Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                  --------->At4g35610         ------>MYB46(1)                                        <---------At4g35610         ------>MYB83                                      <------MYB46(1)       <---------MYB111(1)                          <---------At4g35610      --------->ANAC58          <----------DOF2     --------->At4g35610      --------->ANAC58        --------->LBD16       --------->ZAT2   --------->MYB46(3)       <---------LBD16         <---------ZAT2        --------->ANAC58  --------->ANAC58     <---------ANAC58        <-------TEIL<------MYB83   --------->ANAC58  --------->ANAC58     <---------ANAC58       <-----------HVH21--------->MYB52(2)  --------->ANAC46 <---------At4g35610    <---------ANAC46 <---------MYB46(3)          XXXXXXXXXXXXXX   tttcaagcaccaaatcgagtctgatgcttctccggtttatggagacgggttcagagctgggaggttagctgttcacaagtacggtttgcgaaaaacactt  6665800                         --------->LBD16                    --------->ARR14(2)                    <---------ARR14(2)                    <---------GLK1(2)                   <----------TaMYB80                                                  --------->YAB1                 <--------P                                                           <---------YAB1                <---------MYB52(1)                                      <------ZmHOX2a(2)          ----------->HVH21                                            --------->ARR14(2)          --------->WRKY12--------->LBD16                        <---------AHL20(2)   --------->ICU4          --------->WRKY38(1)                              <---------DAG2------>ZmHOX2a(2)        <---------At4g35610                       <---------ARR11(3)   --------->ARR11(3)        --------->At4g35610                       --------->ARR11(3)   <---------ARR14(2)  <---------AHL20(2)   --------->ARR14(2)   <---------LBD16           --------->ARR14(3)   <---------ARR11(3) --------->AHL20(2)   <---------ARR14(2)<---------GLK1(1)            <---------ARR14(3)  <------ZmHOX2a(1)<---------ICU4 XXXXXX>MIR822 ----------->GT1             <----------ID1  <----------DOF2     <--------P<---------YAB1   gagcatatacagatgaccggtagattcccggtttaagaacccaaatggacaaggtcttctactttatttataggatccttggtagattattattatatgc  6665900                                                                                                   <-                                                                                                  ---                                                                                                 <---                                                                                                 <---                                                                                                 ----                                                                                              -------                                        <---------ANAC46                                --------->YAB1        <---------AtMYB61 <---------ETT(2) --------->ZAT14                           --------->WOX13(1)     <----------DOF2 ------->TEIL<---------GLK1(2)       <---------YAB1  ------>ZmHOX2a(1)  ---------   tctaattcttttggtggaaaatgtactctcgaccatattcttatgtgtagtctcattcgatgattctttgtattcctctgttaaaatccatcagaatcag  6666000                                                                       ------>MYB83                                                                  ------>MYB46(1)                                                                  ------>MYB83                                                                ------->GAMYB                                                                <---------MYB59                                                               --------->MYB46(3)                                                              ------>MYB46(1)                                                              --------->MYB52(1)                                                              -------->P                                                              ------>MYB83                                                             --------->MYB55(1) ------TEIL                               --------->MYB52(1) --------->MYB52(1)     <---------TOE2(3) ------>GLK1(2)                           ------>MYB83      --------->AtMYB61     ---------->DOF2 ------ARR14(2)                           ------>MYB46(1)  --------->MYB46(3)    <---------AHL20(2) ------GLK1(2)                          <---------MYB59<---------MYB59 ------>MYB46(1) ----->ARR14(2) <------------CBF        --------->AtMYB61------>MYB83<---------MYB59<---------TOE1(3) -->YAB1      <---------YAB1           --------->MYB46(3)------>MYB46(1)        --------->AHL20(2) >GLK1(2) <----------DOF2     ------------>CBF         --------->AtMYB61   ------------>CBF   <------   attcagtgttttctttgttattgctctccaaattcaatcgaaccaaaccgagccaaaccaaaccaaccgaaccaaattccaatttaaaggtttcttcttt  6666100                     <------NtERF2                    ------>NtERF2                   --------->DEAR3(1)                   ----------->HVH21                  --------->RAP2.3(1)                  --------->ATERF1(1)                                        <----------DOF2                  <------NtERF2  ------------>CBF                      <---------ANAC55(2)                  --------->DEAR3(2)                                   --------->ANAC46                 <---------RAP2.3(1)                                   --------->ANAC55(2)                 ------>NtERF2<------NtERF2        --------->TOE1(3)   --------->ANAC58                 <---------ATERF1(1)               --------->TOE1(2)   --------->ANAC58                --------->DEAR3(1)   <---------ATHB12            ---------->DOF2    --------->PCF5                <---------DEAR3(1) --------->WOX13(1)     ----------------------->TaNAC69(2) ----DOF2     <-----------HVH21 <-----------HVH21  --------->TOE2(3)  <---------LBD16   <---------TOE1(2)   acacactctcactcttcgtcgccgacgtagtcgtcgtcaatcgtcgactaaaaccttagacacattccaaagtacggaactttgaggtcccaagtttaat  6666200                                                          ------->MYC3                                                          ------->MYC2                                                          <-------MYC3                                                          <-------MYC2                                                         --------->ANAC58                                                       <---------ALFIN1                    <---------ZAT14                                                     ------>NtERF2 <---------ANAC58        --------->ZAT14                     =======================RAV      --------->LBD16              <---------ANAC58                     ----------->RAV1(1)             <-----------HVH21        <---------ANAC58                 ------->GAMYB             ------>NtERF2 --------->ANAC58     <---------ANAC58      <                 <---------ETT(1)         --------->DEAR3(1)  <---------MYB46(3)  <---------ANAC58  -               --------->At4g35610        ----------->HVH21<<<<<<<<CAMTA3  <---------MYB52(1)      <-             --------->YAB1       ------>ZmHOX2a(1) --------->ANAC46      --------->At4g35610     <--            <---------ATHB12    ----------->RAV1(2)<---------LBD16 <---------ANAC58 <---------MYB52(1)       --------->TOE2(3)   <---------GLK1(2)      <---------ATERF1(1)     <---------At4g35610   -----   gggttccagcgttaatcatccgacaacaaaattctcctgatgctccgacggtctccggcacgcgttgttgcctatcagttgcttccgtttctctatactc  6666300                                  --------->ZAT2                                  <---------ZAT2           --------->HSFC1(2) <------NtERF2           <---------HSFB2a(1)--------->LBD16           <---------HSFC1(2)--------->DEAR3(1)           --------->HSFB2a(1)------>NtERF2             <---------ARR14(2)        --------->LBD16     <---------LBD16             --------->ARR14(2)       --------->ANAC46   --------->ANAC58        --------->TOE1(2)                         <-------- <---------ANAC58         --------->ANAC46     --------->MYB52(1)                           <-------- <---------ANAC58         --------->ANAC58    <---------ARR14(2)                      --------->TGA1a ---------HSFC1(2)       --------->SPL7       --------->ARR14(2)                      <---------O2 -------->HSFC1(2)    <---------DAG2         <------ZmHOX2a(1)                        --------->O2 --------TOE1(2)    --------->GLK1(2)     <------ZmHOX2a(1)                           <---------TGA1a -------CCA1(2) <---------HSFB2a(2)    <---------HSFB2a(2)                            =============== ---->ANAC46    --------->HSFB2a(2)    --------->HSFB2a(2)                           <---------TOE1(2)   gtagcttctccgaagcctcgagaaccttacgccgcgagcttcgaggaggaaacgggcgaattcgacccgaattactcgagcgggtctcacgtttgctcgt  6666400               <----------DOF2      <---------ARR14(2)     <------MYB83  --------->ANAC55(2)     <------MYB46(1)         --------->ZAT6    --------->MYB111(1)<---------ARR11(3)  <---------At4g35610    <---------------AtSPL8--------->WOX13(1)    ------->TEIL                <---------TOE2(3) -ANAC58    ------->TEIL ------>ZmHOX2a(2) --------->At4g35610     <---------ANAC46            <----- -ANAC58<-------TEIL   --------->ARR11(3)<-----------RAV1(2)     ------>ZmHOX2a(1)          <-------- =========================bZIP_DOF  <---------GLK1(1)           --------->TOE2(2)           <--------   acttggcaggtacgaagctttacatgatctatcactcgatttctcagatgaacttctcaactccatcctgcgtagattgaggcttaacccagaggcatgt  6666500                                     ------>NtERF2                                     --------->LBD16                                    <---------RAP2.6(2)                                 <---------ARR14(2)      <-----------GT1            --------->ARR14(2)   --------->ARR14(2)        ---------->DOF2   <---------ARR14(2)      --------->MYB46(3)                                                       -   <---------ARR11(3)    ----------->RAV1(1)                                                       --   <---------GLK1(2)    <----------ID1                    --------->At5g28300                     ---   --------->ARR11(3) --------->ANAC58                   <---------ZAT6                           --- ----ARR14(2)         --------->ANAC58   --------->ICU4  ----------->GT1                         ---- -ANAC58              --------->ANAC46------>NtERF2 <---------ANAC58                             ---- -ANAC58            ---------->DOF2<---------LBD16  <---------ANAC58    --------->ARR11(3)   <-------   ctggagattttcaatttggcttcaaagcaacaaaagttccggcctgattacaaggcttactgtaaaatggttcacatcttgtccagggctagaaattacc  6666600                                                                                        <-----------GT1                                                                                      --------->HSFB2a(1)                                                                                      --------->HSFC1(2) ------>GAMYB                                                                         <---------HSFB2a(1) ------->MYB46(3)                                                                     <---------HSFC1(2) --->MYB83                                                          <---------SPL7   <---------KAN4(2) --->MYB46(1)              <--------P                               ----------------------->TaNAC69(2) ----->MYB52(1)     --------->ZAT14                             <---------ZAT2   --------->ANAC58 ------->RAV1(1)    --------->ZAT18                <---------MYB52(1)            --------->ANAC58 ----GT1            <---------ZAT14  <---------ATHB12    <---------LBD16         --------->ANAC46   -   aacagacaaaatcgtatttatgtgaactggttgctcttaatcactcgggcttcgttgtctggggagagctcgttcgggttttcaaggaattttccttctc  6666700  Previous    Next  AGI:  At1g19270.1    Description:  ubiquitin interaction motif-containing protein / LIM domain-containing protein. similar to zinc ion binding [Arabidopsis thaliana] (TAIR:AT4G36860.2); similar to unnamed protein product [Vitis vinifera] (GB:CAO61229.1); contains InterPro domain Ubiquitin interacting motif (InterPro:IPR003903); contains InterPro domain Zinc finger, LIM-type; (InterPro:IPR001781) Range:  from: 6662492    to: 6666019    Orientation: Forward Links:  TAIR  MIPS    AGI:  At1g19290.1    Description:  pentatricopeptide (PPR) repeat-containing protein. similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT5G55840.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN66818.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO61227.1); contains InterPro domain Pentatricopeptide repeat (InterPro:IPR002885) Range:  from: 6666240    to: 6668954    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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