Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100          <---------YAB1                                                                          -----      <---------ICU4                                                                            <----     --------->ICU4                                                                      <---------ZAT2    <----------DOF2                                                                      <---------STY1(2) ------>YAB1                                                                     --------------->AGL15 -------ICU4                                                                     <---------------AGL15 ------ATHB12                                                          --------->YAB1    --------->STY1(2) ----->ICU4       <---------YAB1                        --------->ANAC46        ----------------->AGL2 ---->CBF<-----------GT1                    <---------TOE2(3)         <---------YAB1     --------->ZAT2   tgatgtctttattactagttattctagtctctctactaccgtatttaagaattcttacaaacaatgttcttgattatagttttccattactagctggtct  6420700                                                                                                  <--                                                                                                 ----                                                                                          --------->AtLEC2                                                                            ------>ZmHOX2a(2)   <----                                                                           <---------GLK1(1)    <----                                                                           --------->GLK1(1)   <-----                                                                           <------ZmHOX2a(2)   ------                                                                          <---------ARR14(2)   <-----                                                                          --------->ARR14(2)   ------                                                 --------->ARR11(3)       <---------ARR11(3)   ------                                                 <---------ARR11(3)       <---------ARR14(3)   <-----                                                 --------->ARR14(2)       --------->ARR14(3)   <-----                                                 <---------ARR14(2)       --------->ARR11(3)   ------                         <-----------RAV1(1)    <------ZmHOX2a(1)   --------->YAB1      <---------ANAC58                <------------------------ANAC81 ==================================HOX2a_HOX2a  <-----           <---------GLK1(2)        --------->AHL20(2)             <---------AHL20(2)   <---------ANAC58 ---->HSFB2a(2)<----------DOF2      <---------AHL20(2)            --------->AHL20(2)   <-------TEIL -----HSFB2a(2)<------------------------ANAC81  ===================================HOX2a_HOX2a<------   cgaattgtttccaaattctttttttttttgttggatttttaatttctgcaggattttggttttgatcatataataagatctcccatggatgcatgcagat  6420800        <----------DOF2   ---------->DOF2 --------DOF2 -->ZmHOX2a(2) -----RVE1(1) --ZmHOX2a(2) ----ARR14(3) --->ARR14(3) ------ARR10 --->ARR11(3)                                                                               --------- --->AGP1                                                                                  <---------AHL20(2) ----AGP1                                                                                <---------YAB1 ----ARR14(2)                                                                         <---------YAB1 --->ARR14(2)                                                                         --------->ICU4 ----ARR11(3)             <---------AHL20(2)                                       <---------YAB1 ---CCA1(2)          <---------AHL20(2)      <----------ID1                      ----------->GT1   cttttcaaagcttttcatcttagtttatttttttttggtttagaaatagaacaagttaagttaagttaagttaagttgttaagttgttattattaaaagt  6420900            <---------AHL20(2)                                    <-----------GT1      <---------AHL20(2)                                     <---------DAG2                   <------    <---------YAB1                       <-------TEIL   <---------ANAC58                   <---------AHL20(1)  <---------AHL20(2)                  ----------->GT1   <---------ANAC58                   --------->AHL20(1)  --------->AHL20(2)                 --------->DAG2<---------ARR14(2)                     --------->AHL20(2)  --------->ATHB51           <---------ZAT14     ------->TEIL<----------DOF2        ----------->GT1 - ->DOF2     --------->AHL20(2)      ---------->DOF2--------->ARR14(2)   --------->YAB1--------->AHL20(2)   agaattatttttttttaatttagccaaaaactaaactgaaaagtacatatgaatatttgcttactttttttctattagaaaaattgaagtaaatatataa  6421000                          <---------YAB1                      --------->ANAC58                      --------->ANAC58               <---------O2               <---------ZAT2               --------->ZAT2                <-----------GT1                                ---------  ----------->GT1   <--------P         <-------TEIL                          --------->AHL20(2) --------->DAG2--------->O2           <-----------GT1                        <---------AHL20(2) ---AHL20(2)  ------>NtERF2     <---------TOE2(3)                     ----------->GT1       <-------- --------->DOF2----------->RAV1(2) <---------KAN4(2)           ----------->GT1    ---------->DOF2   acaaaagtgaaaatgccacctggtaagtaagattaagaatatacattttactaaaaattaagaagttgttaaatgtaaaataaatatagcgaagaattct  6421100            <---------ANAC46            <---------ANAC58                                              <----------DOF2        --------------------->WRI1                                       <---------DAG2  --------->ZAT2                                                   <---------ARR14(2)  --------->At4g35610                                              --------->ARR14(2)  <---------ZAT2   ----------->HVH21        >>>>>>>>>TBF1         <------ZmHOX2a(1)  <---------At4g35610                    >>>>>>>>>TBF1         --------->DAG2 >GLK1(1)   <---------ANAC58      <------ZmHOX2a(1)           ---------->DOF2 -GLK1(1)*TSS      <---------ETT(1)   >>>>>>>>>TBF1<---------WOX13(1) <-----------GT1        --------   ggtgagctgaatttgtgtgttccgaccgaaaaatcaggaagaagaagaagaagattgacaaacaaaaaggattcacctttagtgactgagtgagagaaag  6421200                                                                                                   --                                                                      <-------GAMYB                --                                                                     <---------MYB46(3)       <------                                                                   --------->LBD16            -------                                                                  <---------ANAC46            -------                                                         --------->ARR14(2)            <---------HSFB2a(2)                              <----------DOF2            <---------ARR14(2)            --------->HSFB2a(2)                   --------->DAG2                       <------ZmHOX2a(1)      --------->TOE1(2)   --     ----------->GT1    --------->ALFIN1         --------->ANAC46 <---------ANAC58     <-----------RAV1(2) -->DOF2          ---------->DOF2        <------ZmHOX2a(1)        <---------ANAC58 <------ZmHOX2a(1)   agattgaaggaaaaaaaaaaaaaagggtgaagctttggagagaggataaccacgtagaggattctaatccgtggttgcaaacgaaggacccagaagtgaa  6421300                                                            --------->WRKY38(1)                                                   <---------AHL20(1)                                                   --------->AHL20(2)                                                  --------->AHL20(2)                                                --------->TOE2(3)                                               <---------ICU4                                              <---------YAB1--------->WRKY45 --------->ARR14(2)                           --------->ICU4----------->HVH21 <---------ARR14(2)                           <---------ATHB12 ------->ANAC58                             --------->YAB1  --------->WRKY12              <---------HSFB2a(2) ------->ANAC46                         ---------->ID1    <----------DOF2                 --------->HSFC1(1) ---ZAT18                           --------------------->WRI1                            --------->HSFB2a(2) -->ZAT18                           <----------DOF2<---------AHL20(2)                    <---------LBD16 -->ZAT14                       <----------DOF2--------->ATHB12               <----------DOF2<------- ------->ANAC58              <---------ARR11(3)<--------HAHB4     ---------->DOF2      --------->GLK1(2)   cacgatactctccctcccttcccttgttcaatttctttctttgttctcatcattaaatttctttgacccaaagtttcaatctttttcagtttctggaatc  6421400                                                     <----------DOF2                     <---------At4g35610   --------------------->WRI1               ------>NtERF2                         <---------At5g28300  <---------ANAC58          <---------TOE2(3)  <----------DOF2                   <-----------GT1  <---------ANAC58         --------->MYB52(1) <---------DAG2<------MYB83  ----------->GT1--------->At4g35610 --GLK1(2)   <---------ATHB12               --------->LBD16 <------MYB46(1)      --------->MYB52(1) <   tcttgcttcgatcgaatcactctcatgtctaacgaagactctcttccgcctttcactttgtttggtttggatgatgtcgaaaattacggtctggtgagtt  6421500                                                                   --------->ARR11(3)                                                                   <---------ARR11(3)                                                                 <---------TOE2(3)   <---------AHL20(2)                   --------->ATHB12          >>>>>>>ZML2<---------MYB46(3)          <---------AHL20(2)        <-----------GT1                ------->TEIL <---------YAB1 <---------GLK1(2)--------->AHL20(2) ----------DOF2   <---------YAB1      <---------AtLEC2<---------MYB52(1)  <---------MYB52(1)     <---   ctctttggatttacttcgttttgatttgaagagtagcaatgcatgttctagtttccgattgttgatttagattttcgttagggtgatttatttgtctcag  6421600  Previous    Next  AGI:  At1g18660.1    Description:  zinc finger (C3HC4-type RING finger) family protein. similar to ATP-dependent protease La (LON) domain-containing protein [Arabidopsis thaliana] (TAIR:AT1G75460.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO64510.1); contains InterPro domain Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990); contains InterPro domain Peptidase S16, lon N-terminal; (InterPro:IPR003111); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) Range:  from: 6421109    to: 6425872    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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