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Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
 
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                                                                           ------->GAMYB
                                                                         --------->At4g35610
                                                                        ----------->RAV1(1)
                                                                       <---------WRKY45
                                                                       --------->ETT(2)
                                                                       <---------WRKY12
                                                               --------->AHL20(2)
                                                               <---------AHL20(2)                  <
                                                              <---------AHL20(2)                   -
                               <---------ICU4                 --------->AHL20(2)                 ---
------ZAT18                   <---------ATHB12                <---------AHL20(1)              <-----
----->ZAT14                 --------->WOX13(1)          <-----------GT1<---------WRKY38(1)    ------
----DOF2                   --------->AHL20(2)        ----------->GT1  --------->WRKY18(1)    ------>MYB46(1)
--GT1                      <---------AHL20(2)   --------->MYB52(1)<---------WOX13(1)         ------>MYB83
 
gcactaacaaaacaaaaaaaaaaaaaacaataaatcaatactaccaaaaaaaaaccgagtaacaatttaattggtcaacagaaattgatcaaaaccaaat  7508600
      --------->GLK1(1)
     <---------ARR14(2)
     --------->ARR14(2)
  --------->ANAC46
  <---------ANAC55(2)
  --------->ANAC55(2)
  --------->ANAC55(1)
  --------->ANAC58
  --------->ANAC58                                                            --------->ZAT6
 <---------LBD16                                                         --------->HSFC1(1)
---------ARR14(2)                                                        <---------HSFC1(1)
-------->ARR14(2)                             --------->CCA1(2)          <---------HSFB2a(2)
-------->HVH21 --------->AHL20(2)            --------->ARR11(3)          --------->HSFB2a(2)
----ARR14(2)   <---------AHL20(2)            <---------ARR11(3)  <---------MYB52(1) <---------ZAT6
--->ARR14(2)   --------->YAB1   <----------DOF2 <---------AHL20(2)     ----------->RAV1(2)
 
cggacacggaactgctaattatatacagtagtattcttttccaagtgagatataaatcactaatttcagttaccttctggaacagtagagctagagaaaa  7508700
                                               --------->CCA1(2)
                                              --------->ARR11(3)
                                  --------->ANAC46
                                 --------->TOE1(3)
                                 --------->TOE2(3)
                               <---------At5g28300                         <---------GLK1(2)
                              <-----------GT1 <---------AHL20(1)       --------->YAB1
                       --------->ANAC58       <---------ARR11(3)      <<<<<<<<<ARR2  <---------CCA1(2)
                       --------->ANAC46       --------->AHL20(1)      <---------ATHB12
      <----------DOF2  --------->ANAC58     ----------->ARR10       --------->WOX13(1)      <-------
 
attcaaagacttttacaaagtcttgtaagcaatttaccctaaacaataagatattggtattcttcagaaaacaatcaaaattctcttcatatcatttttt  7508800
                                                                              --------->O2
                                                                              <---------TGA1a
                                                                              <---------O2
                                                                              --------->TGA1a
                                                                              =================bZIP_DOF
                                                                              =================bZIP_DOF
                                                                          <---------ALFIN1
                                                                         --------->ANAC46
                                                                       --------->ZAT6
                                                                     ------>MYB83                ---
                                                                     ------>MYB46(1)    ---------->DOF2
                                                           --------->ANAC58   ======================
        <<<<<<<<<TBF1                                      --------->ANAC58   ======================
 --------------->AtSPL8       <---------AHL20(2)           ----------->GT1--------->AtMYB61   <-----
--AHL20(2)             --------->YAB1          <---------AHL20(2)  <---------MYB59  <----------DOF2
 
tttgttcgttcttcttcagaaaacaatcttcattttttttgtttttgaattttttttggttcaagtaaaacctaacaccacacgagtctttaaaagtatg  7508900
       ----------->GT1
   ---------->DOF2
--------------->AGL15
<---------------AGL15
<----------DOF2                     --------->ANAC58                                  <-----------GT1
---->TEIL                       --------->AtMYB61                      --------->ANAC58 <---------ICU4
===========bZIP_DOF       ---------->DOF2                              --------->ANAC58<---------YAB1
===========bZIP_DOF--------->TOE2(3)--------->ANAC46     *TSS--------->YAB1---------->DOF2
----YAB1           <----------DOF2  --------->ANAC58 ----------->GT1 ---------->DOF2 <-----------GT1
 
aatctttaaagagtaaacacatctttaaacaaagaccacaagacacagaataaaaccagaaaaatcagaacccaaagccaaagcgtttttatcatttctg  7509000
                                     <---------MYB52(1)            <-----------GT1
                                    <----------DOF2            <----------DOF2
                                   --------->TOE2(3)       <---------TOE2(3)
                             --------->WRKY18(1)       <----------DOF2                --------->GLK1(1)
       --------->REM1(2)    <-----------HVH21         --------->TOE2(3) <---------TOE1(2)
    <---------ANAC46    ---------->DOF2    <----------DOF2 <---------TOE1(3)          <---------GLK1(1)
 
tcttcttctgtgtaaacagtaagaccccaaaggtcaaacctttaggctttgtttcttcctttaaggcttttttccgacgtttatatcagatttcttcttg  7509100
                  --------->TOE2(3)
                  ------->GAMYB
                 --------->MYB46(3)           ------>ZmHOX2a(1)
      --------->ATHB12                  <---------DAG2
    <---------------AGL15               <----------DOF2                          <---------DAG2
    --------------->AGL15           ------>MYB83                             --------->MYB46(3)    <
   <-----------------AGL2           ------>MYB46(1)             <---------WOX13(1)                --
   <-----------------AG           --------->MYB46(3)      --------->LBD16 --------->MYB46(3)------>ZmHOX2a(1)
   <-----------------AGL1         --------->DEAR3(1)      ------>ZmHOX2a(1) -------->P    ----------
 <---------ARR11(3)              --------->DEAR3(2)     ----------->RAV1(2)--------->WOX13(1)     <-
 
tcaatttcttcatttggacaacctccataatccaagaccgacccttttcctctaatctctcctggtaattgacttcatcaaccaatttttgtttcctggt  7509200
     <----------DOF2                                                          ----------->GT1
---------MYB52(1)                               <----------DOF2             --------->At4g35610
---->ZmHOX2a(1)          --------->ANAC55(2)   <---------ANAC58     ------>ZmHOX2a(1)
->RAV1(2)             <---------GLK1(2)        <---------ANAC58   <---------ICU4    <-----------GT1
---------DOF2    <----------DOF2     <-----------RAV1(1)    <----------DOF2 <---------At4g35610
 
cctttagtcttttctctaagctttagatacttgtttgattatgttgttttgctttactctggactttaatccttatgtaagctgtttaaaccagtcaatt  7509300
                    <---------ZAT18
                    --------->ZAT18
                    --------->ZAT14
                    <---------ZAT14
              ------>ZmHOX2a(2)
             <------ZmHOX2a(2)                                                                    <-
            <---------ARR11(3)                                            <---------TOE2(3)       <-
            --------->ARR11(3)                                      --------------->AGL15        ---
            --------->AGP1                                   <---------MYB46(3)                  ---
            <---------AGP1 <---------WOX13(1)            <---------AHL20(2)                   ------
    <---------TOE2(3)   <---------YAB1                   --------->ATHB12 <---------TOE1(3) --------
 
tgctattaagaaatagatcttagtgctctgattgttctgaattgggactatggaagagatttattggttaactggttatggtattgagaattgcatagat  7509400
     <-----------HVH21
  <------MYB46(1)
  <------MYB83
 --------->MYB59
 --------->MYB46(2)
 --------->MYB111(1)
 --------->MYB111(2)
<--------P
<---------MYB55(1)                                   <---------AHL20(2)
-----MYB83                                          <---------AHL20(2)                         <----
-----MYB46(1)                                 <---------ANAC55(2)                             <-----
------>MYB111(1)                   <------MYB83     <---------AHL20(1)                        <-----
------>MYB59           <-----------GT1       <-------TEIL  <-----------GT1                <---------
--->ARR11(1)<------ZmHOX2a(1)      <------MYB46(1)  --------->AHL20(2)             --------->YAB1
--->ARR10--------->At4g35610  --------->ATHB12--------->ANAC55(2)  <---------YAB1 <---------YAB1
 
ttggtaggtatcagaggaagagtttttttcaattgatttggtgagagttacataattttttttttcaattctcaatggatttttgatgatagtctttgct  7509500
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AGI:  At1g21450.1   
Description:  SCL1 (SCARECROW-LIKE 1); transcription factor. similar to PAT1 (PHYTOCHROME A SIGNAL TRANSDUCTION 1), transcription factor [Arabidopsis thaliana] (TAIR:AT5G48150.1); similar to PAT1 (PHYTOCHROME A SIGNAL TRANSDUCTION 1), transcription factor [Arabidopsis thaliana] (TAIR:AT5G48150.2); similar to unnamed protein product [Vitis vinifera] (GB:CAO60903.1); contains InterPro domain GRAS transcription factor (InterPro:IPR005202)
Range:  from: 7508958    to: 7511790    Orientation: Forward
Links:  TAIR  MIPS 
 
 
Please cite the corresponding publications when using AthaMap.

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