Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                           =======================bZIP_DOF                                                                         <---------ANAC58                                                                         <---------bZIP60(2)                                                                         <---------TGA1a                  ------->TEIL                                           <---------ANAC46             --------->CCA1(2)                                           <---------ANAC58            --------->ARR14(2)                                        ----------->HVH21     <---------ANAC58                                         --------->ZAT14  <---------ANAC58     <---------ANAC58                                --------->At5g28300 <---------O2---------->DOF2     <---------ANAC46                            --------->MYB52(1)  <---------WOX13(1)--------->DAG2 -----------RAV1(1)    --------->At5g28300 <---------ZAT2     <---------ZAT14  <---------ANAC58 >ZAT18     <---------ARR14(2)            --------->ANAC58   <----------DOF2   <---------ANAC46 -ZAT18     <---------ARR11(3)            --------->ANAC58   ======================bZIP_DOF<-------TEIL   atatgttgcttgcagatatgtatgcagtaactggttcttggagcaagcttgtaacggtgaagactttactgagtgacttgggcgtgcaaaaggctcatga  8078900                 --------->ARR14(2)                                                   <-----------RAV1(2)                 <---------GLK1(2)                                              ---------->DOF2                 --------->ARR11(1)                                         <------ZmHOX2a(1)                 <---------ARR14(2)                                      --------->YAB1   <----------DOF2 <-------TEIL                                          <-----------RAV1(2)        <  <---------ANAC58--------->GLK1(2)             --------->At4g35610   --------->WOX13(1)<---------At4g35610  <---------ANAC58--------->ARR14(1)    --------->YAB1   <---------YAB1 <---------ATHB12--------->At4g35610   gtttgctttgatggaaacagattcggagttagatggagagaataataagccgatgaacgatgattctgtcatcaatcaggagcaaagttcagatgaagaa  8079000                                        <---------AHL20(1)                                        --------->AHL20(1)                                          <             <------ZmHOX2a(1)<---------YAB1                              <---------ARR11(3)        <    <---------HSFB2a(2)    --------->GLK1(2)                              --------->ARR11(3)        <    --------->HSFB2a(2)   <---------GLK1(2)<---------AHL20(2)   --------------->AtSPL8        <------ ---------ANAC46---------->DOF2         --------->AHL20(2)--------->GLK1(2)                   <------   cgtcttgtagaagtaggataaagaatcaaattctgatagaaatattttatcaaactggagaatcaatttgtacataaatcttatatacaacaagttttaa  8079100          ------>ZmHOX2a(1)     <---------GLK1(1)     --------->GLK1(1)   --------->ATHB12                                 --------->ANAC58 ---------ANAC58                                    --------->ANAC58           --------->AHL20(2) ---------ANAC58                         <------MYB46(1)<---------YAB1         <-----------TBP     -- ---------AtLEC2                         <------MYB83--------->ICU4--------->YAB1            -------- ---YAB1<---------ANAC46  <---------AtLEC2    ------>ZmHOX2a(1)  --------->ANAC58         --------->AHL20(2) ---AHL20(2)    --------->YAB1          <---------AtMYB61        --------->ANAC58         <---------AHL20(2)   ttgcatgatttcctgtaaacataagtttacatgaactaggggatggtccttcgcaagtatgagtaacaagcataaacagcattatatatgaaataaatat  8079200                                                                                                  <--                                            --------------->AGL15                                 ---                                            <---------------AGL15                                ----                                            <----------DOF2                                      ----                                     --------->ARR14(2)                                      --------     --------->TOE2(3)               <---------ARR11(3)                                 --------->HSFB2a(1)     --------->AtMYB61               <---------ARR14(2)                                 <---------HSFC1(2)  <---------ALFIN1            <------------CBF                                          --------->HSFC1(2) --------->ZAT18             --------->ATHB12                           --------->At5g28300  <------- --------->DEAR3(1)         <---------YAB1  <---------DAG2    <----------DOF2           <---------HSFB2a(1) ------->PCF2               <---------TOE2(3)                 <---------DAG2         <------ZmHOX2a(1) ->ICU4             --------->PCF2   --------->ARR11(3)  <-----------HVH21  *TSS   <---------TOE2(3)   gagcccacctaaacccattaagggcccattaagattggagatactgcttttttaagagaggtcactttttccacagtgaaaccctaaggaaacttcggca  8079300                         <---------ICU4                         --------->YAB1                        <---------ATHB12                        <---------YAB1                        --------->ICU4                    --------->LBD16                        --------->ANAC58                       ---                   <---------ANAC46                        --------->ANAC58                       <--                   <---------ANAC58                   <---------At4g35610          <---------REM1(1)        --------->CCA1(2)<--------HAHB4               --------->At4g35610  <------NtERF2         ====   --------->LBD16 <---------ANAC55(2)              <---------CCA1(2)    <---------bZIP60(1)     ==== -------ZAT2       --------->ANAC55(2)            <---------ANAC55(2)    <---------ANAC58  --------->DEAR3(1) ------>At4g35610  <---------ANAC58               <---------ANAC58       --------->bZIP60(1)     <--- ----->ANAC58      <---------ANAC55(1)            <---------ANAC58       <---------ANAC46  --------->AtMYB61 ----->ANAC58  <---------GLK1(1)                  <---------ANAC46       <---------ANAC58  <---------ALFIN1 ->HSFB2a(2)   --------->GLK1(1)                ------>ZmHOX2a(2) --------->AHL20(2)      --------->MYB46(3) --HSFB2a(2)  --------->HSFB2a(1)           ------>ZmHOX2a(1)----------->GT1<---------ANAC46---------   agctccagagaaacgagagttccgtaatcattttctcttgttgttcctgatcgcgtagctcaagcgaaaaaaatggcgtcgtttgatgaagcaccaccag  8079400                                                                     <-----------HVH21                                                                    <---------DEAR3(2)                      =============HOX2a_HOX2a                     --------->DEAR3(1)                      ------>ZmHOX2a(2)                           --------->DEAR4(2)                     <------ZmHOX2a(2)                            <------NtERF2                     ==============HOX2a_HOX2a                    --------->ATERF1(1)                    --------->ARR11(3)                           <---------RAP2.3(1)           --------->At4g35610                                   <---------DEAR4(2)           <---------DEAR3(2)                                    ------>NtERF2          <---------DEAR3(1)        <---------ZAT18             --------->DEAR3(1)         <---------ORA47(1) <------ZmHOX2a(1)                   <---------DEAR3(1) --------->ANAC58   <---------ARR11(3)                         <---------ABI4(2) --------->ANAC58   <---------ARR14(2)                         --------->RAP2.3(1) <----------ID1     <---------ARR14(3)<---------At4g35610      --------->ATERF1(1) --------->ANAC46   --------->ARR14(2)--------->At4g35610   <-----------RAV1(2) ------>ARR14(2)    <-----------ARR10 --------->ZAT18      --------->ZAT2 -------ARR14(2)    --------->ARR14(3)<---------ZAT14      <---------ZAT2 ===========================HOX2a_HOX2a          <---------ALFIN1<---------ATERF1(1) ============================HOX2a_HOX2a     <-----------HVH21<---------ATERF1(1) ---ZmHOX2a(1)    ----------->ARR10 --------->ZAT14  <-----------HVH21                           ---- -->RAV1(1)<---------At4g35610      --------->ZAT18 --------->DEAR3(1)                <-----------GT1   gaaacgccaaggccggtgagaagatcttcaggaccaagtgtgctcagtgtcacaccgtcgaagcaggcgccggtcacaaacaaggttttcactcatcgat  8079500                           <--------P                           <---------WOX13(1)                                     <---------YAB1                         <---------MYB46(3)            <-----------GT1        <----------DOF2                        <---------TOE2(3)            <---------YAB1   <-----------GT1 -->ZmHOX2a(2)          <---------YAB1   <---------AHL20(2)    <----------DOF2<---------DAG2   ctctctcactcttgaattctatttctatggttgattttcgcaatttatctgaatttttatcgggcctttgttttacatcgctttataatcgatttgttca  8079600                                                             ------>ZmHOX2a(2)                                                        ------>ZmHOX2a(2)                                                       <------ZmHOX2a(2)                                                      <---------ARR14(2)                                    <---------HSFC1(2)<---------AGP1                                  --------->ARR14(2)  --------->AGP1                                  <---------GLK1(2)   --------->ARR11(3)                       ------>ZmHOX2a(2)              <---------ARR11(3)                          <--          --------->RVE1(1)       <---------ARR14(2)  --------->ARR14(2)                          ---         --------->GLK1(2)   <---------DOF5.7(2)<------ZmHOX2a(2)                                <---         <---------ARR11(3)  --------->MYB52(1)--------->ARR11(3)                             ------>ZmHOX2a(1)         --------->ARR11(3) <---------WRKY38(1)<---------ARR11(3)                            --------    --------->YAB1   --------->ARR11(3)<---------------------WRI1    --------->TOE2(3)       -------- --------->WOX13(1)----------->HVH21<---------HSFB2a(1)--------->CCA1(2)                   <---------YAB1   tgttaatcaaaaatctctgatgtgatctggttaacggattcttcgattagatcatagatctgatccaataacctcgatgtcttactcgtgtttatcctta  8079700                                                                                                    -     <---------At4g35610                                                                            <     --------->At4g35610                              <----------DOF2     <---------HSFB2a(2)       < -------ARR11(3)       ------->TEIL               ---------->ID1          --------->HSFB2a(2)     --- ------>ARR11(3) ----------->HVH21       <-----------GT1              <---------GLK1(2)   -------->HAHB4 ------CCA1(2)  <-------MYC3         --------->AHL20(2)     <---------LBD16               --------->YAB1 ->TOE2(3)      ------->MYC3  <---------TOE1(3)<---------DAG2--------->HSFB2a(2)         --------->ICU4 ->TOE1(3)    ------->TEIL    <---------TOE2(3)<----------DOF2  <---------ARR14(2)       <---------YAB1   aatcttcagctcaatgcatgtgacgaatttctgaggtttttatatacaacttttcgcatttttgtggaacttgattctcgaattctaagtaatgatacaa  8079800  Previous    Next  AGI:  At1g22830.1    Description:  pentatricopeptide (PPR) repeat-containing protein. similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT1G71490.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN80898.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO16279.1); contains InterPro domain Pentatricopeptide repeat (InterPro:IPR002885) Range:  from: 8076562    to: 8079080    Orientation: Forward Links:  TAIR  MIPS    AGI:  At1g22840.1    Description:  ATCYTC-A/CYTC-1 (CYTOCHROME C-1); electron carrier. Identical to Probable cytochrome c At1g22840 [Arabidopsis Thaliana] (GB:O23138); similar to CYTC-2 (CYTOCHROME C-2), electron carrier [Arabidopsis thaliana] (TAIR:AT4G10040.1); similar to Cytochrome c (GB:P62772); contains InterPro domain Cytochrome c, class IA/ IB; (InterPro:IPR002327); contains InterPro domain Cytochrome c, monohaem; (InterPro:IPR009056); contains InterPro domain Cytochrome c, class I; (InterPro:IPR003088) Range:  from: 8079276    to: 8080563    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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