Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                            --------->ANAC55(2)                                                                          <---------ANAC55(2)                                                                         --------------->AtSPL8                        --------->ANAC58            --------->ANAC58 -------->ATHB1                     --------->WRKY18(1)         --------->WRKY18(1) <---------ICU4              <---------AHL20(2)          <---------AHL20(2)         --------->ATHB12           <----          --------->YAB1--------->ANAC46 --------->YAB1              <--------HAHB4           <------        ------>MYB83<-----------HVH21 --------->YAB1--------->ANAC58 --------->YAB1     <---------ICU4        ------>MYB46(1) --------->ANAC58 --------->AHL20(2)         <---------YAB1     <---------YAB1       ----------->RAV1(1)          ------>MYB46(1) --------->ANAC46<---------ATHB12   --------->ICU4 ---ANAC55(2)--------->AHL20(2)     ------>MYB83<-----------HVH21   --------->ICU4   --------->YAB1 -->ANAC55(2)--------->YAB1        ----------->RAV1(1)            --------->WOX13(1)<---------YAB1   atttgataccaacaataaaaatggtcaagccatataccaacaataaaaatggtcaagccatacactgacaatcattaagtactactatcataattttcgt  7238400                  ---------->DOF2                                                               -----                 --------->YAB1                               --------->DAG2     <---------AHL20(2)                <---------ATHB12            --------->AtLEC2 ---------->DOF2    <---------AHL20(2)                <<<<<<<<<ARR2           <---------At5g28300--------->AHL20(2)   --------->AHL20(2)  <---------AHL20(2)                   --------->YAB1      --------->YAB1     --------->TOE2(3) ----- -----MYB52(1)--------->WOX13(1) --------->ANAC58         <---------ATHB12  <---------AHL20(2)  ----- ---ANAC46----------->HVH21      --------->ANAC58--------->WRKY18(1)<---------ANAC46        <--------   ttatttcattcactgacaatcaaagttattttcacaaacaattaccatgcagtcaaaccaataaaaagttgagtttatttcattaattttctaaataatc  7238500        <-----------GT1                                                                 <---------WOX13(1)     --------->YAB1                                                                   --------->ATHB12    <---------AHL20(2)                                                                <--------ATHB1    <---------YAB1                                                                    <---------ICU4   --------->AHL20(1)                                                                 -------->HAHB4   <---------AHL20(1)             <---------AHL20(2)                                  --------->ATHB51   --------->AHL20(2)             --------->AHL20(1)                                 <---------ATHB51  --------->YAB1             <---------AHL20(2)                ---------->DOF2       --------->AHL20(2) ---->YAB1                   --------->AHL20(2)            <----------ID1            <---------AHL20(2) ---->TOE1(3)               --------->AHL20(2)           ----------->GT1           --------->YAB1 ---->TOE2(3)         --------->YAB1                   >>>>>>>>>ARR2           --------->ANAC46 -AHL20(2)       <---------YAB1   --------->AHL20(2)   >>>>>>>>>ARR1   --------->AHL20(2)   <<<<<<<<<MYB2   ttaaatataataactggccatgaatgaaaattaaaattttttgagtaatctacataagattgtgacaaagacattaaatacacataaataattggttttc  7238600                                                        <---------YAB1                                                     <---------YAB1                                                  <---------YAB1                                                  <---------AHL20(2)                                                 --------->AHL20(2)                                                 <---------AHL20(1)                                                 --------->YAB1                    --------->ANAC58           --------->ICU4                                     ---                    ----------->GT1        --------->TOE2(3)                                      ---                    --------->ANAC58      <---------bZIP60(1)                              <---------TOE2(3)     <---------ATHB12                     ----------->GT1--------->AHL20(2)   ----------->GT1  <----- <---------YAB1   ---------->DOF2    <---------ZAT6  --------->ICU4   --------->MYB52(1)  ---------->DOF2   attttcaatgagtctggaccgaaagtaacaagtgtattagtgtaacgtcaatattattattaaacaaaaaacaaaccgtgttgtaaaatgactaaagtaa  7238700    --------->DREB2C(2)    ------->GAMYB    <---------ETT(1)   --------->MYB46(3)                                          <----------DOF2   --------->DEAR3(2)                               ----------->TBP --------->MYB52(1)        ------>MYB83           --------->HSFB2a(2) ------>TOE1(3)            ------>MYB46(1)        <---------HSFB2a(2)   <---------ANAC58 ------>TOE2(3)          --------->AtMYB61     ------>ZmHOX2a(1)        <---------ANAC58 ------GT1 --------->YAB1<---------MYB59    ------>ZmHOX2a(1)<---------At4g35610         *TSS      <-   ccttaaccgacaacgatagttttaagaccaaaccagtagaactctcctccttctataaatctctgcttctcgttgcctctccaaaaccctctcaaactca  7238800                                                                       --------->ANAC58                                          ----------->RAV1(1)          --------->ANAC58       <------                                   --------->ANAC46                  <---------ANAC58     --------->HSFB2a(2)  -------->P                     --------->ANAC58                    <---------ANAC58     <---------HSFB2a(2)  ------->TEIL                   --------->ANAC46                 <---------ATHB12 <---------ANAC58 <-----------GT1                 --------->ANAC58           --------->ANAC58       <---------ANAC58 --------ATHB12                 <-------TEIL                --------->ANAC58    <----------DOF2  ----   aatcaaccttcttccatttttcaaattacaaacatacacaacaacaacaaaacctcttactcactccaatggctcgccttctctttcgtcttctcgtaga  7238900                                            <---------GLK1(1)                                     --------->LBD16                                     <------NtERF2                                  ------>NtERF2                                  --------->ABI4(1)                                 --------->DEAR3(1)                                 ------->GAMYB                    <---------WOX13(1)<---------ANAC46               --------->LBD16   --------->AtMYB61                            ---------->CDC5               ------>NtERF2     <---------ALFIN1                            ----------->RAV1(2)             <---------LBD16     --------->ANAC46                     --------->ZAT14           --------->ARR14(2)    --------->DREB2C(2)             ------>ZmHOX2a(1)------>NtERF2         <-----------HVH21     <---------ATERF1(1)        <-----------TGA1   ------>ZmHOX2a(1)     --------->ANAC46 --------->YAB1 ------>NtERF2  ================================HOX2a_HOX2a   <---------ALFIN1<-------GAMYB--------->MYB46(3)  ------>ZmHOX2a(2) --------->ZAT2   --------->ZAT6 <---------MYB46(3)--------->DEAR3(1)  ---------->ID1--------->At4g35610    <------- ---TOE1(2)<---------ARR14(2) <---------ALFIN1      ====================HOX2a_HOX2a    --------->ATHB12 ----->GLK1(2)<---------DEAR3(1)--------->DEAR3(2)--------->ARR11(3)  <---------At4g35610    <-------   atccaacactccgtctccggcgattgataactccaccgccgcgttgaattctgatctcgtcgtcatcctcgctgctctcctctgcgccttgatttgcgtt  7239000                                                                                                   <-                                                                      =======================HOX2a_HOX2a                                                  <---------ARR14(2)  ------>ZmHOX2a(2)            --                                                  --------->ARR14(2) <------ZmHOX2a(2)            ---                                                 <------NtERF2       ========================HOX2a_HOX2a                                                --------->LBD16      --------->GLK1(1)           ----                                               --------->RAP2.6(2)  <---------AGP1               ----                                              <---------LBD16       --------->ARR14(2)          <----                                             ------>NtERF2          <---------ARR14(2)         ------                                             <---------ZAT2         <---------ARR11(3)       <-------                                   <---------MYB52(1)              <---------CCA1(2)       --------->AtMYB61                                  <-----------HVH21      --------->ZAT14                   ------->GAMYB                 --------->HSFB2a(2)         --------->At4g35610   <---------ARR14(1)     --------->MYB46(3)   <----------DOF2              --------->ATERF1(1)      <---------ZAT14                <---------ALFIN1 --ANAC58        <---------HSFB2a(2)        --------->DEAR3(1)    --------->LBD16     ------>ZmHOX2a(1) --ANAC58    <---------MYB52(1) <------NtERF2--------->ZAT2     <---------LBD16      --------->ANAC46   ctcggcttaatcgccgtttctcgatgtgtctggctccgtcgtctcgcagccggaaacagaacagtctccggatctcaaactcaatctcctcaacctccgg  7239100     <------NtERF2   --------->DEAR3(1)   <---------DEAR3(1)  <---------At4g35610                                                  --------->O2  <---------ZAT2                                                       <---------At4g35610  --------->ATERF1(1)                                       --------->ANAC58  <------NtERF2                                             --------->ANAC46  --------->At4g35610                                 <---------ANAC58 --------->TGA1a <---------ATERF1(1)                             --------->At4g35610   <---------ZAT2 -----NtERF2                                     <---------HSFC1(2)    --------->At4g35610 ------->ATERF1(1)                               --------->HSFC1(2)    <---------TGA1a --->NtERF2                                      <---------At4g35610   <---------O2 ------->HVH21                                --------->LBD16          <---------ANAC55(2) ----->ALFIN1                    ------>ZmHOX2a(1)    <---------ANAC58 ----------->RAV1(2)      ----- -----MYB52(1)         >>>>>>>>>TBF1         --------->LBD16--------->ANAC58    <------NtERF2   <---- --->LBD16      ----------------->AGL1      <---------HSFB2a(2)        --------->ZAT2           <---- --LBD16   ---------->DOF2---------->DOF2   --------->HSFB2a(2)    <-----------HVH21           ------   tggcagcggcgaacaaaggcctgaagaagaaagtccttcaatctctcccgaagcttacgttctcgccagagtcacctgagtcggagaaattcgcagagtg  7239200                                                                                                 ----                                                                      ------->MYC3               <---                                                                      <-------MYC3               <---                                                                      <-------MYC2              <----                                                                      ------->PIF5     -------->ABF1                                                                      ------->MYC4     ------->PIF5                                                                      <-------PIF5     <-------MYC4                                 <---------GLK1(1)                    <-------MYC4     <-------PIF5                                 --------->At4g35610                  ------->MYC2     ------->MYC2                                 --------->ZAT2                      <---------PIF3(3) <-------MYC3                            ------>NtERF2                            --------->O2      ------->MYC3                           ----------->HVH21                         <---------O2      ------->MYC4                           --------->DEAR3(1)                        >>>>>>>>>>HY5     <-------MYC2                           <---------DEAR3(1)                      <---------ALFIN1   >>>>>>>>>>ABI5                          <------NtERF2                          <----------------PIF3(2)       -----                          --------->ATERF1(1)                    <-----------------PIF3(1)      -----                          --------->RAP2.3(1)                   <---------ARR14(2)    >>>>>>>>>>HY5                         <---------ATERF1(1)                --------->ANAC55(2)       >>>>>>>>>>AtMYC2                         <---------RAP2.3(1)                <---------ANAC46          <---------bZIP60(2)                         --------->LBD16                    <---------ANAC55(2)       <---------TGA1a                         ------>NtERF2                   ----------->HVH21<---------ANAC58      <----          --------->At4g35610    <---------ZAT2         <-----------HVH21 <---------ANAC46      <----          <---------At4g35610<------NtERF2              ----------------------->TaNAC69(2)      <----   ------>ZmHOX2a(2)    --------->DEAR3(1)           <---------ZAT18 --------->ANAC46 --------->O2  <------ZmHOX2a(2)     <---------ATERF1(2)          --------->ZAT14 --------->PIF3(3)--------->TGA1a --------->ARR14(2)     <---------DEAR3(1)          --------->ALFIN1 --------->TGA1a  <---------O2 <---------ARR14(2)     --------->ATERF1(2)     <---------ZAT14 <---------TCP20  ----------->HVH21--- ---->ZAT18            <---------LBD16          --------->ZAT14 --------->PCF2<---------AtLEC2 <----- -----ZAT18           ------>NtERF2          <---------At5g28300--------->ARR14(2)    --------->ANAC55(2) -----ZAT14          <-----------RAV1(1)    <-----------GT1<---------LBD16<---------ANAC58 <---------ANAC46 --->ALFIN1          ----------->HVH21--------->LBD16<---------ZAT14 <---------TGA1a  <---------ANAC55(2)   cgcgatctgtctagctgaattctctgccggcgacgagctccgagttttaccgcagtgtggtcacgggttccacgtggcttgcattgacacgtggctagga  7239300  Previous    Next  AGI:  At1g20823.1    Description:  zinc finger (C3HC4-type RING finger) family protein. Identical to RING-H2 finger protein ATL1B (ATL1B) [Arabidopsis Thaliana] (GB:Q9LM69); similar to ATL8, protein binding / zinc ion binding [Arabidopsis thaliana] (TAIR:AT1G76410.1); similar to zinc finger protein [Brassica rapa] (GB:ABK56013.1); contains InterPro domain Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) Range:  from: 7238789    to: 7239658    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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