Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                    <--                                                                                              -------                                                                                              <------                                                                                          <---------AHL20(2)                          --------->ATHB12                                               --------->ARR11(3)                         <---------AHL20(2)                                              --------->AHL20(1)                         --------->AHL20(1)                                              <---------ARR11(3)                         --------->AHL20(2)                --------->YAB1                <---------AHL20(1)              <-----------GT1        <---------ANAC58      --------->ATHB12              --------->AHL20(2) ---------ALFIN1         <---------AHL20(1)       ---------->DOF2   <---------TOE2(3)   --------->AHL20(2) ----->ANAC46<-----------GT1         <---------ANAC58     <---------YAB1<---------GLK1(1)<---------AHL20(2)   ctccacttcttgatttttccttcccattttattggtttagcgtaatgtatacaaaagtttatgattagttatggatttcggtttagataaatatatttaa  9181800    --------->CCA1(2)                                                                       <-------GAMYB   <---------ARR11(3)                                                                      --------->MYB52(2)   --------->ARR11(3)                                                           <---------ICU4   --------->ARR14(2)               --------->ANAC58                 --------->At4g35610------------>MYB.PH3(2)   <---------ARR14(2)               --------->ANAC58                ------->GAMYB <---------YAB1 -------ATHB12                      <---------ANAC55(2)           ---------->DOF2--------->TOE2(3) -->AHL20(2)                  --------->AHL20(2)                 --------->MYB52(1)  ---------->DOF2 ---AHL20(2)             ----------->GT1                      --------->YAB1   <---------YAB1   <----   atcaagatatgttgatatactattagacggttttaaatacgcatattgcatattgttgacaaaaacataacagcacaaaacatcattaaaagttagttgt  9181900                                           --------->ANAC58         --------->ANAC46                  --------->ANAC58        ------>MYB83                   <---------YAB1     <---------YAB1        ------>MYB46(1)              --------->YAB1 <---------YAB1       <---------ALFIN1              --------->AHL20(2)<---------YAB1      --------->MYB46(3)         <---------YAB1     --------->ICU4                              <----    --------->PCF2    <---------At4g35610---------->DOF2--------->YAB1                         ------ -----YAB1 --------->ZAT14  <---------ZAT6 --------->ANAC46               --------->ICU4      -------   cattgagacccactgaaccagtttagcttagtgttacaattataaaagcaagagattattatgagataaacaagtgattcttaagtcttaatcccaaaaa  9182000                                                      <---------HSFB2a(2)                                                      <---------YAB1                                                      <---------TOE2(3)                                                   <---------YAB1                                                 --------->YAB1   -------->HAHB4                                                 -------->HAHB4   <--------ATHB1                   <-                      <----------DOF2            <---------ICU4   --------->ATHB51        <---------ANAC46                     <---------ICU4             <---------ATHB12  --------->ATHB12        <---------ANAC58      <---------AHL20(2)                        --------->ICU4    <---------ICU4          <---------ANAC58      --------->AHL20(2)                   --------->ANAC58      <---------ATHB51      --------->DAG2     --------->AHL20(2)         <---------AHL20(2) --------->ICU4<---------YAB1       ---------->DOF2 -----------AtSPL8 <---------ARR11(3)      --------->ANAC58      --------->ICU4<----------ID1      <- --->DAG2          --------->GLK1(2)     <-----------GT1    --------->YAB1     ----------->GT1------- --->DOF2      --------->YAB1----------->GT1    <---------YAB1 --------->YAB1---------->DOF2---------   ggtccaaattaatctcttcataatctttagctagtaaattttgtaacgaaatgattatggaagcataataattgaaccaaaaagaaaaaaaagcgtgtgg  9182100                                                 <---------ANAC58                                                 <---------ANAC58                                                 <---------ANAC46                                               --------->ALFIN1                                              <---------PCF2                                             <------MYB83                                             <------MYB46(1)                                             <---------ANAC58             <---------ATHB12                <---------ANAC58             --------->ICU4                 <---------MYB46(3)                <---------ARR11(3)  <------------CBF   --------->DAG2        --------->ALFIN1             <---------At4g35610 --------->ATHB12   ===============================bZIP_DOF           --------->HSFB2a(2) <---------AHL20(2) ---------->DOF2      --------->O2                 <---------HSFB2a(2) ----------TBP   --------->AHL20(2)      --------->TGA1a           <----------DOF2 ---------DOF2--------->AHL20(2)         <---------TGA1a   --------->YAB1     --------->ARR11(3) -->ALFIN1   --------->AHL20(2)          =====================================bZIP_DOF >ALFIN1 ------------>CBF                <---------O2    <-----------TBP--------->At4g35610*TSS   ---   gatttattgggagcaataaataaaaagttgaaatgtgtaagtcaagtgggtgcgagtgtatttataaaactttcagaagacatcttctctgcaaattcca  9182200                --------->ARR11(3)                <---------ARR11(3)          ----------->RAV1(1)        ------>NtERF2        <------NtERF2        --------->LBD16       --------->ANAC46       --------->RRTF1(2)       --------->RAP2.6(2)       --------->RAP2.3(2)       --------->DEAR3(1)      <---------LBD16      <------NtERF2      --------->RAP2.3(1)     <---------RAP2.3(1)                                                            ----------->GT1     ------>NtERF2                                                                  <------MYB46(1)     <---------ATERF1(1) <----------DOF2                                            <------MYB83    --------->DEAR3(1)  <---------ANAC58                  <---------CCA1(2)    --------->ANAC58    <---------DEAR3(1)  <---------ANAC58            --------->ANAC58           --------->ANAC58------  <-----------HVH21<----------DOF2                  --------->ANAC58  --------->ZAT14          <----- ------>YAB1    <---------AHL20(1)           --------->ANAC46    <---------GLK1(2) --------->MYB59 <-   tcatcgtcgccgcaacaatatcttttgctttctctctcattcttcaccagtaacaagcccatctctcgattcttcactctcaaggaaggtaaatttccta  9182300                                                                                           ----------                                                                                           <---------                                                                                          <----------                                                                                          <----------                                                                                          <----------                                                                                          -----------                                                                             <------ZmHOX2a(2)                                                   ==================================================   <-----------GT1                       --------->ATHB12                   --------->ARR11(3) >ZmHOX2a(1)               ------->TEIL  <---------ICU4        <----------DOF2      <---------MYB52(1) ----CCA1(2)------>ZmHOX2a(1)  <---------MYB52(1)  --------------->AGL15    <---------ARR11(3) ---------DOF2 ------>ZmHOX2a(1)        <---------YAB1   <---------------AtSPL8--------->KAN4(2)  ---   tcttttttctattcctccttcgtaaaatgtatcgtttttttgatcattgtgttcttgttgtggtactttgaattgtgagatcattcgttatttctcaaac  9182400                                           <---------bZIP60(1)                                           --------->bZIP60(1)                                     <-                                        ----------->HVH21                                          --                                      <---------ANAC58                                             <-                                      --------->O2                                               <---                                      <---------TGA1a                                           -----                                      <---------O2                                             ------                                      ==============================bZIP_DOF                   <-----    --------->TOE2(2)                 ==============================bZIP_DOF                   ------ ----->AGL15                          <---------ANAC58                                     >>>>>>>ZML2 ------AGL15                          --------->bZIP60(1)        ---------->DOF2           --------->HSFC1(1) -------AGL1                   <---------ANAC58          <----------DOF2                   <---------HSFC1(1) -------AGL3                   <---------ANAC46     <-----------GT1                        --------->HSFB2a(2) -------AGL2      <---------MYB52(1)  <---------ANAC46--------->ANAC58                <---------MYB46(3) ------>AGL2     <-------GAMYB <---------ANAC58   <-----------HVH21              <---------AtMYB61 -- ======MADS_MADS ===============================MYC_MYB  <---------DAG2     --------->MYB52(2)<------ -------->GT1   --------->MYB52(2)    --------->TGA1a --------->ANAC58     <-------TEIL    <---------HSFB2a(2)   tggaaacatgggttttgttcgttattgtcagtttcgtctgtcgtgacatcgttgtcacgctttatatcaaagatgggttcgttttggtttgttctagatc  9182500         <---------GLK1(2)     ---------->DOF2  --------->ANAC58  --------->ANAC46  --------->ANAC58 --------ZAT14 ------->ZAT14 --------ZAT18                                                                <---------TOE2(3)   --- ------SPL7     <---------ANAC58                               <---------ANAC46                  <--- ->ZmHOX2a(2)   <---------ANAC58                               <---------AtLEC2                  ---- --------->AtSPL3                                              <---------ANAC58                 ----- ----------AtSPL8   <-----------GT1                ------>ZmHOX2a(2)      <-------GAMYB         ----- --------->AtSPL8<----------DOF2              <---------WOX13(1)       --------->At4g35610      <---- ------->SPL7   <---------ANAC46       <---------ARR14(2)      <---------ANAC58                 <---- ---ARR11(3) <---------RAP2.6(2)   --------->At4g35610   <-------TEIL  <---------At4g35610   <-------   gtacactcaaagattgtggcttttacattttgtgatcagaagaaccagattgatcgaagtacattgcatgttctgctgttaacattttgaaattgataga  9182600  <---------At4g35610           <----------DOF2  --------->At4g35610        <---------ALFIN1                                                   <---- <---------TOE1(3)          <---------ZAT18                                                     <---- --->ZmHOX2a(2)             ------>NtERF2                                                 <---------- ---ZmHOX2a(2)             --------->RAP2.6(2)                                            ----------- ----->CCA1(2)             --------->RAP2.3(2)                                           <----------- ---->ARR11(3)             --------->DEAR3(1)                                            ------------ ---->AGP1                --------->RAP2.3(1)                                            ============ -----ARR11(3)          --------->ANAC46         --------->YAB1<---------MYB46(3)        <----------- -----AGP1            <-----------GT1           <---------ATHB12               <----------DOF2------- --WOX13(1) --------->ALFIN1<------NtERF2     --------->WOX13(1)  ----------->GT1  ---------->ID1   tctaagcttacaaggtgtttgatttaacgccgcactttcttatatagccaatcatcgacttgtagttgttgtaaattgtcactttgttgtttctattaaa  9182700  Previous    Next  AGI:  At1g26560.1    Description:  glycosyl hydrolase family 1 protein. similar to glycosyl hydrolase family 1 protein [Arabidopsis thaliana] (TAIR:AT5G54570.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO41891.1); similar to hypothetical protein OsI_010256 [Oryza sativa (indica cultivar-group)] (GB:EAY89023.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO41892.1); contains InterPro domain Glycoside hydrolase, catalytic core; (InterPro:IPR013781); contains InterPro domain Glycoside hydrolase, family 1; (InterPro:IPR001360) Range:  from: 9178365    to: 9181822    Orientation: Forward Links:  TAIR  MIPS    AGI:  At1g26570.1    Description:  ATUGD1/UGD1 (UDP-glucose dehydrogenase 1); UDP-glucose 6-dehydrogenase. similar to UDP-glucose 6-dehydrogenase, putative [Arabidopsis thaliana] (TAIR:AT3G29360.1); similar to UDP-glucose 6-dehydrogenase, putative [Arabidopsis thaliana] (TAIR:AT5G15490.1); similar to UDP-glucose 6-dehydrogenase, putative [Arabidopsis thaliana] (TAIR:AT3G29360.2); similar to unnamed protein product [Vitis vinifera] (GB:CAO41885.1); similar to UDP-glucose 6-dehydrogenase (UDP-Glc dehydrogenase) (UDP-GlcDH) (UDPGDH) (GB:Q96558); similar to hypothetical protein [Vitis vinifera] (GB:CAN62897.1); contains InterPro domain NAD(P)-binding; (InterPro:IPR016040); contain Range:  from: 9182191    to: 9184380    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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