Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                               <---------At4g35610                             --------->At4g35610                           <---------ANAC58          <---------ANAC58                     <----------DOF2                 <---------ANAC58                        ------>MYB83     ----------->HVH21     <---------ANAC58     --------->YAB1                               ------>MYB46(1) --------->ZAT2   <---------ARR11(3)           <---------ATHB12          <----------DOF2    <-------- <---------ZAT2   --------->ARR11(3)    --------->At4g35610  ------>ZmHOX2a(1)<<<<<<<<<TBF1--------->MYB46(3)   cttagctcggacatgaacaacatcttttggcttctgagtctcatctccattcatggcttcttcctcttccgacctctttcttcttctcttcgacccactc  8881700                                                                                                  ---                                                                                              <------                                  --------->GLK1(1)                                           -------                            --------->TOE1(2)                                                --------                            --------->TOE2(2)      --------->ZAT14                           <-------                           ----------->RAV1(2) --------->YAB1                                <-------           <----------DOF2 <---------ANAC58   <---------At4g35610        <------------MYB.PH3(1)  ---       <-----------GT1     <---------ANAC58   --------->At4g35610      <-----------GT1       --------  <----------DOF2  --------->HSFB2a(2)      --------->REM1(1)       --------->CCA1(2)  --------->ANAC58 -ALFIN1<-----------GT1  <-----------GT1   <-------TEIL            <---------ARR11(3)  --------->ANAC58   tcttctttatttccttttcttctcgtattacctgcgatttctagcttcatcagaacacacataaacatagatataacagtttttcccacaaacaataaaa  8881800          <---------At5g28300  <---------AHL20(2) --------->AHL20(2)                               <---------WOX13(1) ------>YAB1                                    --------->ATHB12 ---AHL20(2)                                   <---------YAB1 -->AHL20(2)        --------->AHL20(1)    --------->ATHB12 ->YAB1  <-----------GT1                  <---------ICU4 --AHL20(1)         <---------AHL20(1)    --------->ATHB51           --------->ATHB12 --AHL20(2)         <---------AHL20(2)    -------->ATHB1           <<<<<<<<<<<<<<<<<LFY ------>AHL20(2)    --------->AHL20(2)   <---------YAB1       ---------->DOF2          ------->TEIL ->AHL20(2)        <---------ATHB12      --------->ICU4     <---------MYB52(2)---------->DOF2      <-   ttataaaattttcaccgtgcaataaatttgggaagaagtgagaattattgtgattggcatcaactaaagctccattggagaaaagcatgaaactggaagg  8881900                                                                          --------->YAB1                                                                         <---------YAB1                                                                        --------->AHL20(2)                                                                       <--------HAHB4                                                                       --------->ATHB51                                                                       <---------ICU4                                                                       --------->YAB1                                                                      <---------YAB1                                                                   <---------YAB1                                                              --------->YAB1                                                              <---------ICU4 ----------->GT1                                                             <------ZmHOX2a(2)    --------->ZAT2                                          <---------ARR11(3)    <---------ZAT2           <---------LBD16                --------->ARR11(3)   --------->GLK1(2) --------->ATHB12<---------TOE2(3)     <------ZmHOX2a(1)<---------YAB1    <------ -------P<--------P --------->AHL20(2)                 ---------->DOF2--------->ICU4          <------   ggtagaagctggtaagtccagatttattagctctggattttggttaatgtgtgcaaagaaaggatcatgaccattattatagttatatggctcaaaccgt  8882000                                 <---------GLK1(1)                                 --------->GLK1(1)                              <---------YAB1   <---------At4g35610                       --------->YAB1        --------->ZAT18                           *TSS----------                   <---------AHL20(2)        <---------ZAT18      <----------DOF2--------->YAB1 ---ANAC58        <---------AHL20(2)  <----------DOF2          <-----------GT1 <-------GAMYB ---ANAC58        --------->AHL20(2)  <---------DAG2     ---------->ID1       ----------->GT1 <------   gccattagagacactacaaattaaatcaaaatatgatttcctttttgtgagctagttttgttttttttctttctctaagacagttataaaacttgcaatt  8882100                                                --------->AHL20(2)                                                <---------AHL20(2)                                               --------->AHL20(2)         <------MYB83                                            --------->AHL20(2)            <------MYB46(1)      <---------WOX13(1)                    --------->ICU4                ----------->GT1     <------------CBF                <---------ANAC58                --------->ATHB12   <---------YAB1                    <---------ANAC46           <---------AHL20(2)            <------ -->CBF    --------->AHL20(2)        <---------ANAC58           --------->AHL20(2)            <------ ------CBF <-----------TBP           ----------->GT1      <---------TOE2(3)   --------->MYB52(2)    <   gagttgtgattgtttatatagatagaaatgtctaagatggggtgaaatatttaataagttaagtttttaaatgatttggttatttgctcatgtattgtgt  8882200                                                                                         --------->PCF2                                                                                         <---------TCP15(1)                                                                                        <---------PCF2                                                                                   <---------ANAC46                                                                               <---------ARR11(3)                                                                               <---------GLK1(2)                                                                          <---------ANAC46                                                                        <---------ZAT14 --------->TCP15(1)                                                                        --------->ZAT14 --------->TCP20                          <-----------HVH21          <------MYB46(1)    <---------ZAT18----------->HVH21                         --------->ALFIN1            <------MYB83     <---------ZAT14  <---------TCP15(2)                       <---------ANAC58          --------->STY1(2)    --------->ZAT14  <---------TCP23 ---ANAC58             <---------ANAC58          <---------STY1(2)<-----------GT1  <-----------RAV1(1) ---ANAC58             <---------ANAC46          <---------ZAT2  <---------YAB1--------->ARR11(3) ----------DOF2 ---------->DOF2   ---------->DOF2--------->ZAT2--------->YAB1----------->ARR10   gacttttggtgagaatgagaaagaagcgtgtgagaccaaagagacactcgtagctaggtttccatttatcactgtgcagtagattttgtgggacccatgt  8882300                        <------NtERF2                      --------->ETT(1)                    <-----------HVH21                                                            ----                 <---------ANAC58                                                              <-----                 <---------ANAC58        <---------------AGL15                                 ------             <---------MYB59             --------------->AGL15                              <--------           <---------ARR11(3)        <---------ARR14(2)                                    --------->YAB1          <---------CCA1(2)          --------->ARR14(2)         ----------------->AGL1    --------->ICU4        --------->CCA1(2)    <----------DOF2   <---------TOE2(3)<------NtERF2           <----------DOF2       --------->ARR11(3)   <---------DAG2<----------DOF2      ------>NtERF2     --------->ARR11(3)   tcaatgttagatatatctaacttgtcgggaccttttgagtatcccttttaatgtaacaagtatggtgccaaattgaaaccgaagaaattgcattaatgat  8882400                                                                                                  <--                                                                                               ------                                                                                             <------NtERF2        <---------ICU4                                                                     --------->ETT(1)        --------->YAB1            --------->MYB52(1)                                       --------->LBD16       <------ZmHOX2a(2) <---------ICU4                                                   <---------ANAC46 -->ZmHOX2a(2)           --------->ATHB51                        --------->TOE2(3)   --------->MYB52(2) ----ARR11(3)            <--------HAHB4                  ------>NtERF2     --------->GLK1(1)--------- --->ARR11(3)            --------->ATHB12            <---------TOE2(1)<---------At4g35610 <---------LBD16 -TOE2(3)               --------->ICU4              --------->SPL7 ---------->DOF2 <---------MYB52(1)   ctacgagcgatcatcacaagttttgcattattaggctatcggacaaaacttaagtacgacgacttaacattaagcggctatctcggctagttgccggaaa  8882500                                            --------->YAB1                                            <---------ICU4                                           --------->ICU4                                           <---------YAB1                                         --------->YAB1                                         <---------ICU4                                        <---------YAB1                                        --------->ICU4  --------->AHL20(2)                                      <---------ICU4   <---------YAB1                                      --------->YAB1 <---------ICU4                                     --------->ICU4  --------->YAB1                                   <---------ICU4   <---------YAB1                                   --------->YAB1 <---------ICU4                                  <---------YAB1  --------->YAB1                                  --------->ICU4 <---------YAB1  xxxxxxxxxxxxxxxx>smallRNA(i)                                --------->YAB1   --------->ICU4 <---------AHL20(2)                                <---------ICU4 <---------ICU4   --------->AHL20(2)                               <---------YAB1  --------->YAB1   <---------AHL20(1) -------ICU4                <---------AHL20(2)--------->ICU4--------->AHL20(2)                   ---- --->GLK1(1)         <----------DOF2 <---------YAB1 --------->ICU4                            ------- >LBD16      ----------->GT1--------->AHL20(2)<---------YAB1<---------AHL20(2)         ----------->GT1   tacttacattgtttttggtaaaacttttgttttattattattattattattattattattatttaaaaaatttggaccatttgtgtttttggtaaaactt  8882600  Previous    Next  AGI:  At1g25330.1    Description:  basic helix-loop-helix (bHLH) family protein. similar to BEE1 (BR ENHANCED EXPRESSION 1), transcription factor [Arabidopsis thaliana] (TAIR:AT1G18400.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO42158.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN76460.1); contains InterPro domain Basic helix-loop-helix dimerisation region bHLH; (InterPro:IPR001092); contains InterPro domain Helix-loop-helix DNA-binding; (InterPro:IPR011598) Range:  from: 8880254    to: 8882087    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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