Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                 <-----                                                                                         <---------LBD16                                                    ---------->DOF2                      ------->TEIL          ----------->GT1                  <---------YAB1                             --------->AtLEC2        ---------->DOF2               <---------AHL20(2)                       ------>ZmHOX2a(1)    --------->REM1(1)                --------->AHL20(2)                        --------->LBD16 <----- <---------MYB52(1)                  <---------AHL20(2)       --------->ARR14(2)   <-------TEIL------ --------->GT1                 ----------->GT1  ---------->DOF2               <---------ANAC46 ------   accgttacaacaaagaaaaaaacgtttttagaatcgaaattttttttgataaaagaaagaaaacgatactcaaaaacattcctggtacatgcacgggtat  7729200          --------->TOE1(2)    --------->YAB1   <---------ATHB12                        --------->AtLEC2                              <---------ANAC55(2) ----KAN4(2)                          --------->ANAC58                                   --------->ANAC55(2) ----ARR14(2)                         --------->ANAC46                       --------->YAB1 --->ARR14(2)                         --------->ANAC58         <----------DOF2 <---------YAB1 ---->TaMYB80                       --------->AtMYB61 ----------->GT1       --------->ICU4   attcaatgaacacatacgagagatttgtttaactaataccacaccatggaaatatttggataaaactttgactcagccatgatgaaacaatacatatcaa  7729300                                                                                 ---------->DOF2                  <---------AHL20(2)                                      <---------HSFC1(1)                 --------->AHL20(2)                                       <---------HSFB2a(2)             ------->TEIL                                                 --------->HSFB2a(2)         ------->TEIL                                           --------->AHL20(2)    <---------ANAC58              ------>NtERF2                 <---------AHL20(2)               <---    <---------ANAC58             --------->ANAC46         --------->TOE2(3)  ---------->DOF2   <-----    <---------ANAC46            --------->LBD16 --------->TOE2(3)         --------->HSFC1(1)  -------    <---------AtLEC2          <---------LBD16   --------->TOE1(3)   <---------ICU4            <------   actcttgcatgtatgtatataaaatcgtcttctccgggccattcccaaaaccttcacaaatctaaattaaaaatttctagaaagaaagcatttagttcgt  7729400                                                                                     --------->AHL20(2)                                                                               ----------->GT1                       --------->DAG2                                       <-----------GT1                      ---------->DOF2                                 --------->ANAC58 ------MYB46(3)    --------->YAB1                                  <------NtERF2    --------->YAB1 --GAMYB          <-------TEIL---------->ARF1              <-------TEIL --------->AHL20(2) -->MYB52(2)  <---------AHL20(2)                    <---------AHL20(2)--------->ANAC58 ---MYB46(3) --------->AHL20(2)      <---------DAG2 --------->AHL20(2)----------->GT1<---------AHL20(2)   tgttgcaaagtctcataaaattcataaagcatgtctccaatttttcatgagcatataaatatacatggaggcaagtatatactgtataaaaatagccact  7729500                                                  ------->MYC3                                     --                                                  ------->MYC2                                     <-                                                  <-------MYC2                                    <--                                                  <-------MYC3                                    <--                                                 --------->ANAC46       <----------DOF2           ---                                               <---------ALFIN1        <------------------------ANAC81                                           --------->GLK1(1)         <---------RAP2.6(3)          ---                         ----------->HVH21 <---------GLK1(1)         ------>NtERF2               <---                       --------->At4g35610 <---------At4g35610      <---------ANAC46          -------                       <---------At4g35610 <---------ZAT2           <---------ANAC58     <----------DOF2                       <---------ZAT2      --------->ZAT2           <---------ANAC58  ---------->ID1                     <--------P            --------->At4g35610    ------>NtERF2    --------------->AtSPL8   tagattaccagagatggattttggtagctgatagtgagagaagggagctccacgttccattgtttctctgccgtctttttttttttttgttctttataaa  7729600         <---------WOX13(1)      *TSS --------->ATHB12  --------->ATHB51  --------->ATHB12  <---------AHL20(2)                                                                        <--------  --------->AHL20(2)                                                                  <-----------ARR10  <---------ICU4                                                                      <---------ARR14(2) <---------YAB1          ---------->DOF2          <-----------TBP                     --------->ARR14(2) --------->ICU4       --------->AtLEC2         <---------MYB46(3)                    <-------GAMYB ------->YAB1         --------->ANAC58      <---------ANAC58                        <---------MYB46(3) --------ICU4         --------->ANAC58      <---------ANAC58                        <---------DEAR3(2) -------ATHB51      <---------ANAC46       --------->ATHB12                        <---------DEAR3(1) -------AHL20(2)    <---------ANAC58    <-------GAMYB                             --------->ATERF1(1) ------>ICU4        <---------ANAC58   <---------MYB46(3)                         <------NtERF2 ------>AHL20(2)    <---------AtLEC2  <---------YAB1                            <---------DEAR3(1) ------AHL20(1)<-----------RAV1(1) <-------TEIL----------->GT1             ---------->DOF2  <-------- -->AHL20(2)   <---------MYB46(3) <--------P<---------ANAC46<---------At4g35610 --------->ALFIN1   ataattatttgagtgatttgttgcatgcaaagagaggttgatggttgagtggttttatagagagatgatacaaatggcaaaggaggcggttcttacgagg  7729700                                                                                                  ---       <----------DOF2                                                                            <--  --------->ARR11(3)     --------->ATHB12                          <---------MYB46(3)           -----  <---------ARR11(3)  ---------->ID1                             <---------ANAC58               <---- <---------CCA1(2)<---------ANAC58                               <---------ANAC58       ---------->DOF2 -TOE2(1)         <---------ANAC58         --------->WRKY18(1)  <---------MYB46(3)  <-----------GT1 -TOE1(1)         <---------ANAC46<-----------RAV1(1)       --------->ATHB12 <-----------GT1---------   tctatatctctttcccattggcttgtctcattggctatgtggccagtcaaactgctcttctctcattggttgttttttttcacaaattaccaaagtaatt  7729800                                                 <xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) <-----------RAV1(1)       ---------->DOF2                         <---------YAB1                     <---------AHL20(2)    --------->YAB1                            --------->AHL20(2)                 <---------AHL20(2) -------->GT1               ---------->DOF2 <---------RVE1(1)                --------->AHL20(2) -------ANAC55(2)       ---------->DOF2    <---------GLK1(2)                <---------AHL20(2) ---->AHL20(2)      ---------->DOF2        <---------ARR11(3)               --------->AHL20(2)<------ -----AHL20(2)    <---------TOE2(3)        --------->ARR11(3)           --------->AHL20(2)   <------- >AHL20(2)        <---------YAB1 --------->CCA1(2)                <----------DOF2--------->AHL20(2)   aagtaaaaataaagactattaagaaagaaagaaagataagaagaagatttttatacatatgaggctctctttgtttatataaattaaatgttgtttaaca  7729900                                                             <---------MYB52(1)                                                           ----------->GT1                                                           <---------ANAC46                                                           --------->bZIP60(1)                                                           <---------bZIP60(1)                                                        ----------->HVH21                                                      --------->TGA1a                                                      <---------ANAC55(2)                                                      <---------TGA1a                                                      --------->O2                            <------                                                      <---------O2                            -------                                                      <---------ANAC46                    --------->AHL20(2)                                                      --------->bZIP60(1)                 <---------AHL20(2)                                                      <---------ANAC58                   --------->AHL20(2)                                                      <---------ANAC58                   <---------AHL20(2)                                                      <---------bZIP60(2)                --------->AHL20(1)                                                      --------->ANAC55(2)           --------->AHL20(2)                                                <xxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)  <---------AHL20(2)                                          <xxxxxxxxxxxxxxxxsmallRNA(i)             --------->YAB1                                       --------->At4g35610 --------->ANAC55(2)    <---------YAB1                   --------->DAG2     xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)     <---------AHL20(1)      <---------AHL20(2)             --------->MYB46(3) ----------->TGA1       <---------AHL20(2)      --------->AHL20(2)            --------->SPL7<---------WOX13(1)           --------->AHL20(1)     --------->AHL20(2)            --------->MYB52(1) <---------bZIP60(1)  <---------AHL20(2) <------ ---TOE2(3)       ---------->DOF2 <---------SPL7--------->ATHB12<---------YAB1 --------->AHL20(2) ----GT1          ==============================================bZIP_DOF  <---------AHL20(1)  -------   ttttctatttatttagtcaataaagtattcgattatcgaacggctgagaaagattgacgtgacgttattttagtcatatattttattaaaatttaataaa  7730000                                                                     <---------------AGL15                                                                     --------------->AGL15                                                                    <-----------------AG                                                                    <-----------------AGL1                                                                    ----------------->AGL2                                                                    <-----------------AGL2                                                                    ----------------->AGL3                                                                    ----------------->AG                                                                    <-----------------AGL3                                                            --------->ARR14(1)       --------->ZAT6                                       --------->GLK1(2)       <-----------GT1                                     --------->ARR11(3) <---------TOE2(3)                     ----------->GT1     <---------ARR14(2) ---AHL20(2)                  --------->AHL20(2)           --------->ARR14(2) -->AHL20(2)                  <---------AHL20(2)           <---------ARR11(3) ---AHL20(1)            --------->TOE2(3)                  <---------GLK1(2) --------->At5g28300 -->AHL20(1)     <----------DOF2<---------TOE2(3)        ----------->ARR10  ----------->GT1       ---   atataggtttcactaaattctttgtttcttaattaatgaaattgaaaattagttttaaaaagattctcttacttaaaatggtaaattttggtatatttga  7730100  Previous    Next  AGI:  At1g21970.1    Description:  LEC1 (LEAFY COTYLEDON 1); transcription factor. Identical to Nuclear transcription factor Y subunit B-9 (NFYB9) [Arabidopsis Thaliana] (GB:Q9SFD8;GB:O81130); similar to CCAAT-box binding transcription factor family protein / leafy cotyledon 1-related (L1L) [Arabidopsis thaliana] (TAIR:AT5G47670.2); similar to CCAAT-box binding transcription factor family protein / leafy cotyledon 1-related (L1L) [Arabidopsis thaliana] (TAIR:AT5G47670.1); similar to leafy cotyledon1-like protein [Theobroma cacao] (GB:CAM35799.1); contains InterPro domain Transcription factor, NFYB/HAP3, conserved site; (InterPro:IPR003956); contains InterPro domain Transcript Range:  from: 7727566    to: 7729606    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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