Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                              --------->ARR14(1)                                      -                                           --------->ARR11(1)                                      <-                               --------->AHL20(2)                                           ---------   ---------->DOF2             <---------AHL20(2)                                           <-------- <------ZmHOX2a(1)             <---------YAB1<-------TEIL                      <---------ZAT6    <--- --------TOE2(3)            <----------DOF2<---------GLK1(2)                 <---------ANAC46-------- ---------AGL1      --------->YAB1       ----------->ARR10              <------MYB83       --------->AHL20(2) ---------AG    --------->AHL20(2)   <---------TOE2(3)                  <------MYB46(1)  --------->AHL20(2) --GT1          <---------AHL20(2)   <---------YAB1               <---------AHL20(2)   --------->AHL20(2)   ttaggaaaagtctcataaatatttataaaactttttattaacatagattcgtttttagttttgcatatttcatttggttttgtgttaaaaaaaatatata  7753900              --------->ANAC58         ====================================HOX2a_HOX2a         <------ZmHOX2a(2)                  <---------ANAC55(2)       <------ZmHOX2a(1)                    <---------ANAC55(1)     --------->MYB59                        <---------ANAC58 <---------ICU4                             <---------ANAC46 -------->ICU4--------->ANAC58              <---------ANAC58 --------AHL20(2)                          <-------TEIL >AHL20(1)    --------->AtLEC2          <---------GLK1(1)         --------->AHL20(2)                < -AHL20(1)   <-------MYC3               --------->GLK1(1)         <---------AHL20(2)       <---------YAB1 ------AHL20(2)                         --------->At4g35610      <---------AHL20(2)     <---------YAB1 ->AHL20(2)  ------->MYC3             <------ZmHOX2a(1)      <---------AHL20(2)      <----------DOF2-   taaaaattaggatcacatgcaaattgtattcactagagaaggagatgcgtgtgattcaactagtttatttatttgacaaatagttttcttttgattatac  7754000                                                                                  --------->AHL20(2)                                                                                  <---------AHL20(2)                                                                                 <---------AHL20(2)                                                                              <---------AHL20(2)                                                                              --------->AHL20(2)                                                                             <---------AHL20(1)                                                                             <---------AHL20(2)                                                                             --------->AHL20(1)                                                                             --------->AHL20(2)                                                                          <---------AHL20(2)                                                                          --------->AHL20(2)                                                                         --------->AHL20(2)                                                                      <--------HAHB4                                                                      <---------ICU4                                    <---------ARR11(3)                --------->ATHB51                                    --------->AHL20(1)                -------->ATHB1                -                                    --------->ARR11(3)                --------->YAB1                <                                    <---------AHL20(1)                --------->AHL20(2)            -                                  ------->TEIL                       <---------ATHB12               <                             --------->At4g35610                     <---------ATHB51 --------->AHL20(2)                             <---------At4g35610         ------->TEIL--------->ICU4  <---------AHL20(2) ---------AHL20(2)         <-----------RAV1(2)        --------->ANAC55(2)<---------AHL20(2)      ---- -------->AHL20(2)  <---------MYB52(1) <---------AHL20(2)<-----------GT1<---------YAB1<---------AHL20(2)   atttaaattagatgtttatttcgttatgttcagatgaatatttttttgaaattttcatgtaactattttcaattattaatttatttatttattttcaaaa  7754100                 <---------WOX13(1)              <---------YAB1        <XXXXXXXXXXXXXXXXXXXXMIR420        <---------YAB1                       ----------->GT1     <---------AHL20(2)                    >>>>>>>>>ARR1                                   <-------GAMYB     --------->AHL20(2)                    >>>>>>>>>ARR2                                <---------LBD16     <---------AHL20(1)         --------->ANAC46                                    <---------ATERF1(1)  --------->AHL20(2)          <---------AtLEC2                                     --------->ARR14(2)  <---------AHL20(1)    <------MYB83  --------->AHL20(1)                        --------->DEAR3(1)  --------->AHL20(1)    <------MYB46(1)   --------->ATHB12                     <---------At4g35610 -------->AHL20(1)     <---------AtMYB61 <---------YAB1       --------->YAB1   <---------LBD16 ---------AHL20(1)     --------->MYB59<---------AHL20(1)     <---------ATHB12 --------->MYB52(1) -------->ARR11(3) <------MYB83 --------->ANAC58            ------>MYB83  --------->ANAC46--------->LBD16 ---------ARR11(3) <------MYB46(1)    <---------AHL20(2)    ------>MYB46(1)<-----------HVH21 ----->AHL20(2)--------->ATHB12 --------->ANAC58           --------->WOX13(1)<-----------GT1    -----   aaaatattttatttttgtgattggtttggtttgcaagtaatatatgattgtaaaactaaaccaatcaaaccgatgtaagtcaccggctactccggttgaa  7754200               --------->GLK1(2)     --------->ANAC55(2)           <---------HSFB2a(2)       <---------ANAC55(2)           <---------HSFC1(1)  <------NtERF2           --------->HSFC1(1) <-----------TGA1    ----------->HVH21       <---------ANAC46       <---------RAP2.6(3)<---------MYB52(1)                                ==    <---------RAP2.6(2)      --------->RAP2.6(2)--------->LBD16                                    <-   <---------LBD16      ---------->DOF2      <---------At4g35610               <-----------GT1 <----- ----->DOF2--------->HSFB2a(2)<-----------HVH21--------->ATERF1(2)        <---------MYB52(1) <-------   aagtatgcggcttctagaatcagtctcaaagccgtcatcacctattcagccggtaacccttccaaattccattttcgttatttccctcatttgtttttct  7754300                                                                                                 xxxx                                                                                                -----                                                                                                <----                                    --------->TGA1a                                          <-------                                    <---------O2     --------->ANAC58                       <--------    ------------>CBF                --------->O2     --------->ANAC58                    <---------TOE2(3)    --------->LBD16                 ==========================bZIP_DOF                   <---------TOE1(3) =============================================bZIP_DOF                              <----------DOF2 ---------DOF2                      <---------TGA1a---------->DOF2               --------->ARR11(3) ------GT1                   <---------ANAC58   --------->ANAC58                 <---------ARR11(3) ----GT1  *TSS               <---------ANAC58   --------->ANAC58  ------>ZmHOX2a(2)------>ZmHOX2a(2)   cctttccccaattctcttcttctcatccatagcttccgacgagagagaagaagcaaagcaaaattcgatcgctctgggtttttgatcttttagggtttct  7754400       <---------AtLEC2                    <---------TOE2(3)  --------->ARR14(2)                      --------->DAG2                           ------>ZmHOX2a(1)  <---------ARR14(2)  <----------DOF2    ---------->DOF2                          <XXXXXXXXXXXXXXXXXX xxxxxxxxxxxxxxxx>smallRNA(si3)       --------->YAB1                          --------->At4g35610 ---->HSFB2a(2)       <---------DAG2 <---------YAB1      <-------GAMYB        <---------At4g35610 -----HSFB2a(2) --------->TOE1(3)<---------ARR11(3)  <----------DOF2          <---------ZAT2 --ARR14(2)     --------->TOE2(3)--------->ARR11(3)<---------HSFC1(2)         --------->ZAT2 -GLK1(1)    <---------GLK1(1)  --------->YAB1     --------->HSFC1(2)  <-----------RAV1(1)       ----   ggcaaatttggatggaaacctcaactttatccaaagataatcataaaggaagaagctttcgttgttgtttccattgttgcagctccttcaaaaactcttg  7754500                     <---------GLK1(1)              <---------ZAT2                                                   <---------TOE2(3)              --------->ZAT2                                               --------->ARR11(3)        <-----------HVH21                                                  <---------GLK1(2)       <----------DOF2                                                     <---------ARR11(3)      <---------ANAC58                                                  --------->HSFB2a(2)      <---------ANAC58                                          <---------ANAC58 XXMIR2937    --------->At4g35610                               <---------ANAC58        ------->TEIL- ------>ID1   <---------At4g35610       ---------->ID1 <---------TOE2(3)<---------HSFB2a(2)  --------   tctctattgctttcacagctaagaattctcgattccatcgttgtcgttttcgattttgacgaaattgggttcttctagattttggttatggaccgtatag  7754600                   <---------GLK1(2)                   --------->ARR14(2)             <----------DOF2      --------->ANAC58        =================HOX2a_HOX2a       ==================HOX2a_HOX2a       <---------GLK1(1)          --------->ANAC46       <------ZmHOX2a(2)          --------->ANAC58       --------->GLK1(1)        <---------ALFIN1      --------->AGP1         --------->PCF2      <---------AGP1--------->ARR14(1)      --------->ARR11(3)   --------->At4g35610      <---------ARR11(3)   <---------At4g35610      <---------ARR14(2)   <---------ZAT2                 <---------HSFB2a(2)          --------->ANAC58      --------->ARR14(2)   --------->ZAT2                 --------->HSFC1(1)           --------->ANAC46     <---------CCA1(2)--------->MYB59           --------->TOE2(3)         --------->At4g35610     XXX     --------->At4g35610<---------MYB52(1)     --------->ANAC46      <---------ATHB12  --------->ANAC58   --------->YAB1  --------->ARR11(1)        <---------ALFIN1<---------GLK1(2)       --------->YAB1  <---------ATHB12 <---------ARR14(2)     --------->ZAT6  --------->HSFB2a(2)       <---------ATHB12 -------->WOX13(1)<------ZmHOX2a(1)  <---------DAG2       ------>ZmHOX2a(1)       --------->WOX13(1) -->DOF2------>ZmHOX2a(2)<--------P  <----------DOF2   ------>ZmHOX2a(1)  <---------At4g35610   <----   ctcaatcagatctctctttaggattcggtagctcccacgctttacctctacctcatcctcctagaatcccaatcgctgatgactcaatcacgcttcagat  7754700                                                                                ------>ZmHOX2a(2)                                                                                =====================                                                                                =====================                                                                               ======================                                                                               <------ZmHOX2a(2)                                                                               ======================                                                                              <---------ARR14(2)                                                                 <-------TEIL --------->ARR14(2)                                                                --------->CCA1(2)                                                                --------->ARR14(1)                                                                --------->GLK1(2)                                                               --------->ARR11(1) ------>ZmHOX2a(1)                                                    <---------ANAC55(2)   <---------At4g35610          <---------ANAC58                          --------->ANAC55(2)   <---------LBD16          <---------ANAC58                          <---------ANAC46    <-----------GT1     <---------ZAT2                                 <---------ANAC58   ----------->HVH21     --------->At4g35610                  ------>ZmHOX2a(1)  ----------->ARR10<---------GLK1(2)     --------->ZAT2                 ------>ZmHOX2a(1)    --------->At4g35610 <---------ARR14(1)     <---------At4g35610          ----------->RAV1(2)    <---------At4g35610--------->LBD16 XXXXXXXXXXXXXXXXX>MIR773B ------>ZmHOX2a(1)        <---------ANAC58  <-----------HVH21             < -----WOX13(1) ------>ZmHOX2a(1) ------>NtERF2   <---------MYB52(1)  --------->bZIP60(1)     <-------   tgattccagcttccgtccttcgtctaatcctatgcctcctgttcctcttcagttacttgagcagagattcgatgtcaccggatcctgtagccgagttgtt  7754800  Previous    Next  AGI:  At1g22020.1    Description:  SHM6 (serine hydroxymethyltransferase 6); glycine hydroxymethyltransferase. similar to SHM7 (serine hydroxymethyltransferase 7), glycine hydroxymethyltransferase [Arabidopsis thaliana] (TAIR:AT1G36370.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO61783.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO24648.1); similar to serine hydroxymethyltransferase [Populus tremuloides] (GB:ABO61384.1); contains InterPro domain Pyridoxal phosphate-dependent transferase, major region (InterPro:IPR015424); contains InterPro domain Pyridoxal phosphate-dependent transferase, major region, subdomain 1; (InterPro:IPR015421); conta Range:  from: 7754310    to: 7757372    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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