Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                     <-                                                                                                   <-                                                                                                 ----                                                                                                 ----                                     <---------AHL20(2)          <---------AHL20(1)            <-----                                    <---------AHL20(2)           --------->AHL20(1)            <-----                                    --------->AHL20(2)           <---------ARR11(3)            <----- -------->MYB46(3)            ----------->GT1              --------->ANAC58                 <-------- --ZmHOX2a(2)                --------->AHL20(1)            --------->ANAC55(2)           --------->MYB52(2) --->ARR11(3)           --------->AHL20(2)                 --------->ANAC58              <---------MYB46(3) ----ARR11(3)           <---------AHL20(2)            <---------ZAT6                 <---------ANAC46 >DOF2          ----------->RAV1(1)<---------YAB1   <---------ANAC46     <---------------AGL15-------   caacaaatgagagaaatacaacacaaataaatatgttattaattttggtttgtttagtgtaacgcaatatttttcccaaaaattgtggtgtttgttacct  6985900                                                  --------->ATHB51   <-----------GT1                                <---------ICU4 ---------DOF2                                 --------->YAB1 --------DAG2                              <--------ATHB1 -->MYB46(1)                               -------->HAHB4 -->MYB83   <---------ANAC58               <---------ICU4                     <-------MYC3 ----MYB111(1)                            --------->ICU4                      ------->MYC3 ----MYB46(2)        <-----------GT1      <---------ATHB51         <-----------GT1 ----MYB59  <---------ANAC58              <---------YAB1      <---------GLK1(2)--------->ALFIN1 ---GT1     --------->TOE2(3)           --------->YAB1        <---------ARR11(3)          <----------DOF2 -->ANAC55(2)   <---------ARR11(3)     --------->AHL20(2)     --------->ARR11(3)  <---------AtMYB61   actttttacattttccttgatattcactacaaaatacccaaataataattcataatttcacatagatttttacatacaaacgtggaggttttctttgatt  6986000                                                                                            ------->GAMYB                                --------->ANAC58                                    <---------YAB1                                --------->ANAC46                                    <---------AHL20(2)                      <---------YAB1                                              <---------ICU4                    <--------ATHB1                                          ----------->GT1--------->ANAC46                    --------->YAB1                                         --------->DAG2--------->MYB52(1)                   --------->ICU4                                         ---------->DOF2<-----------GT1                   <---------ATHB12                                <---------ARR14(2)  <---------YAB1                <---------WRKY38(1)                           ----------->GT1 --------->AHL20(2)    -          --------->TOE2(3)     --------->ANAC58            --------->At4g35610  --------->ICU4     <   aaaacataaaaaccctagtcaatgatttttgcacacgtagataaactgtattttctgaaatcagatgtaaatctgaaaaagtaaatattattaacggaat  6986100                                  <---------AHL20(2)                                  <-----------GT1                               <---------ICU4                              --------->AHL20(2)                             --------->AHL20(1)                             --------->ARR11(3)    <---------TOE1(3)        <---------ARR11(3)            <-----------GT1    <---------TOE2(3)        <---------AHL20(1)  ----------->RAV1(1)    --------->DAG2    ----------->GT1      <---------AHL20(2)                                       < -------->At4g35610  --------->DAG2  <----------DOF2  --------->AHL20(2)                            < ---------At4g35610 ---------->DOF2  <---------DAG2 --------->TOE2(3)      --------->TOE2(3)     <---   acagctaaggtgaagtttgtggaaaagtaaaaatatttactttatttaaaacaacataaattttccattttttaaaaacttaaatttccaatatttgttt  6986200                                                        <------NtERF2                                                       --------->LBD16                                                       ----------->GT1                                                       <---------RAP2.6(3)               ------>MYB46(1)                                                      --------->RAP2.6(2)             --------->DEAR3(2)                                                      --------->ATERF1(2)           <-----------GT1                                                      <---------ATERF1(2)          ---------->DOF2            --------------->AGL15                    <---------LBD16              <---------ATHB12        --------->ZAT14                              --------->RAP2.6(3)      ------------>CBF     <---------At5g28300                    --------->ANAC58                 --------->ANAC58    <-----------GT1                         --------->ANAC58                 --------->ANAC58 ---------DAG2         ---------->DOF2      --------->ANAC46                 --------->ANAC46       - ----------DOF2------>ZmHOX2a(1)          ---------->DOF2                  ---------->DOF2        --- --------GT1<---------------AGL15     --------->TOE2(3)------>NtERF2   --------->TOE2(3) ------>MYB83   tactttttactgttctcctattagtaaaaggagtagattaacttaaaagcaataagccggcaaaaaaaaaaaaacttaaaagcaataaaccgacttgaat  6986300                                                                            <---------ARR14(2)                                                                            --------->ARR14(2)                                                                          ----------->ARR10                                                                          --------->DEAR3(1)                                                                         <------NtERF2                                                                        ------>NtERF2                                                                       --------->DEAR3(1)                                                                      <---------At4g35610                                                                      <---------ABI4(2)         <------------CBF                         --------->AtMYB61   <------NtERF2       --------->ARR11(3)                        *TSS--------->YAB1   --------->At4g35610         ---     <---------TOE2(3)                    --------->TOE1(3)    --------->WOX13(1)           <--------  <---------ATHB12                        --------->TOE2(3)  <---------ATHB12               <-------- -------->WOX13(1)                     <---------ALFIN1    --------->WOX13(1)      ------>ZmHOX2a(1) --------->CBF   ----------->TBP    --------->HSFB2a(2)   --------->MYB46(3)<---------GLK1(2)    ----   accaattaagaaattggctataaataaggctccaacttcccaaaccttgacaccatcacaacaatcaatcgcagcgccgattctccttcaaaaacttttc  6986400                                                                   --------->TOE2(2)                                                            --------->At5g28300                                                       ----------->HVH21                                                       --------->DEAR3(1)                                                   --------->At4g35610                                                   --------->GLK1(1)------>ZmHOX2a(1)   <---------DEAR3(1)                                                   <---------GLK1(1)==============HOX2a_HOX2a                                             =====================================HOX2a_HOX2a                                             ------>ZmHOX2a(1)     --------->TOE1(2)   <------NtERF2             <-----------GT1                --------------------->WRI1 --------->HSFB2a(2)    <-----------HVH21                       --------->TOE1(3)   --------->ARR14(2)    <-----------HVH21 --->ZmHOX2a(1)<---------YAB1         --------->ARR11(3)   ----------->GT1 <------ZmHOX2a(2) --DOF2  <----------DOF2<---------ARR14(2)  --------->TOE2(3)   <---------ARR14(2)   --------->DEAR3(1) -DAG2   <---------DAG2 --------->ARR14(2)<---------YAB1  <---------DEAR3(1)    <------ZmHOX2a(1) ----->TOE2(3)<---------TOE2(3)       <---------ARR11(3)------>NtERF2  <---------HSFB2a(2)   <-------   ctaagtcgtcactttttacgatggcagaaacgaagaagatgatcatccttaagagctccgacggtgaatccttcgagatcgaggaagccgtcgctgttaa  6986500                                                                              --------->ANAC58                                              --------->GLK1(1)               --------->ANAC58                  --------->ATHB12            <---------GLK1(1)              ------>ZmHOX2a(1)                 <---------YAB1            ------->GAMYB               --------->ATERF1(1)                 --------->ICU4           <---------ANAC55(2)         ------>NtERF2                ------->MYC3            --------->MYB52(1)         --------->LBD16 <---------TOE2(3)         ---------->DOF2                <---------DOF5.7(2)      --------->At4g35610 <-----------RAV1(2)               <-----------------AGL1        <---------At4g35610 --------->HSFB2a(2)     <------ZmHOX2a(1)--------->ANAC55(2)    <---------LBD16   <---------TOE1(3) <---------HSFB2a(2)<---------WOX13(1)--------->DOF5.7(2)        ----------->RAV1(2) --MYB52(1)     <-------MYC3       ----------------->AGL1    <-----------HVH21--------->ANAC46   gtcccagacgattaagcacatgattgaggacgactgtgccgataacggaattccacttcccaatgtcaccggagccatcctcgccaaggttattgagtat  6986600                                <---------ANAC46                             --------->ALFIN1                           <---------At4g35610                     --------->At4g35610                  <---------At4g35610                    <---------At4g35610                  --------->At4g35610                <---------ARR14(2)            ---------->DOF2<---------ZAT2   <---------GLK1(1)                                      --         ------->MYC3----------->RAV1(2)    --------->GLK1(1)    <----------ID1             <--------         <-------MYC2<---------At4g35610--------->ANAC58 --------->At4g35610                ---------         ------->MYC2<---------ZAT2     --------->ANAC58 --------->LBD16                <------------         <-------MYC3--------->ZAT2<----------ARF1   --------->ARR14(2)                 <---------At4g35610   tgcaagaagcacgttgaagccgctgctgaagctggtggagacaaggatttctatggttccgctgagaacgacgagcttaagaattgggacagcgaattcg  6986700       <------ZmHOX2a(2)                 ---------->DOF2    --------->MYB59                    <----- -------->DOF2                           --------->ZAT14    <---------TOE1(3)            --------->AHL20(2) -ARR14(2)  <---------ZAT18         <--------P     <---------YAB1                 <---------TOE1(3) >ARR14(2)--------->At4g35610     <---------MYB46(3)        <---------TOE2(3)     <---------TOE2(3)<- ---------WRI1            ------>ZmHOX2a(2)      <----------DOF2   <---------TOE2(3)     <---------AHL20(2)   tcaaagtcgatcagcctactctcttcgatctcatcttggttagtaaagtcgctttcattgtttaggtttgatgttgttagaattagggtttttaatttgg  6986800  Previous    Next  AGI:  At1g20140.1    Description:  ASK4 (ARABIDOPSIS SKP1-LIKE 4); ubiquitin-protein ligase. similar to ASK3 (ARABIDOPSIS SKP1-LIKE 3), protein binding / ubiquitin-protein ligase [Arabidopsis thaliana] (TAIR:AT2G25700.1); similar to putative kinetochore protein [Hordeum vulgare subsp. vulgare] (GB:CAB85491.1); similar to unknown [Populus trichocarpa] (GB:ABK92824.1); similar to putative SKP1 protein [Triticum aestivum] (GB:CAE53885.1); contains InterPro domain SKP1 component, POZ; (InterPro:IPR016073); contains InterPro domain SKP1 component; (InterPro:IPR001232); contains InterPro domain BTB/POZ fold; (InterPro:IPR011333); contains InterPro domain E3 ubiquitin ligase, SCF com Range:  from: 6986349    to: 6987261    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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