Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                         <----------DOF2                                                                      ------>ZmHOX2a(2)                                                                    ------->TEIL                                                                    <---------AGP1                        =============================HOX2a_HOX2a    --------->ARR14(2)                 xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)       <---------ANAC58            <------ZmHOX2a(1)                                <---------ANAC58       <----------DOF2      <------ZmHOX2a(1) <------ZmHOX2a(1)                    <---------ANAC46   <----------DOF2 -------->DOF2 <------ZmHOX2a(1)                         <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3) -ANAC58  --------->ALFIN1                         <---------DAG2   <---------ARR11(3)      <-------- -ANAC58<---------TOE1(1)                     <------ZmHOX2a(2)     <---------ARR14(2)    ------>ZmHOX2a(2) -ANAC46<---------TOE2(1)    --------->At4g35610   <----------DOF2  --------->ARR11(3)    xxxxxxxxxxx   gcaaaggaggacgaggaggagaagaaggagaagatgactgtaagttggatcaacttttcaattgcttatggatcttttctgactttctttgatcgttttt  8741500                 --------->GLK1(2)                <---------GLK1(2)             <---------TOE1(3)             <---------TOE2(3)            <-----------GT1            --------->MYB52(1)            <---------DOF5.7(2)                                 <---------TOE2(3)    --------->LBD16                                             <---------TOE1(3)                   <   --------->LBD16    xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)<---------AHL20(2)                 <------MYB83   <---------ANAC46   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)--------->AHL20(2)                 <------MYB46(1) -MYB52(1)--------->DOF5.7(2)                              --------->AHL20(1)                -------- xxxxx>smallRNA(i)  <---------YAB1xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)<---------AtMYB61 <---------AHL20(2)   ttgtcccgagtagttaacgattctggttgaaaacgggaatggagcgaagaacgctgagaaattttttaggttttggtttccatattttagttaatttggt  8741600      <---------STY1(2)                                 ---------->DOF2      --------->STY1(2)                  <---------CCA1(2)   ----------->GT1                       <- <-----------GT1           <----------DOF2         <------ZmHOX2a(1)        <---------AHL20(2)     <- <<<<<<<<MYB98            <---------ANAC58       --------->MYB59     <---------TOE2(3)         <----- ->MYB59                  <---------ANAC58     <---------MYB52(1)   <-----------GT1        <---------MYB59   atgttactagctagtacttgtactcgttgctttctatttgtttatatctgttaggaccaaaagatgtaattaacatttttaattcgatatttgcctaatt  8741700                                 ----------->RAV1(2)                                 --------->At4g35610                            --------->YAB1                         ---------->DOF2                      --------->MYB46(3)                   --------->ZAT18                           --------->ANAC58             <---------ANAC58 <------ZmHOX2a(2)              --------->ANAC58             <---------ANAC46<---------ARR11(3)             ------->GAMYB                         ---            <-----------------------TaNAC69(2)             --------->MYB46(3) --------->ANAC58    --- --------ANAC58    <---------ZAT18             <---------ANAC58               --------->ANAC46   ---- --------ANAC58--------->ALFIN1  <---------At4g35610     --------->YAB1       --------->ANAC58 <----- ----WOX13(1)<---------ANAC58--------->ARR11(3)<---------ANAC58     --------->YAB1    --------->YAB1   gccttgttagtagtatcgtggtggactcaaagatcatctgagcccatgggcttgttcaataacaaccaattcatagtttcacgcccattcaaaacaaaat  8741800             --------->ARR14(2)         <---------LBD16       --------->MYB52(1)       <-----------GT1                                           ----------->RAV1(1)               <- ------>TOE2(2)  --------->LBD16                                <----------ID1           ----------->GT1 ------>TOE1(2)<---------LBD16          ----------->RAV1(1)     --------->ANAC46    <--------P   ---- ----->YAB1----------->HVH21           --------->ANAC46    ---------->DOF2         <---------MYB52(1) ----ARR11(3)<---------ARR14(2)<------------CBF   --------->At4g35610          --------->GLK1(2)-----   catacgacttaaccggacccggttttgtattgaaattgtatacaacataatttgctgaaacaaaagacgacagaaaaacaaaatcggtaagtagtagaaa  8741900                                                                  <---------ICU4                                                                 <---------YAB1                          *TSS                                 <---------ICU4                     --------->HSFB2a(2)                      <---------YAB1                  -------                     <---------HSFB2a(2)                      --------->ICU4               ------>MYB83                XXXXXXXXXXXXXXXXXXXX>MIR859           --------->ANAC46                     ------>MYB46(1)  ---------->DOF2  --------->At4g35610                <---------ALFIN1                   --------->AtMYB61 ---------ID1  <---------ALFIN1                  <---------ICU4--------->YAB1            <---------MYB111(1) ----->DAG2 <---------ZAT18           --------->ARR14(2)  <-----------TGA1              --------->ANAC46 ----->DOF2 --------->ZAT18           <---------ARR14(2) --------->DEAR3(1)     <-----------GT1   aaggaaaagaatagtcccctcttctgcaaaatcaaaaacatatttgcatcatcttcacaccgtcatcatcatcgtcttcaatttacttccaccaaatcaa  8742000                                                             <----------DOF2                                                             <---------DAG2                                                 --------->MYB52(2)                        <----------DOF2          <---------MYB46(3)                                <-             --------->TOE2(3)           <---------YAB1     <---------DAG2            <-----------GT1 -->AHL20(2) --------->TOE1(3)         --------->YAB1  ------>ZmHOX2a(1)      --------->ICU4   <-----   ataatctctcaaaaaccctaatttctctttttcttctctgatcaaaattgttcgttcctctcccttttcatcttatcggaatgcttattttctggtcgcc  8742100                                                                             --------->ANAC58                                                                             --------->ANAC46                                                                           --------->ANAC46                                                                <-------TEIL --------->ANAC58                                                             --------->CCA1(2)                                                 <------ZmHOX2a(1)  <-------TEIL            <--------                                           --------->DAG2   --------->ARR11(3)   --------->DAG2 --------ATHB12     --------->TOE2(3)     --------->DAG2    <---------ARR11(3) ---------->DOF2 -NtERF2          <---------AHL20(2)     ---------->DOF2---------->DOF2 <-------TEIL        ---------   aatcgaagtctaaaccctattttcttaatcttctagggtttcgaaaagggaggagagtgaaagatatacatacatacacacgaaaggggtttaagatgtc  8742200                       ----------->HVH21                     <---------ANAC58                     <---------ANAC55(2)                     <---------ANAC58                <---------------AtSPL3             --------->ALFIN1                                                   <---------ZAT2             <---------ZAT6                                                     --------->ZAT2             ----------->GT1                                                    <---------At4g35610           <---------ANAC58                                                     --------->At4g35610         <---------ZAT14  <---------ANAC46                                 ------>NtERF2            <         --------->ZAT14--------->MYB52(1)          <---------ICU4      --------->At4g35610         -   <---------At4g35610 ----------->TGA1      <---------TOE2(3)          <---------At4g35610  <-------   --------->LBD16   --------->ANAC55(2)     <---------TOE1(3)          <---------ZAT2       --------  --------->ANAC46  <-------TEIL    <---------MYB46(3)                  --------->ZAT2       -------- -ARR11(3) <---------ANAC46        <XXXXXXXXXXXXXXXXXXXXMIR403         ------>MYB83          <------- >ARR11(3) <---------ANAC58    <------ZmHOX2a(1)   --------->ICU4      ------>MYB46(1)    <---------At4g35610   tcttccgctactggagtgtaagtacgtgacggaggagtttgttcgtgaaggtaagaatggcaactatggaaccaagctgcccagctctgtgccgatgctt  8742300                                                                                <-----------RAV1(1)    ------>ZmHOX2a(1)                         <---------DAG2                 <---------ARR14(2) ---------ARR14(2)                         <---------ALFIN1                  --------->ARR14(2) -------->ARR14(2)                      --------->ANAC46                <---------ANAC55(2)         - --HSFB2a(1)                      --------->ANAC46                      <---------ANAC46         ---- ->HSFC1(2)                       --------->ANAC58                   <---------ATHB12          ------ ->HSFB2a(1)                      --------->ANAC58                 --------->WOX13(1)      --------->ARR14(2) --HSFC1(2)--------->ZAT2      <---------REM1(2)        ------>ZmHOX2a(1)   <---------CCA1(2) -------   cgtttcctctacgagctctcttggattttggtatacacacaaacaccaccttctcttcctactactatccaatcacgcgtatatgttgttcgagttcctc  8742400  Previous    Next  AGI:  At1g24706.1    Description:  similar to putative THO complex 2 [Oryza sativa (japonica cultivar-group)] (GB:BAD87730.1); similar to hypothetical protein OsI_004810 [Oryza sativa (indica cultivar-group)] (GB:EAY76963.1); similar to predicted protein [Physcomitrella patens subsp. patens] (GB:EDQ69221.1); contains domain THO2 PROTEIN (PTHR21597) Range:  from: 8741926    to: 8755544    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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