Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                     --                                                                                               ------                                                                                               ------                                                                                               <-----              <---------ETT(2)                                                                 <-----              ----------->HVH21                                                                ------  ------>NtERF2                                                                               -------  --------->LBD16      --------->O2                   <---------ANAC46                       <------- <---------LBD16       <---------O2                   <---------ANAC58             ------>ZmHOX2a(1) ---------LBD16    <------NtERF2                      <---------ANAC58          ------>ZmHOX2a(1)<--- ------>ARR14(2)  ------>NtERF2                 ------>ZmHOX2a(2)  <---------ARR14(2)       --------- -------ARR14(2) <---------DEAR3(1)        --------->HSFB2a(2)     <---------GLK1(2)      <---------LBD16 --At4g35610  --------->ETT(2)             <---------HSFB2a(2)     --------->ARR14(2)    ------>ZmHOX2a(1)   tttccggcgatttctctcgacggcgatgtgagtcattctctggttctcgatctcttccttgttcttgcagtttctcgttctcctcctcttcctccggtgc  7940200                                                                               --------->YAB1    <------ZmHOX2a(1)                                                       --------->YAB1 ------->ALFIN1                                                        --------->ARR14(2) --->ABI4(2)                                                           --------->ARR11(3)           = --->ZAT14                               <---------ARR11(3)           <------ZmHOX2a(1)             - ----ZAT14                               --------->ARR11(3)         <---------TOE2(3)  --------->ANAC58 ----ZAT2                       --------->SPL7                    ---------->DOF2      --------->ANAC58 --->ZAT2                     --------->At5g28300            <------ZmHOX2a(2)<---------YAB1      <-- -->ALFIN1                    <------NtERF2                  ================HOX2a_HOX2a          --- --MYB52(1)        --------->ANAC46    ------>MYB83  <---------MYB52(2)<---------ARR14(2)       <---- ------ANAC46    <---------ALFIN1      ------>MYB46(1) --------->MYB52(1)  --------->ICU4     ------- >LBD16<------ZmHOX2a(1)    <---------ANAC46       --------->MYB52(1) ===============================   tgtggaggaggatgactctccacatcaatggcggtaagaccaagctcttctcccaacgaagggatcaacaaaggatactgatgatagtctcgccattgat  7940300                                                                       <---------At4g35610     ------>ZmHOX2a(1)                                          --------->ARR11(3) ==============HOX2a_HOX2a                                      <---------ARR11(1) ----->ZmHOX2a(2)                                               --------->ARR14(2) -------ARR11(3)                                                ------->TEIL ------>ARR11(3)      ---------->DOF2              <-----------RAV1(1) --------->At4g35610 -----YAB1           --------->ANAC46          <---------YAB1   <---------ARR14(2)                 <- -->YAB1------>ZmHOX2a(1)                 >>>>>>>>>MYB98       <---------ARR14(1)                  <- ======HOX2a_HOX2a <---------HSFB2a(2) <---------MYB59         <---------CCA1(2)                   <-   gatcgtcctccttaccttgttccacaaagctctgttcatgccctaacttatcaatgttgttcttcgtatcttgagctacgaactcttcttgagagtataa  7940400                                               <---------LBD16                                            ------>ZmHOX2a(2)                                          ------->TEIL  --------->ANAC58                                          <---------ARR14(2)                                          <---------AGP1--------->ANAC58                                          --------->ARR11(3)                                          <---------ARR11(3)              <---------ICU4              --------->ARR14(2)            <-----------ARR10   <---------ARR14(2)      --------->ANAC46            <---------ARR11(3)  --------->ARR14(2)   <---------ARR14(2)            --------->ARR11(3) <---------GLK1(1)     --------->ARR14(2)                         -----         --------->AHL20(2)    --------->CCA1(2) --------->LBD16                          <---------MYB46(3) --------ANAC58                --------->GLK1(1)<---------ANAC58                     <------NtERF2 --------ANAC58               <---------ARR11(3)<---------ANAC58                    --------->LBD16 --------ANAC46               --------->ARR11(3)<---------ANAC46                  <---------LBD16 ---   gtcgtggaacataaaatctttgcaattggagagatatccgaatggatcttgcgggtatacgacagcctctaagggcattttttagccggagattgttgaa  7940500                                                                                              -------                ----------->GT1                                                             <-------- ----->DOF2 --------->ICU4     --------->ATHB12                                     <------ZmHOX2a(1) -------->GT1  <---------TOE2(3)       <---------ARR14(2)    <------ZmHOX2a(1)   *TSS   --------->ALFIN1   aagaaaaattcagaattatggaaaaaataagaaagattgagaaaccgagagagggagagagaaggagagaaaacaaaatttagacaggaagtgtttgtcg  7940600                                                                                                  <--                                                ---------->DOF2                                 -----                                            <---------------AGL15                       ----------->GT1                               ---------->DOF2  --------->MYB52(1)                 <---------CCA1(1)   <----------DOF2      ---------->DOF2    <---------ZAT18                         <---------RVE1(1)   <---------DAG2       --------->MYB52(1) --------->ZAT18                        <---------GLK1(2) --->ID1          ----------->GT1          ----------------->AGL1                 <---------ARR11(3) ---RAV1(1)      ----------->GT1   ----------->GT1                                --------->ARR11(3)<   ctctcctttttgtctcgagggggaaataaaggcaaaagggttaagcccactaaaggaaactaagcatggtattagttatatgaagattttttgtaaattg  7940700           --------->AHL20(2)           <---------AHL20(2)          --------->AHL20(2) --------->DREB2C(2)      --------->AHL20(2)     --------->DEAR3(1)                                            <---------YAB1      --------->AHL20(1)     --------->ANAC46                                            --------->CCA1(2)      <---------AHL20(1)    <---------LBD16             <---------ARR14(2)              --------->ARR11(3)      <---------ARR11(3)   --------->MYB52(1)           --------->ARR14(2)      ---------->DOF2------ -------WOX13(1)         ----------->HVH21         ----------->GT1    --------->AHL20(2)--------->ARR11(1) ---->ATHB12 <---------GLK1(2)         <------ZmHOX2a(1)------->TEIL  <---------AHL20(2)<---------ARR11(3) -----------GT1       <---------ARR11(3)        <------ZmHOX2a(1)   --------->YAB1  ---------->DOF2   atttacaaaatattaaattctcaagaactcaccggcatggaggaagaataggagagtgaatcttcaacaaaaataaatatacaaaagaaagatatgagag  7940800                                     --------->AHL20(2)                                     <---------AHL20(2)                              <---------ANAC46                              <---------ANAC58                                      <----------------                              ----------->GT1--------->DAG2                      <---------AHL20(2)                              <---------ANAC58                              <---------AHL20(2)                           --------->ALFIN1 ---------->DOF2                 --------->AHL20(2)                       ---------->DOF2   <---------AHL20(2)    <----------DOF2  <---------AHL20(1)                 <------ZmHOX2a(2)  <---------AHL20(2)       <---------HSFC1(2) <---------AHL20(2)               <------ZmHOX2a(1)    --------->AHL20(2)       --------->HSFC1(2) --------->AHL20(2) ----->GT1  <---------------------WRI1   --------->AHL20(2) --------->GLK1(2)<---------AHL20(2)   tgaaaaccgaaatatgaggatcaaacaaagtggtgtgatttatttaaaaagggaattgagagaagctttgtgaggctattaatttttttttttttttttt  7940900                      --------->AHL20(2)             >>>>>>>>>>WRKY43             >>>>>>>>>>WRKY38             >>>>>>>>>>WRKY11             >>>>>>>>>>WRKY6             >>>>>>>>>>WRKY26             <---------WRKY18(1)                                                                   <-            --------->WRKY38(1)        <---------ARR11(3)                                      <-----            --------->WRKY45     --------->LBD16      ------------------------>ANAC81          ------            --------->WRKY12    ----------->RAV1(1) ----------->GT1                          --------          --------->At4g35610   --------->ANAC46  ---------->DOF2                           ---------          <---------At4g35610  <---------LBD16 <----------ID1                  ------->TEIL <--------     ----------->HVH21<---------AHL20(2)<------ZmHOX2a(2)         ---------->DOF2  <-----------HVH21 --------ANAC81     --------->YAB1    --------->GLK1(1)>>>>>>>>>>GT-3b ---------->DOF2      <--------   tgatgctctcacagttgaccaaaaataaatgctcccgcagagatcaaaaacgaaaagaaaaataaaactaaagaaaagatgtatttgtcaccaatatata  7941000                                                                            <--------ATHB1                                                                            <---------ICU4                                                                            --------->ATHB12                                                                            -------->HAHB4                                                                            --------->YAB1                                    --------->YAB1                          --------->ATHB51                                 ----------->GT1                            <--------HAHB4                            <---------ZAT14                                --------->AHL20(2)                            --------->ZAT14                                <---------YAB1 --------AHL20(2)           <---------ZAT18                              --------->YAB1 ----AHL20(2)           --------->DAG2    --------->YAB1                <---------YAB1 --->AHL20(2)          ---------->DOF2    <---------ICU4      <-----------GT1                    ---- ->AHL20(2)         --------->CCA1(2)  <---------ICU4         --------->ARR11(3)  <---------TOE2(3) >AHL20(1)         <---------ARR11(3)  --------->YAB1    <---------AHL20(2)<---------ATHB51    ------ -ARR11(3)         --------->ARR11(3) --------->ICU4     --------->AHL20(2)--------->ICU4 --------->AHL20(2) -AHL20(1)  ---------->DOF2 --------->ZAT18        --------->YAB1     --------->YAB1    <---------TOE2(3)   tataaaaaacactgaaaaggagatataaagtgcacttgtaataatcatcccaattgtatttaaataacttgttcataataattagaggttaagaaaataa  7941100  Previous    Next  AGI:  At1g22490.1    Description:  basic helix-loop-helix (bHLH) family protein. similar to basic helix-loop-helix (bHLH) family protein (bHLH096) [Arabidopsis thaliana] (TAIR:AT1G72210.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO61663.1); contains InterPro domain Basic helix-loop-helix dimerisation region bHLH; (InterPro:IPR001092); contains InterPro domain Helix-loop-helix DNA-binding; (InterPro:IPR011598) Range:  from: 7938240    to: 7940581    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version