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Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
 
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                                                                                        <---------ARR14(2)
                                                                                        --------->ARR14(2)
                                                                                       --------->GLK1(1)
                                                                                     <---------ANAC58
                                                                                --------->CCA1(2)
                                                             ----------->GT1   --------->ARR14(2) <-
                                                     --------->ANAC58          <---------ARR14(2)---
                         ---------->DOF2            --------->DAG2  <---------AHL20(2) <---------GLK1(1)
--------->AHL20(2)   --------->GLK1(1)             ---------->DOF2 --------->AHL20(2)<---------ANAC58
----->GT1            <---------GLK1(1)---------->DOF2--------->ANAC58          <---------GLK1(2) <--
 
aaaaaaaatcaaaaacaaaaatggaaatcaaagagaaacacaaaagaacatcaaaaaagcaaacttgttataaaatgatacagatttggggtatcccaaa  8595500
                                               --------->ANAC46
                                               --------->ANAC58
                                               --------->ANAC58
                                              --------->SPL7
                                           --------->ANAC58
                                           <---------ANAC58
                                           <---------ANAC58
                                          <-------TEIL
                                          --------->SPL7
                                          ------->TEIL
                                          --------------->AtSPL3
                                       <---------ANAC55(2)
                                       --------->ANAC46
                <---------------AGL15  --------->ANAC58 ----------->RAV1(1)
            <---------ANAC58           --------->ANAC55(2)
            <---------ANAC58 <---------YAB1--------->ANAC58
        <----------DOF2    --------->CCA1(2)--------->TOE1(2)
      ------>ZmHOX2a(1)   <---------ARR14(2)--------->TOE2(2)
   ---------->ID1         --------->ARR14(2)<---------SPL7   <-----------HVH21                  <---
   <-----------GT1       <------ZmHOX2a(1)<---------TOE1(2) --------->ANAC46           <---------ARR11(3)
  <-----------GT1    ---------->DOF2   --------->ANAC58--------->MYB46(3)            --------->ANAC58
--------AHL20(2)<----------DOF2        --------->ANAC55(1)<---------ALFIN1           --------->ANAC58
------>AHL20(2) ====================================================================================
-------AHL20(2) --------------->AGL15 <---------------AtSPL3--------->bZIP60(2)      --------->ANAC46
 
ttttttttcctctttgcttcttttaaaaggatatgatagaacacgtacgtacgacacaacaacacatcacagagagacccatacatacaagacatttttg  8595600
                                       --------->AHL20(2)
               --------->AHL20(2)     <---------AHL20(1)                                      ------
  --------------->AGL15               --------->AHL20(1)            --------->MYB46(3)   <----------DOF2
 --------->ANAC55(2)            --------->ANAC46       --------->CCA1(2)               --------->At4g35610
 <---------ANAC55(2)            --------->ANAC55(2)   <---------ARR11(3)               <---------At4g35610
------ZAT6 ------->TEIL <---------TOE2(3)             --------->ARR11(3)        <---------------AtSPL3
==================MADS_MADS   <---------YAB1   ---------->DOF2  --------->TOE1(1)   --------->SPL7
 
tgttacttaatatgtatataaaatgtttatgttataagtaatatatatacaaaagtagatatatacctcgaactactgcaaaactcgtacagctttcctc  8595700
                                                                                            <-------
                                                                                            <-------
                                                                                        <-----------HVH21
                                                                                        <-----------TGA1
                                                                                       --------->TGA1a
                                                                                       --------->ANAC58
                                                                                       --------->O2
                                                                                       --------->ANAC58
                                                                    --------->AtMYB61  --------->ANAC46
                                                              ===================================bZIP_DOF
                                                      <----------DOF2          ==================bZIP_DOF
                                                      ===========================================bZIP_DOF
>ZmHOX2a(1)<---------YAB1                ---------->DOF2      ---------->DOF2  <----------DOF2
 
tatttgagaagatgatgagagcaacttctgcatcacatagaactgaaagctcgtatgctttcttcaaaagaccattccttctctttgcaaacgtcacttg  8595800
                                                                               --------->TOE2(3)
                                                                             --------->ARR11(3)
                                                                             <---------ARR11(3)
                                                                            <---------CCA1(1)
                                                                            --------->CCA1(1)
                                                                            <---------RVE1(1)
                                                                            --------->GLK1(1)
     ------>ZmHOX2a(2)                                                      <---------GLK1(1)
     =====================HOX2a_HOX2a                                       --------->RVE1(1)
   --------->ARR11(3)                                                      --------->ARR11(3)
   <---------ARR11(3)        <-----------GT1                    ------>ZmHOX2a(1)
--ANAC58           ------>ZmHOX2a(1)                     <----------DOF2   <---------ARR11(3)     <-
--ANAC58       --------->ARR14(2)                  <----------DOF2     ---------->DOF2           *TSS
 
cctattgatcttgttctctatcctcttcaattctactctccctcttcccattttctttttctttctcctctcccaaaagatatctcaatctctctctctc  8595900
                      <---------AHL20(2)
         ------------>CBF
        --------->ANAC58                                                                        <---
        --------->ANAC46                                                                        <---
        --------->ANAC58     ------->TEIL                                                       <---
    --------->AtLEC2--------->AHL20(2)            <----------DOF2 <----------DOF2<<<<<<<<<GATA-1----
  <---------ANAC58  <-----------TBP           <----------DOF2  <-----------GT1  <-----------GT1<----
  <---------ANAC58  <---------AHL20(2)    <----------DOF2 <----------DOF2 <---------AHL20(2)   <----
---------DOF2     <-----------TBP     <----------DOF2 <----------DOF2   <---------AHL20(2) <--------
 
tctttccttgcaagcaattctatatatatatgagcctctctctttctttctttctttctttctttttttctttatattttttttatctatcttatattgc  8596000
      --------->ZAT18
      <---------ZAT18
    --------------->AtSPL8                                                 <---------ANAC55(2)
    <---------------AtSPL8                                                 <---------ANAC58
 ---------->DOF2                                                           <---------ANAC58
------DAG2                                                           <-------TEIL
------------AGL15                                                 <---------ZAT2
-------DOF2                                                       <---------At4g35610
----------->AGL15                            ---------->DOF2      --------->At4g35610
-----ANAC58                            --------->ZAT14            --------->ZAT2         <----------DOF2
-----ANAC58                        <---------ALFIN1        <---------ICU4  <---------ANAC46
----CBF       <-------TEIL      --------->ANAC46  <-------TEIL<-----------HVH21    <---------GLK1(2)
 
tttttaaagtgtacatatacatttgtacaaatctcacaacacttctctcaaagtacatataaacatgtcagcttcattacttgaaatattctctttctaa  8596100
                                   --------->ZAT18
                                   <---------ZAT18
                                  <---------ANAC58
                             <---------ICU4
                             -------->ATHB1
                             <--------ATHB1
                             --------->YAB1
                             --------->ATHB12
                             --------->ATHB51
                            --------->ICU4
                            <---------ATHB12
                            <---------ATHB51
                            <<<<<<<<<<AGL24
                            <<<<<<<<<<AGL20           <------ZmHOX2a(1)
                            <<<<<<<<<<AGL22         <---------TOE2(2)
                            <---------YAB1  <---------ARR11(3)
                         ------------>ATHB5 --------->ARR11(3)    <---------ICU4          --------->TOE2(3)
                      --------->ANAC46  ---------->DOF2   <---------AHL20(2)             -----------
                  <-----------GT1 <---------ANAC58  <---------TOE1(2)          ---------->DOF2  <---
 
tatactctcagactcaactatataccctccaattattgtgtaccaaagaccctcataggatttattcaaatattgcaaaattgaaagaaaaaatgttaat  8596200
                                         <----------DOF2                                           <
                   <-----------GT1     <---------ZAT18            ---------->DOF2                 --
               <---------CCA1(1)       <-------TEIL          --------->ICU4                       --
               <---------RVE1(1)    <------MYB46(1)        <---------ICU4                         --
              <---------ARR11(3)    <---------ANAC58    ============================================
              --------->ARR11(3)    <---------ANAC58    --------->ANAC55(2)                      ---
  --------->ARR14(2)      --------->TOE1(3)             <---------------AGL15          <---------ALFIN1
>GT1   --------->AtLEC2   --------->TOE2(3)             --------->ANAC46          <---------ZAT6----
--------GT1 ----------->ARR10       <------MYB83        --------->YAB1   ----------->GT1       -----
 
taccctatccatgcttagatattttcaaacctaaaaatttggtgcatttttgtgtttatacataattagtaaaggagagaaattagagttccactctcac  8596300
      <---------YAB1
  <----------DOF2
  <---------DAG2
---------ALFIN1
---->MYB83 <---------STY1(2)
---->MYB46(1)              <-----------GT1    <---------AHL20(2)
------>P   --------->STY1(2)               <<<<<<<<<<AGL24
=========================================================MADS_MADS          ---------->DOF2
-------->RAV1(1)     <---------AHL20(2)    <<<<<<<<<<AGL20                --------->ANAC58
----->AtMYB61    ----------->GT1           <<<<<<<<<<AGL22                --------->ANAC58   <------
---->MYB46(3)    <---------MYB46(3)    ----------------->AGL3  <---------YAB1           <----------DOF2
 
caacactttattctagctagtggtttaatttttcaatttcagtccatatttagtttagagaaaaatgtgattctgccaagaaagtttgatgcttttttac  8596400
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AGI:  At1g24260.1   
Description:  SEP3 (SEPALLATA3); transcription factor. Identical to Developmental protein SEPALLATA 3 (SEP3) [Arabidopsis Thaliana] (GB:O22456;GB:Q8GWQ4;GB:Q8L9R5); similar to SEP1 (SEPALLATA1), DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT5G15800.1); similar to Agamous-like MADS-box protein AGL9 homolog (MADS D) (GB:O04067); contains InterPro domain Transcription factor, MADS-box; (InterPro:IPR002100); contains InterPro domain Transcription factor, K-box; (InterPro:IPR002487)
Range:  from: 8593631    to: 8595898    Orientation: Reverse
Links:  TAIR  MIPS 
 
 
Please cite the corresponding publications when using AthaMap.

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