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Chromosome 1
Chromosome 2
Chromosome 3
Chromosome 4
Chromosome 5
Position
Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
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1 10 20 30 40 50 60 70 80 90 100
--------->
LBD16
--------->
HSFB2a(2)
<---------
At4g35610
<---------
HSFB2a(2)
--------->
At4g35610
--------->
At4g35610
--------->
MYB59
<---------
ARR11(3)
<---------------
AtSPL8
--------->
ZAT14
<------
ZmHOX2a(1)
--------->
ARR11(3)
<---------------
AtSPL3
<---------
ZAT14
============================
HOX2a_HOX2a
--------->
LBD16
<-----------
RAV1(2)
------
GT1
<---------
TOE2(3)
------>
ZmHOX2a(2)
<---------
LBD16
<-----------
HVH21
ctgtatactatcgaattaaggacgac
cttgtaaactttgatctgtatttaagagcttcccggagataaaacaagtacggacacaagagtcaggtccaaac
8902800
<---------
ALFIN1
--------->
GLK1(1)
--------->
ARR14(2)
<-------
TEIL
<-----------
ARR10
--------->
ZAT2
--------->
GLK1(2)
--------->
At4g35610
<---------
ARR14(2)
<---------
At4g35610
------->
TEIL
<---------
At4g35610
--
--------->
MYB52(1)
--------->
WOX13(1)
<---------
ZAT2
--------->
AHL20(2)
----------->
HVH21
--------->
REM1(1)
<---------
ZAT2
--------->
TOE2(3)
----------->
TGA1
------>
ZmHOX2a(1)
<---------
GLK1(2)
<---------
LBD16
<---
tcaggctcttctacagacctgacgaatctccactctcctacatcgctaatatcaatccctaaattctccagcag
ctgcatttactcggaaacattaattc
8902900
---------
------>
ZmHOX2a(1)
--------->
AtMYB61
--------->
ALFIN1
------->
GAMYB
--------->
GLK1(2)
-------->
P
--------->
YAB1
--------->
HSFB2a(2)
------->
TEIL
<---------
ARR14(2)
<------
ZmHOX2a(1)
--------->
MYB52(1)
<-------
TEIL
--------->
MYB46(3)
------->
LBD16
--------->
DAG2
<-----------
GT1
--------->
ARR14(2)
<-----------
GT1
------
LBD16
---------->
DOF2
--------->
AHL20(2)
<---------
ARR14(2)
<---------
ATHB12
gcggaaacaatgagaaaaagaggacagtgctaaactcataaattac
cagaatcagtgtggattcgaagtcgaaattcatcaaatcaacctcctccgagca
8903000
<---------
ALFIN1
----------->
HVH21
<---------
MYB59
--------->
WRKY12
------>
ZmHOX2a(2)
--------->
SPL7
<-----------
RAV1(1)
<------
ZmHOX2a(2)
------->
TEIL
<---------
ARR14(2)
--------->
LBD16
---------->
DOF2
--------->
LBD16
----------->
GT1
<---------
HSFB2a(2)
<---------
LBD16
--------->
LBD16
--------->
At4g35610
--------->
GLK1(1)
<---------
ARR14(2)
--------->
HSFB2a(2)
<--------
P
<---------
GLK1(1)
---
>
LBD16
--------->
ARR14(2)
<---------
HSFB2a(2)
--------->
At5g28300
<----------
ID1
tgagtcaagtatagaaatactaaatccggacctcactccgtcttccagagcctgtaaatctgttgacggtaagtcccagagatcggaatcgacaaaggaa
8903100
<---------
At4g35610
<------
NtERF2
<---------
ZAT2
<---------
ATERF1(1)
<---------
DEAR3(1)
--------->
ATERF1(2)
<---------
ATERF1(2)
--------->
DEAR3(1)
<<<<<<<<<
CBP60g
--------->
ANAC58
<---------
At4g35610
<---------
ANAC58
<--
--------->
At4g35610
<---------
ANAC58
<----
--------->
REM1(1)
------>
NtERF2
--------->
HSFB2a(2)
--------->
ANAC58
<-------
TEIL
<---------
RAP2.3(1)
--------->
ANAC58
---------->
DOF2
-----
--------->
At4g35610
<---------
LBD16
<---------
HSFB2a(2)
<---------
YAB1
<-----
<---------
At4g35610
--------->
ATERF1(1)
<------
ZmHOX2a(1)
<---------
YAB1
------
------>
YAB1
<<<<<<<<<
SARD1
<-----------
GT1
--------->
GLK1(1)
<---------
ZAT18
--------->
ANAC58
<-
tcgtaagcttcatctccaaatttcgccggctgtttttgcttctcgagtaggaactcaacgtcgtctctagggctcttgatgatcaaagcaagtttcagat
8903200
--------->
ARR14(2)
<---------
ARR14(2)
<---------
GLK1(1)
------>
MYB46(1)
<---------
GLK1(2)
--------------
--------->
ARR14(2)
--------------
--------->
At4g35610
--------->
ANAC58
<---------
At4g35610
--------->
ANAC58
--------->
ARR14(2)
--------->
ARR14(2)
<---------
ARR14(2)
--------->
TGA1a
<---------
ARR14(2)
---------
GT1
--------->
GLK1(1)
--------->
PCF5
-----
GLK1(1)
--------->
YAB1
--------->
At4g35610
------>
NtERF2
---->
GLK1(1)
--------->
ARR14(2)
*
TSS
<---------
ZAT18
-------
----
GLK1(2)
<---------
ARR14(2)
--------->
ZAT2
<---------
ANAC58
--------->
At4g35610
--->
ARR14(2)
--------->
GLK1(2)
--------->
At4g35610
<---------
ANAC58
<---------
At4g35610
<-
----------------
AGL1
<---------
TGA1a
--------->
DEAR3(1)
---------->
DOF2
------>
MYB83
ttcccat
ttctgcagaatcggaattcacaagtgtgaagaagctc
gccgatgaaagttttccttgtttttcaaagtttaagcggacccaaaccaaatcggt
8903300
<---------
TOE1(3)
<---------
ARR14(2)
<------
MYB83
<---------
ANAC58
--------->
ARR14(2)
<---------
MYB46(3)
--------->
LBD16
<---------
YAB1
<---------
MYB52(1)
<---------
LBD16
<---------
AHL20(2)
--->
AGL1
<---------
TOE2(3)
------>
ZmHOX2a(2)
--------->
YAB1
--->
AG
<------
MYB46(1)
<------
MYB83
----------------->
AGL1
--------->
DAG2
==
---->
GT1
<---------
SPL7
<------
MYB46(1)
<-----------
GT1
<---------
GLK1(2)
---------->
DOF2
<-
----------
GT1
<---------
ANAC58
--------->
YAB1
<---------
At4g35610
--------->
CCA1(2)
<-----
taaaccgttgggttacggtttagcttggtttgatcgaattataccggattcagtcagattataatttgataatcagatagaggcaaaaagtgttcaactt
8903400
<---------
At4g35610
--------->
TGA2(2)
<-----------
TGA1
--------->
TGA2(1)
--------->
bZIP60(1)
<---------
TGA2(1)
=============================
MYC_MYB
--------->
bZIP60(2)
<---------
ANAC46
<---------
ANAC55(2)
--------->
ANAC55(2)
--------->
ANAC58
<---------
bZIP60(2)
=================================
bZIP_DOF
--------->
ANAC58
>>>>>>>>>>
HY5
<---------
bZIP60(1)
<---------
O2
<---------
TGA1a
<---------
MYB46(3)
--------->
O2
<-------
GAMYB
--------->
TGA1a
================================
MYC_MYB
<-----------
RAV1(1)
----------->
STF1
<---------
ANAC58
<-----------
STF1
<------------
AtMYB77
<XXXXXXXXXXXXXXXXXXXX
MIR863-3P
--------->
At4g35610
<---------
ANAC46
----------->
HVH21
------>
MYB83
--------->
GLK1(2)
<---------
ANAC58
----------->
TGA1
------>
MYB46(1)
--------->
ARR14(2)
<-------
GAMYB
----------->
GT1
<-----------
HVH21
<---------
ARR14(2)
<---------
ANAC58
<-----------
HVH21
--------->
MYB52(1)
================================================
bZIP_DOF
<---------
LBD16
------>
ZmHOX2a(1)
---------
DOF2
<---------
ANAC58
--------->
ALFIN1
--------->
MYB46(3)
<---------
GLK1(2)
<------
ZmHOX2a(2)
-----
DOF2
=======================================
MYC_MYB
*
TSS
<----------
DOF2
--------->
AHL20(2)
tctttcttcttgggttgtgtgttgttgttgttaaatgtgtgacgtcatctcaaacc
aactgtgcttcttcggaatctgtaagaaaaaaaatcgatccttt
8903500
<---------
WRKY38(1)
<---------
WRKY12
--------->
ANAC46
--------->
WRKY18(1)
--------->
ANAC58
<-------
MYC2
<---------
DEAR3(2)
--------->
YAB1
<-------
MYC3
<---------
MYB46(3)
<---------
ATHB12
------->
MYC2
--------->
ETT(1)
--------->
DEAR3(1)
<----------
DOF2
------->
MYC3
--------->
ARR14(2)
--------->
DEAR3(2)
--------->
ANAC58
<---------
ALFIN1
<---------
ARR14(2)
--------->
ATERF1(1)
---------->
DOF2
<---------
REM1(2)
<-----------
HVH21
<---------
ATERF1(1)
--------->
ANAC58
<---------
ETT(2)
--------->
LBD16
<---------
PCF5
--------->
ANAC58
--------->
TOE2(3)
<---------
LBD16
<-------
cgactagggaccgcctaaatcatacgcaaacaaagtctcttcctttacccgtctacacgttcgaattttttctccgggtcgggtcaatgtcaagaacgac
8903600
<------
NtERF2
--------->
LBD16
<---------
LBD16
--------->
ATERF1(1)
----------->
HVH21
--------->
ALFIN1
------->
MYC2
<-------
MYC2
------->
MYC3
<-------
MYC3
------>
ZmHOX2a(2)
<-------
PIF5
<---------
GLK1(1)
<---------
ALFIN1
------->
PIF5
--------->
ARR14(2)
--------->
LBD16
--------->
O2
<---------
ARR11(3)
--------->
ANAC46
<---------
O2
<---------
ARR14(2)
--------->
ANAC46
--------->
TGA1a
--------->
ARR11(3)
<---------
GLK1(1)
<---------
bZIP60(2)
<---------
CCA1(2)
--------->
GLK1(1)
<---------
TGA1a
--------->
At4g35610
<---------
ARR14(2)
--------->
ANAC55(2)
<---------
At4g35610
<---------
GLK1(2)
<---------
DEAR3(2)
<---------
YAB1
<---------
AGP1
--------->
ARR14(2)
----------->
GT1
--------->
ANAC46
<---------
At5g28300
--------->
At4g35610
-------
---
ID1
<---------
AHL20(2)
<---------
ANAC46
<-----------
RAV1(1)
<---------
At4g35610
<-------
gagaattgtatataatcgtcgattcacgtggccgggtttatcatttactgctggatctcgttttcaattttgagtcagattccccccaattgagagattc
8903700
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AGI:
At1g25375.1
Description:
metallo-beta-lactamase family protein. similar to unnamed protein product [Vitis vinifera] (GB:CAO42171.1); contains InterPro domain Beta-lactamase-like; (InterPro:IPR001279)
Range:
from: 8900140
to: 8903244
Orientation: Reverse
Links:
TAIR
MIPS
AGI:
At1g25380.1
Description:
mitochondrial substrate carrier family protein. similar to mitochondrial substrate carrier family protein [Arabidopsis thaliana] (TAIR:AT2G47490.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO42182.1); contains InterPro domain Adenine nucleotide translocator 1; (InterPro:IPR002113); contains InterPro domain Mitochondrial substrate carrier; (InterPro:IPR001993); contains InterPro domain Mitochondrial carrier protein; (InterPro:IPR002067)
Range:
from: 8903457
to: 8905989
Orientation: Forward
Links:
TAIR
MIPS
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publications
when using AthaMap.
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