtERF2                                                                               <---------ATERF1(1)                                                                              <---------ALFIN1                      <---------ZAT2                                          --------->DEAR3(1)                    ------>NtERF2                                           --------->LBD16                  <------NtERF2                                             ------>NtERF2                  --------->ATERF1(1)                                      --------->ANAC58                 ------>NtERF2                                             --------->DEAR3(1)                 <---------RAP2.3(1)                                       --------->ANAC46            <---------ANAC58                                            --------->ANAC46            <---------ANAC58                                           --------->MYB46(3)            <---------ANAC46   --------->YAB1                       <-----------GT1 --------->DEAR3(1)     ------>NtERF2<----------CDC5                               ------->TEIL<---------ATERF1(1)  <---------ATERF1(1) --------->ZAT2                            <-----------ARR10--------->AtMYB61  --------->At4g35610 --------->At4g35610                      <---------CCA1(2)<---------MYB55(2)  <---------At4g35610 <---------At4g35610<---------ANAC46      <---------GLK1(2)<---------ABI4(2) <---------DEAR3(1)--------->DEAR3(1)  <-----------HVH21    --------->LBD16--------->ANAC58         < ----------HVH21<---------ANAC46   --------->DAG2          <---------LBD16--------->SPL7            - ------>ANAC46<---------ATERF1(1) ---------->DOF2      --------->WOX13(1)<---------ATERF1(1) <-------   ccgtcgctgccatggcttgcgccgagcagcctatcaaaaagcgtcgtctgtatgagtcaatccctgaatctcaccctccgccaccaccgcaactagaatc  9657500                                      ----------->HVH21                                     <-----------HVH21                                    <---------At4g35610                                    --------->LBD16                                    --------->At4g35610                                  <-----------RAV1(2)                                  <---------LBD16                                <---------ARR14(2)        <---------LBD16                                --------->ARR14(2)        <-----------RAV1(2)                               --------->ZAT2        <---------ALFIN1                               <---------ZAT2    <------NtERF2                              --------->LBD16   <---------ATERF1(1)                              <---------ATERF1(1)--------->ATERF1(1)                             --------->ANAC46   ------>NtERF2<------ZmHOX2a(1)                 <--------P  --------->LBD16    <---------RAP2.3(1)                ----------------------->TaNAC69(2) ------>NtERF2                                   <-               <---------MYB46(3)------>NtERF2 <---------DEAR3(1)                                 ---              --------->ALFIN1------>NtERF2  <---------ATERF1(1)                                  --- ---------ARR14(2)  <---------ZAT2<------NtERF2--------->DEAR3(1)                                ---- -------->ARR14(2)  <---------At4g35610      <-----------HVH21                                 ------ --GLK1(2)<---------LBD16   <---------LBD16 --------->DEAR3(1)  <------ZmHOX2a(1)   <------ZmHOX2a(1)   ccaatccccttctacggtggtaagctcgttcccggctccggtgacaccgtcgcctccatctcaggaggaaattcaaacgagaagtaggaacagagaagag  9657600                                                                         <---------ARR14(2)                                                                         <---------ARR11(1)                                                                 --------->ARR14(2)                                                                 <---------ARR14(2)                                                                <---------At4g35610                                                                --------->At4g35610                                                                <---------RAP2.6(3)                                                                <------NtERF2                                                               --------->RAP2.6(2)                                                              <---------DEAR3(1)                                                              --------->ATERF1(1)                                                              --------->SPL7                                                             --------->ATERF1(1)                                                             <---------ATERF1(1)                                                             <------NtERF2                                                             ------>NtERF2                                                             --------->DREB2C(1)                                                             <---------DREB2C(1)                                                            <---------SPL7                                                            ------>NtERF2--------->ARR14(2)                                                            <---------ERF1                                                            <---------RAP2.3(1)                                                            <---------ATERF1(1)                                                           <---------ANAC46                                                           <---------ANAC58                                                           <---------RRTF1(2)                                                           --------->ATERF1(1)                                                           <---------RAP2.3(3)                                                           <---------DREB2C(2)                                                           <---------RAP2.3(2)                                                           <---------RAP2.6(2)                                                           --------->ATERF1(2)                                                           <---------ATERF1(2)                                                           <---------DEAR3(1)                                                          <------NtERF2  --------->GLK1(2)                                                          --------->ATERF1(1)             --------->RAP2.6(3)                          --------->RAP2.6(3)           <---------ARR14(2)         <---------AtLEC2                                <---------ATERF1(1)            --------->ARR14(2)        --------->ZAT18                                 --------->ALFIN1 <-----------ARR10 ------TEIL----------->HVH21                            <---------DEAR3(1)             <---------CCA1(2) ------>CCA1(2)                            <---------ANAC46<---------ANAC58          <---------ANAC58 ------>GLK1(2)                       <-----------RAV1(1)<---------ERF1  ------->TEIL<---------ANAC58 ----->ARR11(1)                 --------->ARR11(3)   --------->ALFIN1   <---------CCA1(2)           - ----->ARR10<---------WRKY18(1)<---------CCA1(2)     <---------AtMYB61  <---------ARR14(1)          <   attcgaagagtgcatgactgctataagcgtcttaaatcttgtgttgctcagagagatggtggcggccgctctgcgaatcttgagcaagcgtatcgctccc  9657700                                                                                    --------->LBD16                                                                       --------->At4g35610           --------->LBD16                                            --------->ARR14(2)        <----          <---------HSFB2a(2)                                         --------->GLK1(2)         -----          --------->HSFB2a(2)                                         <---------ARR14(2)    <--------     --------->At4g35610                                             <---------GLK1(2)    --------->ATHB12     <---------At4g35610                                        <---------WOX13(1) <---------HSFB2a(2) -------->At4g35610                                           --------->ATHB12     --------->HSFB2a(2) ---------At4g35610             --------->TOE2(3)            <---------YAB1       <---------LBD16   tcatctccgcttccagaggtttattttctctcattcttagctcgatttagttctatcaattggatgattgagaatctgccattttccggagttgattgag  9657800                                                                                              <------                                                                                             <-------   <---------AHL20(2)             <---------TOE2(3)                                          <------- -----At4g35610    --------->LBD16---------->ID1                                       --------->ICU4 ---->At4g35610    ------>ZmHOX2a(1)                      ---------->DOF2         ----------->GT1 -WOX13(1)       <---------LBD16<---------ANAC46<----------DOF2                   <---------ANAC55(2)   ctcattttttttttttttttcctgaaattgagttttgtggttttagataactttgtatgagaaagaatacttcttaactgaattaagtgaatattagggt  9657900  Previous    Next  AGI:  At1g27750.1    Description:  nucleic acid binding. similar to FPA [Arabidopsis thaliana] (TAIR:AT2G43410.3); similar to FPA [Arabidopsis thaliana] (TAIR:AT2G43410.4); similar to FPA [Arabidopsis thaliana] (TAIR:AT2G43410.2); similar to unnamed protein product [Vitis vinifera] (GB:CAO61466.1); contains InterPro domain RNA recognition motif, RNP-1; (InterPro:IPR000504); contains InterPro domain Spen paralogue and orthologue C-terminal (InterPro:IPR012921) Range:  from: 9657372    to: 9661945    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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