Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                    ----------->GT1                                                         --------->CCA1(2)                                                        <---------ARR14(2)                       <---                                                    <------ZmHOX2a(1)                          ------                                                  <---------TOE2(3)                   <---------ATHB12                        --------->AHL20(2)        <---------TOE1(3)                 --------->WOX13(1)                       <---------YAB1      --------------->AGL15 <---------------AtSPL3       <------                     --------->YAB1        <---------------AGL15 --------------->AtSPL8       ------- -------->ARR11(3)  <---------ATHB12      ----------------->AGL3 <---------------AtSPL8--------->YAB1 ->ZAT6  ------>ZmHOX2a(1)            <---------ATHB12  --------->ARR11(3)       --------->TOE2(3)--- ->RAV1(1)---------->DOF2           --------->WOX13(1)  <---------ARR11(3)      --------->YAB1<------   aagacattgtcctaaagtttcagtcattatatcatttgcaatcagccaatttaaggaagatatagaaatggtactaaaacaaacatcaatcatattccag  6894300                                                               --------->ARR14(2)                                                             --------->ANAC58                                     <<<<<<<GRF7 --------->GLK1(2)<-----------------AGL1                                   ----------->HVH21         --------->ANAC46 ---ZmHOX2a(1)                    <---------MYB59<---------ARR14(2)  <----------DOF2 --->LBD16                       ----------->RAV1(2)         --------->ANAC58   <---------ZAT18 ---HSFB2a(2)                    <---------At4g35610     <------NtERF2     <---------ZAT14      <---- -->HSFB2a(2)                    ===============================RAV <---------DAG2           <------- ------->DOF2                    --------->ANAC55(2)<-----------RAV1(1)    --------->ZAT18   -------- ---LBD16                      <-----------GT1   --------->ARR11(3)--------------->AGL15<---------ICU4   gaaagcttcaatctaatgaactacaatgtcattttacctgacaaagtttaaaatctggtggccacgatacccttttgtgcaatgccctcatagttacaga  6894400                                                                                               ------                                                                                               ------                                                                                               ------                                                                                           <---------YAB1                                                                                        <---------AHL20(2)                                                                                     --------->ATHB51                                                                                     --------->AHL20(2)                                                                                     <---------ICU4                                                    <---------LBD16<-----------GT1   <---------AHL20(2)                                         <------ZmHOX2a(1)        <-----------GT1    <--------ATHB1 -                                       --------->LBD16    <------MYB46(1)           <---------ATHB51<         <----------DOF2        <----------DOF2     <-----------RAV1(2)             <---------ATHB12< -----GLK1(2)     --------->TOE2(3)   <---------HSFB2a(2) <------MYB83 <----------DOF2  --------->AHL20(2) --HSFB2a(2)      >>>>>>>>>RAP2.2     --------->HSFB2a(2)--------->MYB59       --------->TOE2(3)    - ->HSFB2a(2)   --------->WOX13(1)     <---------LBD16  <------ZmHOX2a(1)  --------->AHL20(2) --------   aactctcacttctttttcaatctaaaaatcaattctttttccaggaaaattgattcaggaaggtccaattacccttttaaatctcaataatttatcaaag  6894500    <----------DOF2             --------->LBD16 --->ANAC58         <---------ICU4 --->ANAC46         --------->YAB1                             ---------->DOF2 --->ANAC58         -------->ATHB1                           <------ZmHOX2a(1) -------->ZAT2     <---------ATHB12                        >>>>>>>GRF7 ---------ZAT2   --------->WOX13(1)                     <-----------HVH21                           < ---------At4g35610<---------ATHB51                  <----------DOF2                              <-- -------->At4g35610--------->ICU4              --------->TOE1(3)          --------->GLK1(2)       --- -->DOF2<<<<<<<<<RAP2.2        --------->LBD16 --------->TOE2(3)    --------->CCA1(2)        <-------   ccagctctttagattgaaccaattattctcatcccgagttatcgaaaaaccctaactttgtcaggaaaagatagagaatttaagaagagaagatgatgaa  6894600                                                                                               <-----                                                                                               ------                                                                                        xxxxxxxxxxxxx                                                                                    <---------LBD16                                                                                   ------>ZmHOX2a(1)                                                                                 ------>ZmHOX2a(2)                                                                                <------ZmHOX2a(2)                               --------->ANAC58                                --------->AGP1<<<<<<<<              <------ZmHOX2a(1)--------->ANAC58                                <---------ARR11(3)    ------->TEIL      --------->HSFC1(2)                                       <---------ARR14(2) ---------TOE2(3)     <---------HSFC1(2)                                       <---------GLK1(2) -------AHL20(2)  --------->ANAC58   --------->ARR14(2)                        --------->ARR11(3) ------>AHL20(2)  --------->ANAC58   <---------ARR14(2)                        --------->ARR14(2) --YAB1 --------->LBD16  --------->At4g35610                                 ----------->ARR10<------   ttaatgaatccagagaggagacgaaacatctgcaagctaaatccgtcgagatagagagaaggaatcgattgtgaagccctagatcctctgggttcttctt  6894700                                                                  <---------ZAT14                                                                  <---------REM1(2)                                                            <-------MYC3                                                            <-------MYC4                                                            ------->MYC4                                                            ------->MYC2                                                            <-------MYC2                                                            ------->MYC3    --------->SPL7                                                            -------->ABF1   --------->ARR14(2)                                                           --------->ANAC55(2)                                                           --------->TGA1a  ------->TEIL                                                           <---------O2  --------->RAP2.6(2)            <-----------TGA1     <---------RVE1(1)         --------->O2 --------------->AtSPL8           --------->YAB1       <---------GLK1(2)          --------->ANAC46<---------ALFIN1 ----------AGL15    <-----------GT1     =============================bZIP_DOF --------->AGL15   <-----------GT1      <----------DOF2    <---------ANAC55(2) xxxxxxx>smallRNA(le3)      ------>ZmHOX2a(1)              <---------TGA1a<---------SPL7 <TBF1 --------->MYB46(3)  *TSS --------->ARR11(3) ------>ZmHOX2a(1)    --------------->AtSPL3 -----------AGL1  <---------AHL20(2) <-----------GT1 ----------->TBP  --------->DEAR3(1)           <-   cttatggtcaccatcgtcattttatctgtcctcagattttttctttccttctcctatatacacgtgtcttcacagccgtacccccttcatgtttctatat  6894800                                                                                                 ----                                                                                                 ----                                                                                                 ----             <---------MYB52(1)                                                                 -----        --------->GLK1(2)                      ---------->DOF2                                  <----     <---------GLK1(2)                     ---------->DOF2      <---------WOX13(1)             <-----     <---------ARR11(3)       <---------HSFB2a(2)             --------->ATHB12                <------   --------->LBD16            --------->HSFB2a(2)            <---------YAB1                   <------ <---------LBD16 <----------DOF2    ------->GAMYB        <---------GLK1(1)         --------->At4g35610 ----------GT1   --------->TOE2(3) --------->MYB46(3) <---------YAB1     ---------->DOF2      <------   tttcccagataatccattactttagtctatttctataacgacccctaaagaaagttttgatttctgattggaaaacaaagtcaatagcagccagtttcgt  6894900  --------->ATHB12 ----->WRKY45                                                                                  ------ ----->WRKY38(1)              ------->TEIL                                                 --------->YAB1 ----->WRKY12              --------->ANAC58                                          --------->AtMYB61 ---->DOF5.7(2)            --------->ANAC46                                       --------->ANAC46 -----MYB52(1)             --------->ANAC58                                      --------->ZAT18 --GAMYB                --------->TOE1(2)                                    --------------->AtSPL8 ---ANAC46         --------->MYB46(3)                                        <---------------AtSPL8 ---ANAC58     --------->MYB46(3)                                    --------->SPL7 --------->ANAC46 ---ANAC58 <---------YAB1 <---------TOE1(2)                        <---------SPL7<---------ZAT18 <---   tgactcattagttatcatccaacaatcccacgaacttgtttttttgtagaccatgttctatttctgagccgttcgaagaattgtacaccacaaggagaat  6895000                                          --------->ANAC58                                          --------->ANAC58                                     <---------YAB1                                   --------->YAB1                                   --------->ATHB51                                   -------->ATHB1                                   <--------HAHB4                                   <---------ICU4                                   -------->HAHB4                                  <---------ATHB51                                  <---------YAB1                                  --------->ICU4                                <---------ICU4                                --------->YAB1                               <---------AHL20(2)                            <---------RVE1(1)                            <---------CCA1(1)                           --------->AHL20(1)                  --------->ICU4         <-------TEIL          ----------->GT1  <---------ARR11(3)             <---------bZIP60(1)     --------->ANAC58         --------->DAG2    --------->ARR11(3) <----------DOF2--------->YAB1       --------->ANAC58        ---------->DOF2   --------->YAB1  --------->ANAC46--------->bZIP60(1)--------->ANAC58 --->GLK1(2)           ---------->DOF2<-----------GT1   --------->ZAT14      --------->ANAC58 ------AHL20(2) --------->YAB1 --------->AHL20(2)  ---------->DOF2           --------->ANAC46   tttttggtagaaaagtaacaataaccaaagatattaattattacacgacttttaaaagtgaagtcataatccattgttcacgacaagcttcatattaagt  6895100                                  ------>MYB46(1)                             ------>MYB83                           <---------MYB46(2)                           <---------MYB111(1)                           --------->AtMYB61                           --------->MYB46(3)                          --------->ANAC58                          --------->ANAC46                          --------->ANAC58                       -------->P ------>MYB83                       ------>MYB83  --------->AHL20(2)                            ---------->DOF2 <<                       ------>MYB46(1)                                         ---------->DOF2     <<                      ----------->RAV1(1)                              <---------AHL20(2)          ==                     --------->AtMYB61          <---------MYB52(1)    <---------AHL20(2)           <-             --------->LBD16 ------>MYB46(1)   ------>ZmHOX2a(1)      --------->AHL20(2)      ------- <------ZmHOX2a(1)  --------->MYB46(3)         <----------DOF2        <---------AHL20(1)----------->GT1   tgaggaggttttgtccgaaaaaaccaacaccaaaccaaatcaaataatcctttagtcacaaaaatcaaacaattttttttataaagaaagaagaaaaaac  6895200  Previous    Next  AGI:  At1g19860.1    Description:  zinc finger (CCCH-type) family protein. similar to zinc finger (CCCH-type) family protein [Arabidopsis thaliana] (TAIR:AT3G51180.1); similar to hypothetical protein [Prunus persica] (GB:AAO14624.2); contains InterPro domain Zinc finger, CCCH-type; (InterPro:IPR000571) Range:  from: 6891420    to: 6894727    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At1g19870.1    Description:  IQD32 (IQ-domain 32); calmodulin binding. Identical to Protein IQ-DOMAIN 32 (IQD32) [Arabidopsis Thaliana] (GB:Q9FXI5;GB:Q570I0;GB:Q8LFD0;GB:Q8LPF6); similar to IQD31 (IQ-domain 31), calmodulin binding [Arabidopsis thaliana] (TAIR:AT1G74690.1); similar to hypothetical protein OsJ_015789 [Oryza sativa (japonica cultivar-group)] (GB:EAZ32306.1); similar to OSIGBa0099L20.2 [Oryza sativa (indica cultivar-group)] (GB:CAH66887.1); similar to Os04g0663100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001054161.1); contains InterPro domain IQ calmodulin-binding region (InterPro:IPR000048) Range:  from: 6895006    to: 6898716    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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