Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                            --------->HSFB2a(1)                                                          <---------HSFB2a(1)                                                          --------->HSFC1(2)                                                          <---------HSFC1(2)                                                   --------->CCA1(2)                                                  --------->ARR11(1)                                                  <---------ARR14(2)                                                  --------->ARR14(2)                                                  --------->ARR11(3)                                                  <---------ARR11(3)    <------NtERF2          <---------ALFIN1     ----------->ARR10  ----------->HVH21  <---------LBD16     <---------At4g35610     ---------->DOF2    <----------DOF2                  --- <---------LBD16      --------->At4g35610  --------->ANAC58<---------ANAC58                      <--- -GT1        <----------DOF2               --------->ANAC58<---------ANAC58                      ----   tttctcggcaaaattctttttataagctcacacatcttcgatagcaagtaaagatatggatgcttctctttgacatattgtttttagtggattagtgaag  6826600                                       <-----------GT1                                     <---------WOX13(1)                                   -------->ATHB1                                         <----------                                   <---------ICU4                                        --------->ATHB12             ------->TEIL         <---------AHL20(2)                                    --------->AHL20(1)         --------->ZAT6           --------->AHL20(2)       <---------AHL20(2)           <---------AHL20(2)       --------->MYB52(1)         <---------ATHB51         --------->AHL20(2)           --------->AHL20(2)   <------ZmHOX2a(1)              --------->ICU4        --------->AHL20(2)             --------->AHL20(2) ------>CCA1(2)             ----------->GT1   --------->ANAC46              <---------AHL20(2) ------ARR11(3)       <-----------RAV1(1)--------->ZAT6--------->AHL20(2)  --------->AHL20(2)       < ----->ARR11(3)  ------->TEIL--------->At5g28300   --------->AHL20(2)      <---------AHL20(2)      --   atttaggactaactgtatgtatttttgttggggtaaattattaactctacgaaaaaaataaaaaattgagagaaaaattaaatcaacaaattaattggct  6826700                                                             ----------->GT1                                                             --------->LBD16                                                      <--------P                                                      <---------MYB52(1)                        <----                                                     --------->At5g28300                        <----                                                     <-------GAMYB                             ------                                                    <---------MYB46(3)                         <-----                                                    <---------DEAR3(2)                       <-------                                                 ------------>AtMYB77                      <---------MYB46(3)                                                 --------->MYB52(1)                       --------->ALFIN1                        --------->AHL20(2)      --------->DEAR3(1)                        <---------AtMYB61  --------->ZAT6<---------LBD16                --------->DEAR3(2)                      <---------TOE2(3) --CBF      <----------TaMYB80 ---------->DOF2 --------->MYB46(3)                  <----------DOF2 ---------AHL20(2)--------->LBD16      --------->CCA1(2)   <---------LBD16      --------->ARR11(3) ------->YAB1  --------->MYB52(1) --------->YAB1----------->HVH21               <---------ARR11(3)   attaaaactactgtatataccggaaaataaatccaaagatgatatgaaaaccgacggttagtccggttaataccgaaatcaagttctttgaggtggtttg  6826800                               ----------->RAV1(1)                              --------->ANAC58                              --------->ANAC58                             --------->LBD16                            --------->ANAC46                    <------MYB83                    <------MYB46(1)                                    <------ZmHOX2a(2)      <----------DOF2<-------GAMYB                                   <------ZmHOX2a(1)   ---------->ID1   <---------MYB46(3)                     ---------->DOF2 --MYB46(1)       <---------MYB52(1)                   <----------DOF2<-----------ARR10 --MYB83         <-------GAMYB----------->HVH21        --------->TOE1(3)      <----------DOF2    ---- --->MYB59      <-----------RAV1(1)              --------->ANAC46 <------ZmHOX2a(1)              <--- ----AtMYB61    <---------MYB46(3)<------------CBF     --------->TOE2(3) ---------->DOF2         <--- --ANAC46  <------------CBF<---------LBD16     --------->ZAT6   --------->ALFIN1   <<<<<<<<<MYB98----   gttttgttctttcgattgctgttggttatcgcgcgacattgtttttctaacacaaaactttaaaaggaggaggatcaaagcttttgttaggggttttgga  6826900             <-------TEIL            --------->GLK1(2)            --------->CCA1(2)           --------->ARR11(1)          <---------HSFC1(2)          <---------HSFB2a(1)          --------->HSFB2a(1)                                   --------->At4g35610         ----------->ARR10----------->TBP         <---------ARR14(2) ----->ZAT2--------->ARR14(2)               ----------->GT1   --------->YAB1 ------ZAT2<---------ARR14(2)         --------->DAG2        --------->GLK1(2)                  <----- ------At4g35610 --------->ZAT2      ---------->DOF2   --------->ANAC46             --------->GLK1(2) ----->At4g35610 <---------ZAT2   --------->ANAC46--------->ARR14(2)            <------ZmHOX2a(1)  --   gctggacaagggagattcgagctcgagtatatatacacataaagtctggtaatatccacgagaatcagaagacgagatgctaggagaatgtggaaggctt  6827000                                                                    ---------->ID1                                                              <---------GLK1(2)                                                              <---------ARR14(2)                                                              --------->ARR14(2)                                                          <------NtERF2                                                          <---------LBD16                                                         --------->LBD16                     <-------                                                         ------>NtERF2                       --------                       <---------ANAC58                 --------->ANAC46                 ---------->DOF2           --------->MYB52(1)                          <---------LBD16      --------->At4g35610          --------->ARR14(2)                        --------->ARR14(2)      <---------At4g35610 -----DOF2<---------ARR14(2)                        <---------ARR14(2)      <---------ZAT2   <------- -------->DOF2         <---------ANAC58    <---------ATHB12 --------->LBD16 --------->ZAT2 ----------   ttaaagacagagaaaccggtcgatttcgttccaattccttcgccaatcgattcaaatcccgccggattttgtctctccagctctctaatcgaaaagattt  6827100                                                                       <----------DOF2                                                                   <---------MYB52(1)                      <---------DOF5.7(2)                        --------->ANAC55(2)      ------>ZmHOX2a(1)                           <---------ANAC58 ----------->HVH21 --GLK1(2)          --------->DOF5.7(2)    <---------At4g35610   --------->ANAC46 ->ARR11(3)         <---------MYB52(1)   <-----------RAV1(2)     <---------ANAC58 --ARR11(3)        <-------GAMYB  <---------GLK1(2)              <---------ANAC58        <---------At4g35610 ->ARR10         <------NtERF2 <-----------RAV1(2)<---------ANAC58--------->LBD16    <----------DOF2   tgtttctcctcatcgtggctccgttaactcccttcaggttctctcagatgtttcttgctcttcttatccgtgacttttgttctcagtctttggctgagaa  6827200                   --------->HSFB2a(2)                   <---------HSFB2a(2)                  ------>ZmHOX2a(2)                 <------ZmHOX2a(2)                 --------->CCA1(2)                --------->AGP1                <---------ARR14(3)                                                 ----------->GT1                <---------AGP1                                                 <-------GAMYB                <---------ARR14(2)                                            <---------MYB46(3)                --------->ARR14(2)                                         <---------ZAT2                <---------ARR11(3)                                         --------->At4g35610                --------->ARR14(3)                            ----------------->AGL3                --------->ARR11(3)                    <---------HSFB2a(2)  --------->ZAT2  <---------At5g28300               --------->RVE1(1)                      --------->HSFB2a(2)  <---------At4g35610            ---------->DOF2                      <---------At4g35610      --------->MYB111(2)      --------->AHL20(2)                      --------->At4g35610         --------->MYB111(1)  --------------->AGL15     ------->TEIL      <---------At4g35610        <--------P<---------ZAT6  ==============================================================================MADS_MADS <----------   atcactaaaaatataaaagatctgggactgaatctagtttatgtagtttgctgcttctagagtagccatattttggtagctggttgtgttattaactgtg  6827300                                                          --------->At4g35610                                                          <---------At4g35610                                        <---------At4g35610                        <------NtERF2                          --------->ARR11(3)           --------->At4g35610        ------>NtERF2                          <---------ARR11(3)           --------->ZAT2            <---------ALFIN1                          --------->ARR14(2)           <---------At4g35610      <---------ABI4(2)                          <---------ARR14(2)           <---------ZAT2          <---------PCF2                         <---------GLK1(1)  <-----------RAV1(2)                --------->PCF5                         --------->RVE1(1) <---------At4g35610                 <---------ATERF1(1)                         --------->GLK1(1) --------->At4g35610                <---------PCF5             <---------LBD16            --------->At4g35610 <----------DOF2   ------>NtERF2           ----------->HVH21  --------->At4g35610<---------MYB46(3)           <---------ATERF1(1)       --------->ATHB12 --------->ARR11(3)=======================RAV         <-----------TCP11(1)      <-------TEIL      <---------ARR11(3)----------->RAV1(1)       <---------TOE2(3) -GT1<--------P  --------->ALFIN1  <---------LBD16   <-----------RAV1(2)     --------->ZAT18        -   ttatcaggttgatttgacggaggggagatatctgctctctggagcagcagatggttcagctgctgtatttgatgttaagcgggccaccgattacgaggca  6827400                                                                                     <------MYB46(1)                                                                                     <------MYB83                                           ----------->RAV1(1)                    <---------MYB52(1)                                        --------->ANAC58                      ------>NtERF2                                        --------->ANAC46                   ------>ZmHOX2a(1)             --------->ANAC58           --------->ANAC58                   --------->At4g35610             --------->AtLEC2          --------->SPL7                  <---------ARR14(2)             --------->ANAC58         <---------MYB52(1)               --------->ARR14(2)         ---       <---------WOX13(1)     <---------At5g28300                      <---------ARR11(3)      ------ -------->ZAT18              <-----------GT1                          <---------CCA1(2)<---------GLK1(1)   agtggtctaattgccaagcacaagtgtatttttactgtccgtaagcaacatgaaaatggacataaatatgccatatcctctgccatttggtatcccattg  6827500  Previous    Next  AGI:  At1g19750.1    Description:  transducin family protein / WD-40 repeat family protein. similar to ATCSA-1, nucleotide binding [Arabidopsis thaliana] (TAIR:AT1G27840.3); similar to ATCSA-1, nucleotide binding [Arabidopsis thaliana] (TAIR:AT1G27840.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO61475.1); contains InterPro domain WD40 repeat-like (InterPro:IPR011046); contains InterPro domain WD40/YVTN repeat-like (InterPro:IPR015943); contains InterPro domain WD40 repeat (InterPro:IPR001680) Range:  from: 6826988    to: 6830054    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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