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Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
 
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                                                                                             -------
                               <---------At4g35610                            ------>ZmHOX2a(2)
                          --------->ZAT2                                    <---------AGP1   -------
                          <---------ZAT2  ------->GAMYB                     <---------ARR11(3)
                          <---------At4g35610                     --------->DAG2             -------
          --------->CCA1(2)    --------->At4g35610   <---------ARR14(2)     --------->ARR11(3)
   --------->ANAC46       --------->At4g35610        --------->GLK1(2)      ------->TEIL    <-------
------->GT1              <---------AGP1--------->MYB52(1)        ---------->DOF2   --------->YAB1
 
ggttacaaacaatatacaagtagtagtagagctgagctaagttaacagacatagcgaatcgattttcaaaaagtagatggatctattcatcaaactacgg  8687800
                                                         --------->CCA1(2)                     -----
                                                        <---------ARR14(2)                     <----
-->ANAC58                                               --------->ARR14(2)       <---------MYB52(2)
-->ANAC58            --------->ANAC58            ---------->DOF2               --------->MYB52(1)
-->ANAC46            --------->ANAC58          <---------AHL20(2)     ---------->DOF2 ----------->HVH21
--LBD16    --------->ZAT6                     --------->AHL20(2)    --------->YAB1 --------->MYB52(1)
 
catcaacatagtaaacactatgccaagtaaacaagagcgaaactagaaatttaaaagcagatatgaagaaatcaaaaggaagaaacgaactgatggtgat  8687900
                                                                  <---------LBD16
                                                              --------->ANAC46
                                                           ------>ZmHOX2a(2)
                                                          <------ZmHOX2a(2)
                                                         <---------ARR14(2)
                                                         --------->ARR14(2)
                                                        <------ZmHOX2a(1)
                                                       --------->HSFC1(2)
                                                       --------->HSFB2a(1)
                                                       <---------HSFB2a(1)
           ------>ZmHOX2a(1)                           <---------HSFC1(2)      <---------DEAR3(1)
      <---------At4g35610                             <---------TOE1(2)<---------DAG2
   <---------MYB52(1)                            <---------ARR14(2)--------->ANAC58         <-------
  <-----------HVH21                              --------->ARR14(2)--------->ANAC58        <--------
  <-----------TGA1                              =================HOX2a_HOX2a  <---------At4g35610
 --------->ANAC46                               ==================HOX2a_HOX2a --------->At4g35610
---->bZIP60(1)                   <---------MYB52(1)------>ZmHOX2a(2)   <----------DOF2     <--------
-----bZIP60(1)                  <----------DOF2 <------ZmHOX2a(1)<---------ALFIN1<------NtERF2
 
gtctccgtcaggtccttgaagcatcttatccattcctttgggtccaagagaggatcgaaggatccgagccacggctttaccagcggcgatattggctttc  8688000
                                                                                ------>NtERF2
                                                         ------>NtERF2         --------->DEAR3(1)
                                                        --------->ANAC58      <------NtERF2
                                                        --------->ANAC58      --------->At4g35610
                                                       --------->SPL7         <---------At4g35610
                                                     <---------SPL7          <---------ATERF1(1)
                                                    --------->MYB46(3)       ------>NtERF2
                                            <---------ZAT14                 --------->DEAR3(1)
                              ------>ZmHOX2a(2)     --------->DEAR3(2)   --------->ANAC58
      --------->ARR14(2)    --------->ARR11(3)     ------->TEIL          --------->ANAC58
---DOF2                <----------DOF2      --------->ZAT14              --------->ANAC46
-ANAC58   ------>ZmHOX2a(1) <---------ARR11(3)--------->YAB1            --------->SPL7
-ANAC58   ===========================HOX2a_HOX2a  --------->MYB52(1)  <---------SPL7        <-------
 
tgagcatcgattcctctaagacgagtcttttgatcttgctctctcagtataatgaacggacgcccgaactcatcgaacgccagcgccattttcgagcttc  8688100
                       <---------TOE1(2)               <------ZmHOX2a(1)
                  --------->ARR11(3)                  ----------->GT1
                  <---------ARR14(2)                 ----------->GT1
                  <---------ARR11(3)             <---------ZAT14
                  --------->ARR14(2)             --------->ZAT14
                  --------->AGP1            --------->ZAT14                          <----------ID1
       <------ZmHOX2a(2)                    <---------ZAT18                 <----------ID1
   ------>ZmHOX2a(2)------>ZmHOX2a(2)       --------->ZAT18                 ----------->GT1
  <------ZmHOX2a(2) ===========================HOX2a_HOX2a                 ----------->GT1
 <---------ARR14(2)<------ZmHOX2a(2)        <---------ZAT14               ----------->GT1   >>>>>>>>
 --------->ARR14(2)============================HOX2a_HOX2a      --------->DAG2    --------->DAG2
--GLK1(2)         <---------AGP1        ------>ZmHOX2a(1)      ---------->DOF2   ---------->DOF2
 
tctcgatccgatcgaactatagatcttgggttttttttgtttcctagtgcactggagaggaaaaaaaaaagttgaaatggggaaaaaagcgagaagaaga  8688200
                 <----------DOF2
               --------->At4g35610
              *TSS ---------->DOF2
        --------->CCA1(2)                                                  <------------CBF
       <---------ARR14(2)                                        --------->TOE2(3)
       --------->ARR11(3)                                       --------->YAB1
       --------->ARR14(2)      ----------->GT1                --------->GLK1(2)
       <---------ARR11(3)      <---------ZAT6                <---------ARR14(2)
 --------->HSFB2a(2)   --------->ALFIN1--------->TOE2(3)     --------->ARR14(2)          <---------MYB59
 <---------HSFB2a(2)--------->DAG2     --------->TOE1(3)     <---------GLK1(2)    --------->ATHB12
>TBF1 <---------HSFB2a(1)    <---------ANAC46     <-------GAMYB ----------->GT1  <-------TEIL
 
atgtctggaagatttgagagcttaaagtggtcgagtgtaaaaccctaactcgctgttgatggcagaatcgtaaatcggaattgattcatgggcctaacaa  8688300
                                                                             <---------------AGL15
                                                                             <----------DOF2
                                                                        <------MYB46(1)
                                                                        <------MYB83
                                                                       --------->MYB59
                                                                   --------->ATHB51
                                                                   <---------ICU4
                                                  <---------AtLEC2<---------YAB1           ---------
                                                 <-------TEIL     --------->ICU4    --------->ANAC46
                 ---------->DOF2              --------->KAN4(1) --------->YAB1  --------->YAB1
       <----------DOF2   <---------At4g35610 <---------KAN4(2) <---------YAB1=======================
 
gacgtttgggcttatgggtttaaagcccatctgatataagatgaatagaatgttcatggcaatactatcataatttggttctttaataagacactcgtta  8688400
                                                        --------->ARR11(3)
                                                        --------->GLK1(2)
                                                        <---------ARR11(3)
                                                    --------->YAB1
                                                   <---------ATHB12
                                                  ------>MYB46(1)         <-------TEIL
                                                  ------>MYB83--------->ARR14(2)
                                        <---------TOE2(2)     <---------ARR11(3)  <---------TOE2(3)
                                <-------TEIL     --------->WOX13(1)       ----------------->AGL3
-->GT1                ----------->GT1   <---------TOE1(2)    <---------CCA1(2)    --------->MYB59
============================================================================================MADS_MADS
 
atacgacgatttgaagttgaacgaatggtttcatattcattcgcatgttcaccaatcaaaatctatatctgaacaagtccatttttaggtactccagtag  8688500
                         <---------ARR11(3)
                        --------->REM1(1)
                      ------>ZmHOX2a(1)             <---------YAB1
             --------->MYB59                     <---------AHL20(1)                   <-------TEIL
             <---------TOE2(3)                   <---------AHL20(2)              ----------->TBP
             <---------TOE1(3)                   --------->AHL20(2)      --------->ANAC46
 
atttacattggattgtaaggtaatcctacatcttagttcaaacgttttctattttatttttggtcttgatcacaaaacacaactatatatacatatcaaa  8688600
                   <---------ATHB12              <-----------GT1
                  --------->ANAC58         <---------AHL20(1)
                *TSS   <---------ATHB12    --------->AHL20(2)
               ------------>CBF            --------->AHL20(1)
              --------->YAB1               <---------AHL20(2)
           <---------ICU4                 <---------AHL20(2)--------->ANAC58
           --------->YAB1                 --------->AHL20(2)--------->ANAC58
          <---------ATHB12              --------->YAB1      --------->ANAC55(2)
          --------->ICU4           --------->TOE1(3)        <---------ANAC55(2)
        <---------GLK1(1)   --------->TOE1(3)  <---------AHL20(2)
        --------->GLK1(1)   --------->TOE2(3)  --------->AHL20(2)    <------ZmHOX2a(1)
   <---------LBD16--------->ANAC58 --------->TOE2(3)        --------->ANAC46              <------NtERF2
 
ctcatcttcggaaatcatcacaatcaataaacctcaaaccctaaaataaattaaacgagttctacgtaagaaggagagagagaagaatgggtcgccaaaa  8688700
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AGI:  At1g24510.1   
Description:  T-complex protein 1 epsilon subunit, putative / TCP-1-epsilon, putative / chaperonin, putative. Identical to T-complex protein 1 subunit epsilon [Arabidopsis Thaliana] (GB:O04450); similar to chaperonin, putative [Arabidopsis thaliana] (TAIR:AT3G18190.1); similar to T complex protein (GB:2206327A); similar to unnamed protein product [Vitis vinifera] (GB:CAO42466.1); similar to unknown [Populus trichocarpa] (GB:ABK93483.1); contains InterPro domain Chaperonin Cpn60; (InterPro:IPR001844); contains InterPro domain Chaperonin TCP-1, conserved site; (InterPro:IPR002194); contains InterPro domain Chaperonin Cpn60/TCP-1; (InterPro:IPR002423); conta
Range:  from: 8685259    to: 8688215    Orientation: Reverse
Links:  TAIR  MIPS 
 
AGI:  At1g24520.1   
Description:  BCP1 (Brassica campestris pollen protein 1). similar to bgp1 [Brassica rapa] (GB:CAA48292.1); contains domain PD015210 (PD015210)
Range:  from: 8688617    to: 8689255    Orientation: Forward
Links:  TAIR  MIPS 
 
 
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