Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100          --------------->AtSPL8       --------->At4g35610                  <----------DOF2       <---------At4g35610                  <---------DAG2  --------->GLK1(1)                       ------>MYB83  <---------GLK1(1)                       ------>MYB46(1) -------HSFB2a(2)                        <---------ALFIN1 ------>HSFB2a(2)                       --------->MYB46(3) ------LBD16                   --------->MYB52(1) --->ARR14(2)                  --------->YAB1 ----ARR14(2)           ---------->ID1 --------->ANAC58 --RAP2.3(1)     <---------ARR11(3)    --------->ANAC58 -DEAR3(1)<---------ZAT14     <---------ATHB12 -RAP2.3(2)     <---------CCA1(2)     --------->PCF2  ----------->GT1                              --   cgggaactcggctgtactatatccttgtcccaataacgagcacccacttttgtttttggtaaattttagttctctagacaaaacatttggacgtagacca  8067500                                                                            <---------GLK1(1)                                                                      <-------GAMYB                                                   --------->ANAC58  <---------DEAR3(1)                                                ----------->TGA1  --------->DEAR3(1)                                                ----------->HVH21 --------->DREB2C(2)                  <-------GAMYB         <---------YAB1          --------->MYB52(1)                 <---------MYB46(3)   <---------ICU4           <---------ALFIN1        <---------AHL20(2)            --------->ATHB12        <---------MYB55(2)        --------->AHL20(2)            --------->YAB1          --------->MYB46(3)      --------->AHL20(2)              -------->HAHB4    <---------ATHB12   <---------ARR14(2)     <---------ARR11(3)              <---------YAB1--------->ANAC46  <---------ANAC46     <---------AHL20(1)              --------->ICU4--------->ANAC58--------->LBD16            <------     --------->ARR11(3)      --------->ICU4    <---------WOX13(1)--------->DEAR3(2)     <---------DEAR3(1) ------->YAB1    --------->MYB52(2)  <---------ATHB12 --------->WOX13(1)   --------->ARR14(2)<-------   agaagaatatatatatagtttgttgtatgtaatgttgtaatgatgagtgactgacgcaatcactcccaccggcgttggatttgctctcgctcggtgtctt  8067600                          --------->AHL20(2)                       <---------ANAC46 <---------ARR14(2) <-----------GT1          <---------AHL20(2)                <---------ANAC58   <---------ANAC46 ---ANAC46      --------------->AtSPL8  --------->At4g35610 <---------ANAC58 <---------ZAT14 -------- ----------------TaNAC69(2)   ----------->TGA1  <----------DOF2 <---------MYB46(3)  --------->ARR14(2)   atataactcaacctcttctctgtacattttaaatgacgaagtagctcaatctttttttttgtgcgtctggtgtttagtcttcagtggattctaaatcgta  8067700                                                                          --------->ARR11(3)                                                                <------------CBF                                      --------->ARR14(2)      <---------TOE2(3)                                      <---------ARR14(2)      <---------YAB1                             <---------ICU4                 --------->AHL20(2)             <---------                           --------->ANAC55(2)              <---------AHL20(2)           <---------AHL20(2)                 <-----------GT1    --------->LBD16        --------->AHL20(2)  <---------AHL20(2)      ----------->GT1    <-----------GT1                --------->ICU4    <---------ARR11(3) ->YAB1 ----------->GT1  <---------AHL20(2)        ----------->GT1    ---------->DOF2    --------->AHL20(2)   atgtatagaagtgaaaaatttacaaatttacttatttccgaatactcttaaaacagcaaaaattaatattgcaaaagataatttatagtattttaatctt  8067800                                                         <------MYB46(1)                                                 <-------TEIL       --------->TOE1(3)                                              --------->At4g35610   --------->TOE2(3)                             ----------->GT1<------ZmHOX2a(1)<------MYB46(1)                     <---                      --------->At5g28300<-----------RAV1(2) <------MYB83                   ---------                 ---------->DOF2        --------->MYB52(1) <--------P                    ------->GAMYB              --------->TOE2(3)    <---------AHL20(2)   --------->MYB59               <-----------GT1  ------>ZmHOX2a(1)  ----------->GT1<-----------GT1     <---------TOE2(3)       ------>NtERF2    ---- --GT1        <---------------AGL15--------->AHL20(2)*TSS<------MYB83           <---------At4g35610   tttcctccaaaaaaaacattaaagggtaaattagtaattaactacaggagcttcatattaggttggaaaaccctaaatatgccgcttataacagacctga  8067900                    --------->LBD16                 ------>NtERF2               --------->ATERF1(1)               --------->RAP2.3(1)               --------->ERF1               <------NtERF2              <---------RAP2.3(1)              ------>NtERF2              <---------ATERF1(1)              <---------RRTF1(1)             <---------ANAC58             <---------RAP2.3(2)                                      <---------------AGL15             <---------ANAC58                                         --------------->AGL15             <---------ANAC46                                        ----------------->AGL3             <---------PCF2                                          <-----------------AGL2            --------->ATERF1(1)                                      ================================            <------NtERF2                                            ----------------->AGL2            --------->RAP2.3(1)                                      <-----------------AGL3           <---------ATERF1(1)                                       <-----------------AGL1           <---------ERF1                                            ----------------->AGL1          <---------RAP2.3(3)                             <----------DOF2          --------->ALFIN1                               ------>ZmHOX2a(2)          <---------DEAR3(1)                            <------ZmHOX2a(2)        <---------MYB46(3)                      ================HOX2a_HOX2a       --------->ALFIN1                         ------>ZmHOX2a(1)<------NtERF2         <---------YAB1       <---------AtMYB61   ----------->GT1   ------>ZmHOX2a(1)<---------LBD16       <---------YAB1   --------->At4g35610 --------->GLK1(2)     ==================HOX2a_HOX2a       <---------YAB1   <---------At4g35610<---------GLK1(2)      ===================HOX2a_HOX2a     --------->SPL7 ------At4g35610--------->RAP2.3(3)<---------ARR11(3)  <---------ARR11(3)   <---------------AtSPL8 -->RAV1(2)<---------RAP2.3(1) ---------->DOF2  ===============HOX2a_HOX2a  <---------------AtSPL3 ----->At4g35610--------->DEAR3(1) --------->ARR11(3)  --------->ARR11(3)   --------------->AtSPL8   gcttaagctgtggtggcgcctccagagtctggtaaaagagcttaatcctcctctcgcgatctttctcggcatccaaaaatggtacgattatcgttcttca  8068000                                                   <---------YAB1                              --------------------->WRI1                           <----------DOF2  <---------TOE1(2)                       <-------MYC2    <---------ARR14(2)                       <-------MYC3    --------->ARR14(2) --------------->AGL15                       <-------PIF5   <---------CCA1(2)  <-----------------AG                       ------->PIF5 <---------ANAC58     <---------ANAC58                       ------->MYC2 --------->ANAC55(2)  <---------ANAC58                       ------->MYC3 <---------ANAC58     <-----------------AGL2                    <---------ANAC58<---------ANAC55(2)  <---------ANAC46        <---------At4g35610                    <---------ANAC58<---------ANAC46--------->ATHB12             --------->At4g35610 =========================================================================MADS_MADS   actcttgtctggttctccaattgctcgtgcttcattttgcgtatcgctcgtttttcattgctggttttgggattggagttttaagctcaaatgttttttg  8068100                            ------>ZmHOX2a(2)                           <------ZmHOX2a(2)                          <---------AGP1                  --------->REM1(2)                          ------->TEIL               --------->ALFIN1                          <---------ARR14(2)     <---------ANAC58                          --------->ARR14(2)  --------->ARR14(2)                                  <--                          --------->GLK1(2)   <---------ARR14(2)                                  <--                     --------->MYB52(1)    <---------ANAC58                                 ---------                    ----------->HVH21      <---------ANAC46                                 ---------                   <---------MYB52(2)      <---------ANAC58             <---------ANAC58    <--------                <---------RAP2.6(2)       ---------->ID1  <---------ZAT14                  <---------           <---------ARR14(2)            <-----------GT1  --------->ZAT14       <------ZmHOX2a(1) <--           --------->ARR14(2)  <---------MYB52(1)<---------ANAC58       <---------ANAC58<---------At4g35610   tattcccttacacgatttgcgactgacggatctgttttttttttttcgtattcgtgtgtgtgtagtctctagttgcgaacgaggagtttcagcatattct  8068200   --------->ZAT18                             --------->WRKY38(1)   --------->At4g35610                         --------->WRKY45   <---------At4g35610                         ----------->HVH21 -------ANAC58                                 --------->WRKY12 -------ANAC58                  <---------AHL20(2)      <---------ATHB12 >ARR14(2)                --------->ANAC58   <----------DOF2 >KAN4(2)                 --------->ANAC58  <---------ANAC58 -ARR14(2)   <---------ICU4     --------->AHL20(2) --------->TOE2(3)                     <---------ANAC58 -TaMYB80 --------->YAB1  ----------->GT1   <---------ANAC58                             <---------ANAC46 -------ANAC46    --------->ETT(2)    <---------YAB1  --------->WOX13(1)   <-------GAMYB <---------ANAC58   gcgtgtgctcaatactaatgtcgatgggaagcaaaaaattatgtttgctttgacctcaatcaagggtattggaaggcgattggctaacattgtgtgcaag  8068300                                                                                               <-----                                       <------MYB83                              <------ZmHOX2a(1)                                       <------MYB46(1)                         <---------TOE2(3)                                    <---------ANAC58               --------->GLK1(1)           <-----                                    <---------ANAC58             <------ZmHOX2a(1)       ------->TEIL                                   <---------ZAT2        <---------MYB52(1)    <---------TOE1(3)                                   --------->ZAT2  <----------DOF2 <---------GLK1(1)  <---------YAB1<                          --------->MYB52(2)     <---------ICU4<---------TOE2(3)--------->ICU4 <-----   aaggctgatgttgacatgaacaagaggtttgtttcttagcttggttcttaatactttcagttacttaggaattctatggataaggattatgaatcttgcg  8068400  Previous    Next  AGI:  At1g22770.1    Description:  GI (GIGANTEA); binding. Identical to Protein GIGANTEA (GI) [Arabidopsis Thaliana] (GB:Q9SQI2;GB:O64381;GB:O80545;GB:Q9S7N0); similar to LATE BLOOMER 1 [Pisum sativum] (GB:ABP81863.1); similar to GIGANTEA [Arabidopsis lyrata subsp. petraea] (GB:ABP96481.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN81809.1); contains InterPro domain Armadillo-type fold; (InterPro:IPR016024) Range:  from: 8061833    to: 8067705    Orientation: Forward Links:  TAIR  MIPS    AGI:  At1g22780.1    Description:  PFL (POINTED FIRST LEAVES); structural constituent of ribosome. Identical to 40S ribosomal protein S18 (RPS18C) [Arabidopsis Thaliana] (GB:P34788;GB:Q94K22); similar to 40S ribosomal protein S18 (RPS18B) [Arabidopsis thaliana] (TAIR:AT1G34030.1); similar to RPS18C (S18 RIBOSOMAL PROTEIN), structural constituent of ribosome [Arabidopsis thaliana] (TAIR:AT4G09800.1); similar to unknown [Populus trichocarpa] (GB:ABK92692.1); contains InterPro domain Ribosomal protein S13-like, H2TH; (InterPro:IPR010979); contains InterPro domain Ribosomal protein S13; (InterPro:IPR001892) Range:  from: 8067853    to: 8069331    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version