Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                      <---------YAB1                                                <-------GAMYB                                               <---------MYB46(3)                                               <------MYB83                                -------->P     --------->MYB52(2)                   --------->WOX13(1)                            ------->TEIL       <------MYB46(1)        <---------ARR14(2)            -       ----------->HVH21 <---------YAB1       <---------AtMYB61       --------->ARR14(2)      ------- ----------DOF2    --------->DAG2            <--------P              <---------CCA1(2)      --------- ->HSFB2a(1)      ---------->DOF2           <-------GAMYB      <---------ETT(2)   <---------YAB1 <---   ctctttgttctgacacttggtaaagttatgaatctaccagtgctagggttggttacgatttgctctcgaccatatccaacgcttatcaatccatttacat  9162500                          --------->ALFIN1                    <---------bZIP60(2)           --------->ANAC58                    ==================================================bZIP_DOF                    --------->O2                  --------->ANAC58                    <---------ANAC46        <-----------HVH21            <---------YAB1      --------->YAB1<---------O2  <---------DEAR3(1)                     --------->ICU4    <---------YAB1 -------->YAB1      <---------TGA1a   ----------->HVH21                --------->YAB1    --------->YAB1 -->ANAC55(2)    ----------->HVH21----------->HVH21                   --------->ICU4    --------->ICU4 >AHL20(2)       ----------->TGA1--------->ATERF1(1)       ---------->DOF2      <------ZmHOX2a(1) ------ICU4    --------->O2      --------->SPL7   --------->ANAC46    <---------YAB1   <-------------   aatgacaatagtactccatgtgacgagggtatggggacgacggacatgtcaaacgcgatagaaaagacgttgatgatgatgaggaagacgatgatgagaa  9162600                                                                                            ---------                                                                                          --------->ETT(2)                                                                                          -----------                                                                                         <------NtERF2                                                                                         ------>NtERF2                                                                                         --------->ATERF1(1)                                                                                         --------->ORA47(2)                                                                                         --------->RAP2.3(1)                                                                                        ------>NtERF2                                                                                        --------->LBD16                                                                                        <---------ATERF1(1)                                                                                        <---------RAP2.3(1)                                                                                       <---------ANAC46                                                                                       <---------DEAR3(1)                                                                                      --------->At4g35610                                                                                      <---------At4g35610                                                                                      <---------LBD16                                                                                      <------NtERF2                                                                                      <---------ABI4(1)                                                                                      --------->ATERF1(1)                                                                                     <---------RAP2.3(1)                                                                                     --------->ALFIN1                                                                                     <---------ATERF1(1)                                        --------->ALFIN1                            <---------DEAR3(1)          <---------AtMYB61<---------TOE1(2)                                  <-------TEIL--------->DEAR3(1)      <---------ANAC58     <---------TOE2(2)                              <---------TOE1(3)------>NtERF2      <---------ANAC58    --------->STY1(1)     <-------GAMYB--------->At4g35610    <---------RAP2.3(3) --------->YAB1       <---------ZAT18 ----------->GT1      <------ZmHOX2a(1) --------->CCA1(2) ------ <------ZmHOX2a(1)--------->ZAT6 ---------->DOF2<---------At4g35610       <---------TOE2(3)<---------SPL7 --------WRI1   -------->P<---------STY1(1)     --------->At4g35610       <---------------AtSPL8 ----   gaaggataacttgtggtctaccagtaccctaggtttaaaggggtgaagacagttgaatataggagcggaagcgattaaggtacaaggctgcggcgaccgg  9162700                                         <---------bZIP60(2)                                         <---------ANAC46                                  <---------ALFIN1                                 <---------ZAT18                              --------->At4g35610                                            --------                          <---------MYB46(3)                                                 <-------                          --------->MYB52(2)                                            =============                        --------->ARR14(2)                                          ------->GAMYB                        <---------ARR14(2)                                         --------->MYB46(3)                     <---------ANAC46    <---------ANAC58                     --------->ANAC58 >MYB52(1)          <---------At4g35610  <---------ANAC58      --------->STY1(2)  -------->P--------- >HVH21             <---------LBD16   ----------->HVH21       ------>MYB46(1) --------->ANAC58 --->LBD16------->TEIL--------->LBD16------->MYC3             ------>MYB83 ---------->DOF2  --------- ------>DOF2      <---------DEAR3(1) <-------MYC3 <---------ZAT6       --------->GLK1(1)------>ZmHOX2a(1)   aaagatgtgatgaaacttggactgcggatagttgctgcacatgacttggatagtgtgagaaacctagctacagatttcaaaggcaacctcctaaatatct  9162800                                                                                             <-------                  --------->At4g35610                     --------->KAN4(2)           <---------ARR14(2)          --------->HSFB2a(2)                         --------->ATHB12             <---------ANAC58          <---------HSFB2a(2)                        <---------YAB1                <---------ANAC58 ------>ZmHOX2a(2)<---------At4g35610          <----------DOF2                     <---------ANAC46 ->ARR11(3)       <-------GAMYB             <-----------GT1                    <---------At4g35610 --ARR11(3)      <---------MYB46(3) ---------->ID1 <---------ANAC58            --------->At4g35610 =======HOX2a_HOX2a                <-----------GT1 <---------ANAC58           <-----------RAV1(1) --- >RVE1(1) <-----------RAV1(2)  <------------------------ANAC81       <---------AtMYB61--------->ARR14(2) >CCA1(1)<-------TEIL>>>>>>>>>>WRKY26   <----------DOF2 <---------WOX13(1)<----------DOF2    --------   cgatctctaggtccagaggcagttgatcaaacttgtttttctcttttgacttttcttgattgttctcggttttggtctttttgctgcgtgtcttcatgat  9162900                                                                                                 ----                                                                                                 ----                                                                                          <---------AHL20(2)                                                                                          <----------                                                        <----------DOF2                   --------->AHL20(2)                                                       <---------ANAC58                 <-----------TBP                              <---------GLK1(1)    <----------DOF2  <---------HSFB2a(2) --------->AHL20(2) --YAB1                 ---------->DOF2     <------NtERF2           --------->HSFB2a(2) <---------AHL20(2) ------>WOX13(1)  --------->TOE1(3)       <---------ANAC46     <----------DOF2        <-----------TBP ->ICU4           --------->TOE2(3)  --------->REM1(2) <---------ANAC58     ----------->GT1    <-----   caatcgctcttgtttcgaaaccctaaaaaaggctctccgtctaggcgtctactctttgctttgctcttttctagcaactagtaaaactatatatatataa  9163000                                                                                              <------                                                                                              -------                                                                                       --------->TOE2(3)                                                                                 --------->HSFB2a(2)       <---------MYB46(3)                                                        <---------HSFB2a(2)     <---------ANAC58     --------->ANAC58                                      <---------ANAC46<---- ----->MYB46(3)           --------->ANAC58      --------->At4g35610     --------->GLK1(2)    -------- -------->CBF             --------->ANAC46   --------->At4g35610       <---------GLK1(2)------------>CBF -TBP<---------ANAC58 <-----------GT1--------->DAG2  <---------ZAT18   --------->ARR11(3)    <------- ------GT1        <---------GLK1(2) ---------->DOF2  --------->ZAT18   <---------ARR11(3)    <-------   ccaatgggcttgttgagtcagattttacaagcccaagataaagtctcatcagaagcccacttaagtaagtagagattttgtgtcgagaacatcaatatat  9163100      <---------AHL20(2)              <---------GLK1(2)                                  --------->YAB1 -----TBP                        ------------>AtMYB77<-----------GT1                   ------>MYB83 -->AHL20(2)                    ----------->HVH21 <----------DOF2                      ------>MYB46(1) -----AHL20(2)           --------->ARR11(3)     ------>ZmHOX2a(1)                ----------->HVH21 ->AHL20(1)              <---------ARR11(3)  ---------->ID1           ---------->DOF2<---------MYB59 --ARR11(3)         --------->At4g35610   <----------DOF2  <----------DOF2     <---------At4g35610  < --AHL20(1)         <---------At4g35610  <------------------------ANAC81    <-------TEIL --------->TOE2(3)   atatgaaattaatccacaaatcagctaaatcttggtgacagtttcttttcctcttttacatcttttgttcaacaaagcttcatatgacctatcttatttc  9163200                                                                 --------->HSFB2a(2)                                                   <----------DOF2                            <------                                                  <---------ANAC58                   ---------->DOF2                --------->YAB1                    <---------ANAC58     --------->AHL20(2)   <--------                --------->TOE2(3)     <---------YAB1         <---------ANAC58     ----------->GT1          --------->ARR11(3)       <------ZmHOX2a(2)     <---------GLK1(1)        <---------ZAT6          <---------ARR11(3)      --------->ARR11(3)    <---------ARR14(2)  <-----------RAV1(2)------         <---------CCA1(2)        <---------ARR11(3)    --------->ARR14(2)  <---------LBD16 --------- ---------At4g35610    <---------TOE2(3)--------->WOX13(1)   <---------ANAC58  <------ZmHOX2a(1)   ttagcttatatatatctatcttattaagttattcaagatcatcaatcttcttgctttggatttgcttacagaattaaaccaggagtgtaaagacgttaac  9163300                                                                              <---------ANAC46                                                                            --------->ALFIN1                                                                    --------->At5g28300                                                                   ----------->GT1 ---DOF5.7(2)                 <---------AHL20(1)                 --------->RAP2.6(3)               -- -MYB52(1)    --------->TOE2(3)                                 --------->MYB52(1)         ---------- --->At4g35610--------->TOE1(3)           --------->DAG2       ----------->TGA1<---------ANAC46    -- >DOF5.7(2)<-----------GT1    --------->AHL20(1)               ----------->HVH21 ----------->GT1  ---   tgaaacacctatataaccttacacacttgttatatattatacaaaaattgatcagagtattgttcatgacggtaaaacttggggggaaaaaaaaaaagac  9163400  Previous    Next  AGI:  At1g26510.1    Description:  F-box family protein. similar to F-box family protein [Arabidopsis thaliana] (TAIR:AT5G15660.1); similar to S2-locus F-box [Malus x domestica] (GB:ABD85473.1); contains InterPro domain F-box associated type 3 (InterPro:IPR013187); contains InterPro domain Cyclin-like F-box (InterPro:IPR001810); contains InterPro domain F-box associated type 1 (InterPro:IPR006527) Range:  from: 9159893    to: 9162897    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At1g26520.1    Description:  similar to PRLI-interacting factor L, putative [Arabidopsis thaliana] (TAIR:AT1G15730.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO41893.1); contains InterPro domain Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminal (InterPro:IPR011629); contains InterPro domain Cobalamin (vitamin B12) biosynthesis CobW-like (InterPro:IPR003495) Range:  from: 9163233    to: 9165887    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version