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Chromosome 1
Chromosome 2
Chromosome 3
Chromosome 4
Chromosome 5
Position
Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
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1 10 20 30 40 50 60 70 80 90 100
<---------
ARR14(2)
--------->
ARR14(2)
--------->
GLK1(1)
<---------
ANAC58
--------->
CCA1(2)
----------->
GT1
--------->
ARR14(2)
<-
--------->
ANAC58
<---------
ARR14(2)
---
---------->
DOF2
--------->
DAG2
<---------
AHL20(2)
<---------
GLK1(1)
--------->
AHL20(2)
--------->
GLK1(1)
---------->
DOF2
--------->
AHL20(2)
<---------
ANAC58
----->
GT1
<---------
GLK1(1)
---------->
DOF2
--------->
ANAC58
<---------
GLK1(2)
<--
aaaaaaaatcaaaaacaaaaatggaaatcaaagagaaacacaaaagaacatcaaaaaagcaaacttgttataaaatgatacagatttggggtatcccaaa
8595500
--------->
ANAC46
--------->
ANAC58
--------->
ANAC58
--------->
SPL7
--------->
ANAC58
<---------
ANAC58
<---------
ANAC58
<-------
TEIL
--------->
SPL7
------->
TEIL
--------------->
AtSPL3
<---------
ANAC55(2)
--------->
ANAC46
<---------------
AGL15
--------->
ANAC58
----------->
RAV1(1)
<---------
ANAC58
--------->
ANAC55(2)
<---------
ANAC58
<---------
YAB1
--------->
ANAC58
<----------
DOF2
--------->
CCA1(2)
--------->
TOE1(2)
------>
ZmHOX2a(1)
<---------
ARR14(2)
--------->
TOE2(2)
---------->
ID1
--------->
ARR14(2)
<---------
SPL7
<-----------
HVH21
<---
<-----------
GT1
<------
ZmHOX2a(1)
<---------
TOE1(2)
--------->
ANAC46
<---------
ARR11(3)
<-----------
GT1
---------->
DOF2
--------->
ANAC58
--------->
MYB46(3)
--------->
ANAC58
--------
AHL20(2)
<----------
DOF2
--------->
ANAC55(1)
<---------
ALFIN1
--------->
ANAC58
------>
AHL20(2)
====================================================================================
-------
AHL20(2)
--------------->
AGL15
<---------------
AtSPL3
--------->
bZIP60(2)
--------->
ANAC46
ttttttttcctctttgcttcttttaaaaggatatgatagaacacgtacgtacgacacaacaacacatcacagagagacccatacatacaagacatttttg
8595600
--------->
AHL20(2)
--------->
AHL20(2)
<---------
AHL20(1)
------
--------------->
AGL15
--------->
AHL20(1)
--------->
MYB46(3)
<----------
DOF2
--------->
ANAC55(2)
--------->
ANAC46
--------->
CCA1(2)
--------->
At4g35610
<---------
ANAC55(2)
--------->
ANAC55(2)
<---------
ARR11(3)
<---------
At4g35610
------
ZAT6
------->
TEIL
<---------
TOE2(3)
--------->
ARR11(3)
<---------------
AtSPL3
==================
MADS_MADS
<---------
YAB1
---------->
DOF2
--------->
TOE1(1)
--------->
SPL7
tgttacttaatatgtatataaaatgtttatgttataagtaatatatatacaaaagtagatatatac
ctcgaactactgcaaaactcgtacagctttcctc
8595700
<-------
<-------
<-----------
HVH21
<-----------
TGA1
--------->
TGA1a
--------->
ANAC58
--------->
O2
--------->
ANAC58
--------->
AtMYB61
--------->
ANAC46
===================================
bZIP_DOF
<----------
DOF2
==================
bZIP_DOF
===========================================
bZIP_DOF
>
ZmHOX2a(1)
<---------
YAB1
---------->
DOF2
---------->
DOF2
<----------
DOF2
tatttgagaagatgatgagagcaacttctgcatcacatagaactgaaagctcgtatgctttcttcaaaagaccattccttctctttgcaaacgtcacttg
8595800
--------->
TOE2(3)
--------->
ARR11(3)
<---------
ARR11(3)
<---------
CCA1(1)
--------->
CCA1(1)
<---------
RVE1(1)
--------->
GLK1(1)
------>
ZmHOX2a(2)
<---------
GLK1(1)
=====================
HOX2a_HOX2a
--------->
RVE1(1)
--------->
ARR11(3)
--------->
ARR11(3)
<---------
ARR11(3)
<-----------
GT1
------>
ZmHOX2a(1)
--
ANAC58
------>
ZmHOX2a(1)
<----------
DOF2
<---------
ARR11(3)
<-
--
ANAC58
--------->
ARR14(2)
<----------
DOF2
---------->
DOF2
*
TSS
cctattgatcttgttctctatcctcttcaattctactctccctcttcccat
tttctttttctttctcctctcccaaaagatatctcaatctctctctc
tc
8595900
<---------
AHL20(2)
------------>
CBF
--------->
ANAC58
<---
--------->
ANAC46
<---
--------->
ANAC58
------->
TEIL
<---
--------->
AtLEC2
--------->
AHL20(2)
<----------
DOF2
<----------
DOF2
<<<<<<<<<
GATA-1
----
<---------
ANAC58
<-----------
TBP
<----------
DOF2
<-----------
GT1
<-----------
GT1
<----
<---------
ANAC58
<---------
AHL20(2)
<----------
DOF2
<----------
DOF2
<---------
AHL20(2)
<----
---------
DOF2
<-----------
TBP
<----------
DOF2
<----------
DOF2
<---------
AHL20(2)
<--------
tctttccttgcaagcaattctatatatatatgagcctctctctttctttctttctttctttctttttttctttatattttttttatctatcttatattgc
8596000
--------->
ZAT18
<---------
ZAT18
--------------->
AtSPL8
<---------
ANAC55(2)
<---------------
AtSPL8
<---------
ANAC58
---------->
DOF2
<---------
ANAC58
------
DAG2
<-------
TEIL
------------
AGL15
<---------
ZAT2
-------
DOF2
<---------
At4g35610
----------->
AGL15
---------->
DOF2
--------->
At4g35610
-----
ANAC58
--------->
ZAT14
--------->
ZAT2
<----------
DOF2
-----
ANAC58
<---------
ALFIN1
<---------
ICU4
<---------
ANAC46
----
CBF
<-------
TEIL
--------->
ANAC46
<-------
TEIL
<-----------
HVH21
<---------
GLK1(2)
tttttaaagtgtacatatacatttgtacaaatctcacaacacttctctcaaagtacatataaacatgtcagcttcattacttgaaatattctctttctaa
8596100
--------->
ZAT18
<---------
ZAT18
<---------
ANAC58
<---------
ICU4
-------->
ATHB1
<--------
ATHB1
--------->
YAB1
--------->
ATHB12
--------->
ATHB51
--------->
ICU4
<---------
ATHB12
<---------
ATHB51
<<<<<<<<<<
AGL24
<<<<<<<<<<
AGL20
<------
ZmHOX2a(1)
<<<<<<<<<<
AGL22
<---------
TOE2(2)
<---------
YAB1
<---------
ARR11(3)
------------>
ATHB5
--------->
ARR11(3)
<---------
ICU4
--------->
TOE2(3)
--------->
ANAC46
---------->
DOF2
<---------
AHL20(2)
-----------
<-----------
GT1
<---------
ANAC58
<---------
TOE1(2)
---------->
DOF2
<---
tatactctcagactcaactatataccctccaattattgtgtaccaaagaccctcataggatttattcaaatattgcaaaattgaaagaaaaaatgttaat
8596200
<----------
DOF2
<
<-----------
GT1
<---------
ZAT18
---------->
DOF2
--
<---------
CCA1(1)
<-------
TEIL
--------->
ICU4
--
<---------
RVE1(1)
<------
MYB46(1)
<---------
ICU4
--
<---------
ARR11(3)
<---------
ANAC58
============================================
--------->
ARR11(3)
<---------
ANAC58
--------->
ANAC55(2)
---
--------->
ARR14(2)
--------->
TOE1(3)
<---------------
AGL15
<---------
ALFIN1
>
GT1
--------->
AtLEC2
--------->
TOE2(3)
--------->
ANAC46
<---------
ZAT6
----
--------
GT1
----------->
ARR10
<------
MYB83
--------->
YAB1
----------->
GT1
-----
taccctatccatgcttagatattttcaaacctaaaaatttggtgcatttttgtgtttatacataattagtaaaggagagaaattagagttccactctcac
8596300
<---------
YAB1
<----------
DOF2
<---------
DAG2
---------
ALFIN1
---->
MYB83
<---------
STY1(2)
---->
MYB46(1)
<-----------
GT1
<---------
AHL20(2)
------>
P
--------->
STY1(2)
<<<<<<<<<<
AGL24
=========================================================
MADS_MADS
---------->
DOF2
-------->
RAV1(1)
<---------
AHL20(2)
<<<<<<<<<<
AGL20
--------->
ANAC58
----->
AtMYB61
----------->
GT1
<<<<<<<<<<
AGL22
--------->
ANAC58
<------
---->
MYB46(3)
<---------
MYB46(3)
----------------->
AGL3
<---------
YAB1
<----------
DOF2
caacactttattctagctagtggtttaatttttcaatttcagtccatatttagtttagagaaaaatgtgattctgccaagaaagtttgatgcttttttac
8596400
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AGI:
At1g24260.1
Description:
SEP3 (SEPALLATA3); transcription factor. Identical to Developmental protein SEPALLATA 3 (SEP3) [Arabidopsis Thaliana] (GB:O22456;GB:Q8GWQ4;GB:Q8L9R5); similar to SEP1 (SEPALLATA1), DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT5G15800.1); similar to Agamous-like MADS-box protein AGL9 homolog (MADS D) (GB:O04067); contains InterPro domain Transcription factor, MADS-box; (InterPro:IPR002100); contains InterPro domain Transcription factor, K-box; (InterPro:IPR002487)
Range:
from: 8593631
to: 8595898
Orientation: Reverse
Links:
TAIR
MIPS
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publications
when using AthaMap.
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