Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                       ---------->DOF2                              ------->GAMYB                              --------->ANAC46 -------YAB1                 <------------AtMYB77 -----ICU4                   --------->MYB46(3) ---->YAB1                  -------->P --->ICU4                   <---------At5g28300               <---------YAB1 ----ATHB12                --------->MYB52(1)          --------->MYB52(1) ----ATHB51  --------->AHL20(1)<-----------TGA1      <---------MYB52(2) --------->WOX13(1)       ---- ->WOX13(1)  <---------AHL20(1)<-----------HVH21   <---------ARR11(3)  --------->MYB46(3)        <---   atgagtatgctctaatatttttctatgactaaccgtcactaaagcatcatcaagaactaacaatctaattgcatccatcaacattcaacagttaacatca  9647000                        --------->TOE2(3)                     --------->ANAC58              --------->ANAC55(2)              <---------ANAC55(2)             <-------TEIL           <---------ARR14(2)           --------->ARR14(2)                 <---------MYB59            --------->GLK1(1)           <---------ARR11(3)                 --------->TOE2(3)   ---------->DOF2       <-------TEIL ------->GT1--------->CCA1(2)     --------->ANAC46           --------->GLK1(1)      <---------YAB1 -- ------ANAC55(2)     --------->ANAC58       ------->TEIL---------->DOF2  <---------GLK1(1)         <-   agtgaaacatgaagatacatgacaaaccacaaaaatacgactcgtgaacctaaatcactaaagaaatctaaaggcatttccctgttttgatacattccac  9647100                                       <---------ARR11(3)                                           -                                       --------->ARR11(3)                                          <-                                --------->TOE1(3)                                                  <-                                --------->TOE2(3)                           <---------At4g35610    <-                               --------->HSFC1(2)                      --------->ANAC58            <-           ------->TEIL        <---------HSFB2a(1)                     --------->ANAC46            --  <---------ANAC46             <---------HSFC1(2)                      --------->ANAC58        <----- ------->ARR14(2)             ------->TEIL--------->HSFB2a(2)        <---------AtLEC2       <-------- --------ARR14(2)          <---------MYB52(2)             ------>ZmHOX2a(1) --------->At4g35610<-----   agtttcgcatatgaattttagggtccaaaacgaaccttcaatatctcgaatcagagagtcctgaaacatttgcaagtcatcttccgaatgcttagagtca  9647200                                                                 <---------GLK1(1)                                                                <---------ARR14(2)   --------->ANAC46                                             --------->ARR14(2)   --------->ANAC58                                         <-------PIF5   --------->ANAC58                                         ------->MYC2 ------>MYB46(1)                                            <-------MYC2 ------>MYB83                               --------->ANAC46<-------MYC3 --------->MYB52(1)                       ----------->RAV1(1) ----------->ARR10 -------->MYB55(1)                       --------->ETT(2)   ------->MYC3 --------MYB52(2)                    <-------TEIL           ------->PIF5               --------->YAB1 --------MYB46(2)                 <---------HSFB2a(1)      <---------ANAC58     <---------ANAC55(2) --------MYB111(1)                --------->HSFB2a(1)      <---------ANAC46     --------->ANAC58 --------MYB59                    --------->At4g35610      <---------ANAC58     --------->ANAC58 ------->AtMYB61--------->LBD16   --------->ZAT2         <---------ANAC58      --------->SPL1(2) ----WRKY38(1) <---------LBD16    <---------HSFC1(2)     <---------ANAC58      --------->SPL7 -ZAT6         <---------ANAC46   --------->HSFC1(2)     <---------ANAC46    <---------SPL7        -- ----WRKY12   <---------LBD16   <------ZmHOX2a(1)    ---------->DOF2       <---------------AtSPL3 ---   acctaacgacacgattagcgggaatcgacatttaggagcttcgtccacagaacaagatagcgcgtggattttcgcagacagtacggaaatgaaaatgaga  9647300                                                                                ------>MYB83                                                                                --------->MYB52(1)                                                                                ------>MYB46(1)                                                                  --------->GLK1(2)                                                                 <---------ARR14(2) ------------>CBF                                                                 <---------GLK1(2)--------->ANAC46                                                                 --------->ARR14(2)--------->TOE2(3)                                                                <------ZmHOX2a(1) --------->ANAC58                                                        <-------TEIL           --------->MYB55(1)               --------->MYB52(1)                     --------->AGP1          <---------MYB111(1)             <---------MYB59                          <---------ARR11(3)      <---------MYB59             --------->AtMYB61         <---------ANAC58================HOX2a_HOX2a--------->ANAC58   --------->GLK1(1)                ==========================HOX2a_HOX2a     <---------MYB46(2)   <---------GLK1(1)                <------ZmHOX2a(1) --------->ARR11(3)      --------->MYB46(3)   <---------HSFB2a(1)   ---------->ID1<---------ANAC58<------ZmHOX2a(2)  --------->At5g28300 --------->GT1 ------>MYB46(1)   --------->HSFB2a(2) --------->GLK1(1)    <---------SPL7 ------>ALFIN1 ------>MYB83      <---------HSFB2a(2) <---------GLK1(1) <---------LBD16    --------->At4g35610   gtgggaaattcgaaacctaacctcttcgtcttcttcgaggagcttgacaatggagagatccatggaggaatctcgcggtaccaaacgtcaatagctcaaa  9647400                                                                               --------->TOE1(2)                                                                             <---------ARR14(2)                                                                             --------->GLK1(2)                                                                             --------->ARR14(2)                                                                            <---------GLK1(2)                                                                            --------->ARR14(2)                                                                 ----------->TBP                                                               --------->AHL20(2)                 <--                                                      --------->LBD16      --------->HSFB2a(1)  <----                                                     <---------ANAC55(2)   <---------HSFB2a(1)  <----                                             <-----------------AGL1       ----------->ARR10     <----               --------->ANAC58            --------->GLK1(2) <-----------TBP<---------ARR14(2) ------               --------->ANAC58        --------->YAB1--------->ANAC46--------->DAG2--------->HSFB2a(2)        <---------KAN4(2)         ------------>CBF  <---------LBD16<---------AHL20(2)  <---------ZAT14   <---------------------WRI1  <---------CCA1(2)  --------->ARR14(2)---------->DOF2<---------HSFB2a(2)   acgaagagggaattttcaaggaaacgatttgttgtatccaataagattccaaattccgcaagtttttatataaagggagattctgcgagaacaccgtgtc  9647500                                 <-------GAMYB                                <-----------RAV1(1)                             --------->ARR14(2)                                     <---------MYB52(1)                             <---------MYB52(1)     <-------GAMYB                   --------->ARR14(2)                             <---------ARR14(2)    --------->MYB55(2)               <---------ARR14(2)                            <---------SPL7         --------->MYB111(2)             <---------SPL7                           --------->DEAR3(1)      --------->MYB111(1)            --------->DEAR3(1)     <----------DOF2      <------NtERF2            <---------MYB46(3)            <------NtERF2   ---------->ID1        ------>NtERF2             --------->MYB52(2)           ------>NtERF2  <-----------GT1       --------->ANAC46          <---------MYB55(1)           <---------DEAR3(1) -------MYB52(1)      <---------ANAC58           <---------MYB52(1)            --------->ANAC46 -----ANAC46          <---------ANAC58 ------>ZmHOX2a(2)                     <---------ANAC58 -----ANAC58         <---------ZAT18 --------->ARR11(3)                      <---------ANAC58 -----ANAC58         --------->ZAT14 <---------ARR11(3)                     <---------ZAT18 ---->ID1<---------YAB1 <---------DEAR3(1) <----------DOF2  <----------DOF2 --------->ZAT14    <-----   gttttttctttttgataaaacactgcgcgccgttctgttgatcttcttttcggtagttgtttcttttggataaaacactgcgcgccgttctgttcttctt  9647600                                               <---------AHL20(2)                                              <---------AHL20(1)                                              --------->AHL20(1)                                    <<<<<<<<<<GT-3b                                --------->AHL20(2)                                <---------AHL20(2)        <---------ARR11(3)                               <---------AHL20(2)         --------->ARR11(3)                               --------->AHL20(1)        <---------GLK1(1)          <---------ANAC58     <---------AHL20(1) <-----------RAV1(1)     --------->YAB1 --------->At5g28300     --------->YAB1       --------->AHL20(2)     <---------MYB52(1)   <----------DOF2 -----DOF2<---------ANAC58     --------->AHL20(2)<---------TOE2(3) ----------->GT1  --------->At4g35610   ttcggtaactgggcttgttcttgtatatcaaaatttatttttcttgaatataatgttggagttcttaaacagttattcatattagcatcagacttttgca  9647700              <----------DOF2           <-----------GT1          --------->AHL20(2)      --------->AHL20(2)      <---------AHL20(2)                                                             <---------TOE2(3)      --------->AHL20(1)                                                            ---------->DOF2     --------->AHL20(2)                                                         ------>MYB46(1)  <---------AHL20(2)                ------->MYC3                           <-----------GT1  --------->AHL20(2)           --------->CCA1(2)                 --------->LBD16------>MYB83  --------->AHL20(1)        <---------YAB1  <---------YAB1     --------->HSFB2a(2) --------->AHL20(2) --------->AHL20(2)     ------->TEIL<-------MYC3               <---------HSFB2a(2) <---------AHL20(2)   aaaaaaaattaattaacttttagatgaattttgatacacgtttatgaccattgagttttggacttcccgtagataattcaccaaattaaagaagggatta  9647800                                              ---------->DOF2                                            --------->ANAC58                                            --------->ANAC58                                        <-----------HVH21                                       --------->ANAC58                --------->ANAC55(2)        <---------AHL20(2)             --------->ANAC58                <---------ANAC55(2)        --------->AHL20(2)        --------->MYB46(3)                  <---------At5g28300   <---------MYB52(1)           --------->MYB52(1)                   <-----------GT1   --------->DOF5.7(2)         --------->TOE1(2)                ---------->DOF2<----------DOF2  --------->TOE1(3)           <---------MYB52(2)    <----------DOF2  --------->MYB52(1)---------->DOF2  --------->TOE2(3)   ---------->DOF2  --------->ANAC46 <-----------GT1<---------TOE2(3)          ---   tctacgttaattaaacagtgctactaaagaaaacaaacgacccgtcaagaaaggcttttttcaattgaaagttacggtattcttttggtaaaagaaaaat  9647900  Previous    Next  AGI:  At1g27720.1    Description:  TAF4b (TBP-ASSOCIATED FACTOR 4b); transcription initiation factor. similar to TAF4 (TBP-ASSOCIATED FACTOR 4), transcription initiation factor [Arabidopsis thaliana] (TAIR:AT5G43130.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO61456.1); contains InterPro domain Transcription initiation factor TFIID component TAF4; (InterPro:IPR007900) Range:  from: 9643338    to: 9647363    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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