Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                      --------->ANAC58                               <------NtERF2                    --------->ANAC58         ---------->DOF2  ------->PIF5                  <-------GAMYB          <------MYB46(1)         <---------ICU4              <-------PIF5                 ----------          <------MYB83 ---------->DOF2 <---------YAB1       <---------LBD16                <---------MYB46(3) ------DOF2     --------->ANAC46 <---------YAB1            <---------ALFIN1  --------->ANAC55(2) -->HVH21--------->MYB59         --------->ICU4         --------->PCF2       <---------ANAC55(2)<----   ttgctatcgatttggtatgcgcaagaaaagaagtcattcttacaattgaaagtctagagacccacgggcatcgtttatcacttattccaaagatggttat  6719000                            --------->ATHB12                           <---------YAB1           <---------AHL20(2)       --------->YAB1 <--------                       <---------WOX13(1)    ------->TEIL                 --------->YAB1   <---------AHL20(2)                       <----------DOF2      <---------AtLEC2         <------MYB83  <-----------GT1  <---------ANAC58    <---------ANAC58    <---------YAB1         --------->ATHB12  <---------AHL20(2)  <---------ANAC58    <---------ANAC58 ------>ZmHOX2a(1)     <---------AHL20(2)--------->ICU4 ->GT1          --------->ZAT18===============HOX2a_HOX2a   --------->AHL20(2)<---------AHL20(1) -----YAB1      <---------ZAT14------>ZmHOX2a(2)   --------->AHL20(2)<------MYB46(1)       --------->AHL20(2)   gtttacttgttctctatgtggactgcttgatgatcggtttccttatgcatgtattaaatgtattaaatgtttggtttcataatatttaacttataaattt  6719100                                                           <---------AHL20(2)                                                           --------->AHL20(2)                                                         <---------YAB1                                                         ============================================                                                         <---------------AGL15                                                      --------->AHL20(2)                                                      <---------AHL20(1)                                                      <---------AHL20(2)                              <-----------GT1      <---------AHL20(1)                       <--------                   <---------ANAC46                --------->AHL20(2)                  --------->ANAC58                   <---------ANAC58                --------->AHL20(1)                  --------->ANAC58                   <---------ANAC58               <---------AHL20(2)                  --------->SPL7                <----------DOF2               <---------AHL20(2)                   <---------ANAC58   --------->TOE1(2)   --------->AHL20(2) <---------MYB52(1)<---------YAB1         <---------ANAC58 xxxxxxxxxxxxxxxx>smallRNA(s)<---------AHL20(2)<---------AHL20(2)                 --------------->AtSPL8 -AHL20(2)    ------>ZmHOX2a(1)<-----------GT1--------->AHL20(2)   <---------AHL20(1) --------->ZAT18   gtatacctgctatctcctctttcgtttaaatttaaactttcttcgttattaaatattttatttttatagtatattttagaatgttgagtaccccatttct  6719200                                                      --------->ATHB12                                                     --------->AHL20(1)      <---------AHL20(2)                             <---------AHL20(1)   --------->AHL20(2)                                <---------AHL20(2)   <---------AHL20(1)                       <---------ICU4   --------->ARR11(3)           ----------->GT1 <---------AHL20(2)   <---------AHL20(2)       <<<<<<<<<EIN3  <---------YAB1            --------------->AGL15   --------->AHL20(1)    ============================================================MADS_MADS   <---------ARR11(3)  --------->ZAT14   --------->YAB1       --------->DAG2                      ---  --------->AHL20(2)   <---------ZAT14 <-----------GT1<---------AHL20(2)        ----------->GT1<----- ========================================MADS_MADS   --------->AHL20(2)  ---------->DOF2       <----- -CCA1(2)<---------ANAC46--------------->AGL15  --------->AHL20(2)   <----------DOF2         --------   caaaatatattatgggtatttctactgcaatgtatagaaattttcatcatttaaatttattgaaaaggtttctttgaaaggaaggaaaatcgaatttata  6719300                                                        --------->ANAC46                                                        --------->ANAC58                                                       --------->WOX13(1)                      <---------MYB52(1)           --------->YAB1              --------->ANAC46                     --------->At5g28300        --------->WOX13(1)             --------->ANAC58                     <---------RAP2.6(3)     <---------PCF2                    --------->ANAC58                    --------->RAP2.6(2)      <---------TCP16(1)                --------->AtLEC2    <-                 ------>NtERF2               <---------ARR14(2)              <-----------RAV1(2)   --                <---------ATERF1(2)          --------->ARR14(2)             <-------TEIL           <-                --------->ATERF1(2)        --------->LBD16        ------>ZmHOX2a(2)                --               <---------ANAC58           <---------ANAC58        <---------MYB59                 --- ------>ICU4   <---------ANAC58           <---------ANAC58       <------ZmHOX2a(2)                --- ----AHL20(2) --------->At4g35610        <---------LBD16--------->ANAC58--------->MYB59           --- ----YAB1     <---------At4g35610       <-----------RAV1(1)     --------->ARR11(3)              ----- ->YAB1      <-----------RAV1(1) <<<<<<<<<TAC1 <-------TEIL     <---------ARR11(3)       <---------TOE1(2)   atttttaaaaaccttgtgctggccgtaactcaaacactgtctctgcgggtccatcatcaagcaagggatctaattcggttcaggcaaatcacatgttcac  6719400                                                                    ------>ZmHOX2a(2)                                                                   <------ZmHOX2a(2)                                                                   --------->GLK1(1)                                                                  <---------ARR11(3)                                                                  --------->ARR11(3)                                                                  <---------ARR14(2)                                                                  --------->ARR14(2)                                                                  <---------ARR14(3)           --------->REM1(1)                                      <---------AGP1       <-----------HVH21                                    ------->PIF5      ----------->GT1                                       <-------PIF5      xxxxxxxxxxxxxxxx>smallRNA(i)                         <---------At4g35610  ---------->DOF2                                          --------->ZAT2 --------->MYB52(1)                                        <---------ZAT2 ------>MYB83                                              --------->At4g35610 ------>MYB46(1)                                           ----------->RAV1(2) --------MYB46(2)                                         ------->TEIL ------->MYB46(3)                                        <---------ALFIN1 --------MYB111(1)  <---------MYB52(1)                 --------->ANAC58                          <--- ------->AtMYB61   --------->LBD16             <---------At4g35610--------->ARR14(3)             ---- ------>ANAC58    --------->LBD16              --------->ZAT2     <-----------ARR10            ------ ------>ANAC58   <---------LBD16              --------->ANAC58   <---------At4g35610          ------- ------>ANAC46  <---------LBD16        *TSS   --------->ANAC58   <---------CCA1(2) --------->ZAT18  < ---->ANAC46 <---------At4g35610  <---------ICU4       --------->ANAC58            <---------ZAT18---   accaaacagcgttacatctcccggtttttgttttcaacatgacaactcaagctcccctcgcacctgcagatctcgttgggattagtggtctaaacgatga  6719500                      <---------ANAC58          ------->GAMYB                      <---------ANAC58        --------->At4g35610                   <-------MYC3             <---------WRKY38(1) ------YAB1        <-------MYC2            >>>>>>>>>>WRKY63                            --------->ATHB12 ----->ICU4  --------->REM1(1)           --------->ANAC58      <--------P             <------ZmHOX2a(2) --->YAB1  <-----------GT1               --------->ANAC58     <---------MYB52(1)      <---------YAB1 -->ICU4----------->GT1       <---------ZAT18----------->RAV1(1)         <----------DOF2 ---------WOX13(1) ------->MYC2    --------->ANAC58          --------->LBD16    --------->YAB1 ------>ATHB12     ------->MYC3    --------->ANAC58        <---------LBD16      --------->ATHB12   tgattggaaattgttacaacacatgcttgcagagcgcaagaacaagtcaacagaacgtctctccggtaagtttttctttgaatcatggatcattgataca  6719600                                                                                        <-------TEIL                                                  <---------ANAC58                   <---------DEAR3(2)                                                  <---------bZIP60(2)                <---------MYB46(3)                     <-------TEIL                 <---------ANAC58                  <---------DEAR3(1)                     <---------ZAT18              <---------AtLEC2           --------->LBD16                     --------->ZAT18           --------->ANAC46 <---------YAB1   <---------SPL7             ----------->HVH21              <-------TEIL <---------At4g35610--------->HSFB2a(2)           --------->At4g35610       <---------WOX13(1)  ----------->RAV1(2)<---------ANAC46        -         --------->YAB1             <---------AtLEC2    ------>NtERF2       <---------HSFB2a(2)------   <------NtERF2<---------ANAC46    <---------ANAC58--------->ANAC58       <---------LBD16     ------  <-----------HVH21  <---------ZAT14<---------ANAC58--------->ANAC58      --------->MYB52(1)  -------   agcgcgtcgaatcatatgacgggtacacttgagtttttgcttgatatacatggcatggcacctgttttgataaaacttccggatggacggttcacaacct  6719700           <---------ANAC58                                                 --------->At4g35610 -------->ANAC46                                                        <-----------HVH21 ->GAMYB   <---------ANAC58                                --------->ATHB12 <---------At4g35610 --->AtMYB61                                         <----------DOF2--------->ATHB12        <-------- -->MYB46(3)      <---------YAB1             <---------ARR11(3)   <----------DOF2         --------->YAB1   ccacaaaacatggtcgtgttttgatgggttcttcattaagtctccaagatgtgttctttgttgatgggcttcattgtcatctcatttcagtatcacaatt  6719800                                                                                  --------->At4g35610                                                                                  <---------At4g35610                                                                                  --------->ZAT2                                                                                --------->ATERF1(1)                                          <---------ZAT6                        <------NtERF2                              ----------->HVH21                                 <-----------RAV1(2)                           --------->MYB52(1)                                 <---------ANAC46                        --------->At4g35610                               <---------WOX13(1)    <<<<<<<<<<<<<<<<<LFY<---------At4g35610                             --------->ATHB12    <-------- -YAB1       <---------GLK1(1)------->GAMYB                            <---------YAB1     --------->At4g35610   gactagagacagtggatatatgtttcagataactgacaaggtttgtgttattcaagaccgcatcacgaagacgctgattggcgcaggtgaacagcttaat  6719900  Previous    Next  AGI:  At1g19415.1    Description:  transposable element gene. copia-like retrotransposon family, has a 6.1e-43 P-value blast match to gb|AAO73529.1| gag-pol polyprotein (Glycine max) (SIRE1) (Ty1_Copia-family) Range:  from: 6719439    to: 6720645    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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