Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                           --------->ANAC46                                                         --------->MYB46(3)                                                       ----------->RAV1(1)           <----------ID1                            <---------At4g35610 --------->ANAC58     <---------At5g28300                   --------->MYB52(1)  --------->At4g35610    --------->YAB1                  <-------TEIL     --------->At4g35610 --------->ANAC58 --------->WOX13(1)    <-----------GT1   <---------ARR11(3)  ------->GAMYB              <-------TEIL   tgtcaattacagtaagacaagggaattacaaaactagatgcaagataactgatgcagcaacaacgagctcaattcaagacataaatggcatacatgacta  6068700                                                                                          --------->ANAC46                                                ------>MYB46(1)                           --------->ANAC58                                                ------>MYB83                              --------->ANAC58                                              --------->TOE1(2)                      --------->ANAC58                                   --------->ANAC46                                  <------NtERF2                         <---------MYB52(1)   --------->TOE2(2)                      --------->ANAC58                        <-------GAMYB         --------->AtMYB61        ---------->DOF2--------->AtMYB61                 --------->ARR14(2)--------->ANAC58              --------->TOE2(3)  ----------->RAV1(1)            ------->TEIL<---------At4g35610<---------ALFIN1     --------->YAB1  --------->DAG2    ---           <-----------GT1         --------->ANAC58          ------>ZmHOX2a(1) ---------->DOF2    ---    --------->YAB1----------->RAV1(2)<---------GLK1(2)      <---------MYB59   ---------->DOF2   -----   agacgatgaaaatgaaccatacctgcagttgtttcccaagaaactccacctacgaacagtttcctaacataaacaaagacaaaaggcaccacaagaaacc  6068800                      <---------ARR14(2)                      --------->ARR14(2)                     <---------At4g35610                                                       <-----                     <---------ZAT2                                                          --------          --------->YAB1                                                                    <--------        --------->AHL20(1)                                                                  <--------        <---------ARR11(3)--------->LBD16                                                  --------->TOE1(2)        --------->ARR11(3)--------->At4g35610                                            ------->TEIL        <---------AHL20(1)<---------At4g35610                                          --------->AtMYB61   <---------ATHB12  --------->ZAT2                                   ---------->DOF2 --------->ANAC58 --->MYB83--------->TOE2(3)                                --------->AtLEC2           --------->ANAC46 --->MYB46(1)        --------->At4g35610         ----------->GT1    --------->ARR11(3)<---------MYB52(2) ---->AtMYB61   <-----------GT1                ---------->DOF2  ---------->DOF2       --------->ANAC58   tccccatcaatatcttaataaccagctccgctgagaagagattaatatcaaaagtaaatccatacaaaaagataaagcctaagaaaccacgaacccagga  6068900                                                                              <---------MYB52(1)                                                                              --------->ARR14(2)                                                                         --------->AtMYB61                                                                         <---------ALFIN1                                           ----------->RAV1(2)           --------->DEAR3(1)                                           <---------At4g35610          --------->MYB46(3)                                           --------->At4g35610        <---------ALFIN1                                ------->GAMYB                         --------->REM1(1)                               --------->ANAC46                      --------->At4g35610        <----                              --------->At4g35610                    <---------ZAT14            -----                             --------->MYB52(1)                      --------->ZAT18        ---------                            <---------WRKY45                         <------NtERF2    <-----------HVH21 -ZmHOX2a(1)                <---------WRKY38(1)                     <---------ATERF1(1)   <---------YAB1 ->LBD16                    <---------WRKY12                      --------->At4g35610--------->LBD16 -LBD16                 <---------AtMYB61--------->REM1(1)      --------->MYB46(3) <---------LBD16 ---RAV1(2)  >>>>>>>>>TBF1 --------->WRKY18(1)                --------->MYB52(1)  ------>ZmHOX2a(1)   gaagacatggacgaagaagaatggcgatggtcaacggaatgcttcatctgaatcccaccagtatcaacggctgcaccaccgttcctccggtcatcaaagg  6069000                                                                        ------>ZmHOX2a(2)                                                                      <---------ARR14(2)           <-            <-----------------AG            --------->ICU4            --------->ARR14(2)           --            ----------------->AG            <---------YAB1            <---------ARR11(3)           --          <---------ARR14(2)           <---------ANAC58          --------->MYB46(3)                <-          --------->ARR14(2)           <---------ANAC58     <---------ICU4                         -- <---------ALFIN1                      <---------ANAC55(2)  --------->YAB1                       <--- -----ARR11(3)                         --------->ANAC55(2) --------->ICU4       <---------YAB1  ----- ---->ARR11(3)     <---------TOE2(3)  ------->TEIL         <---------YAB1     --------->YAB1    <---- ->DOF2   --------->GLK1(2)      <---------ANAC46        --------->YAB1<------ZmHOX2a(2)   <------ZmHOX2a(2)   tctccacttcaaaatccgattgtggtaattgttcgtcgtgtacgtgatgatggtaagagtcatcataaccacgatctgagttataatccatcgatcactg  6069100 --------ZAT2 ------->At4g35610 ------->ZAT2                   <---------MYB52(1)                                         <---------ANAC58 --------At4g35610         <-----------GT1                                                 <---------ANAC55(2) --------->RAV1(2)   <---------AHL20(2)                                       ------------>CBF --------RAV1(2)     --------->AHL20(2)    <---------YAB1             <---------AHL20(2)   <---------ANAC58 ---->ZAT14         --------->AHL20(2)   --------->YAB1            ------->TEIL      <---------YAB1-- -----ZAT14       <----------DOF2       <---------YAB1 --------->TOE2(3)    <-----------GT1--------->ANAC55(2)   cagctgagtcaaaacaaaaccttttaatttctccgtctgtctatgatgaaaacccaaacttaaaaaatgaattttttttctccaatttcgattacttgat  6069200                                                                                        <-----------RAV1(2)                                                                                     --------->ZAT2                                                                                     --------->At4g35610                                                                                     <---------ZAT2                                                                            --------->ANAC58                              <---------CCA1(2)                           --------->MYB52(1)                             <---------------AGL15           <---------YAB1 --------->ANAC58                    --------->YAB1                     ------------>CBF  --------->ARR14(2)         --------->bZIP60(1)<---------ANAC58           --------->MYB46(3)<---------ARR14(2)         <---------bZIP60(1)<---------ANAC58      --------->TOE1(3)<-----------------------TaNAC69(2) -------->DOF2 <---------ATHB12            ---------->DOF2   <---------TOE2(3)     ------->GAMYB    <   tcaaagttatgacatcaaacattcaaaatttcttatcttggaagagaaagaaccctaaccaatatggttgaagtggaaacggcaacgagctcaggcgaga  6069300                                                                                  <---------ANAC46                                                                                 --------->RAP2.3(1)                                                                                 <------NtERF2                                                                                 --------->ATERF1(1)                                                                                <---------ATERF1(1)                                                                                ------>NtERF2                                                                               <---------DEAR3(1)                                                                               --------->DEAR3(1)                                                                              --------->ATERF1(1)                                                                              <---------ABI4(2)                                                                              --------->RAP2.3(1)                                                                             <---------ATERF1(1)                                                                             <---------DEAR4(2)                                                                             <---------RAP2.3(1)                                                                       --------->ANAC46                                                                    --------->ARR14(2)                                                                    <---------ARR14(2)                                                                   <---------HSFB2a(1)                                                                   <---------KAN4(1)                                                                   --------->HSFB2a(1)               --------->ANAC58                                    <----------TaMYB80             <--               --------->ANAC58                                    <---------GLK1(1)             <---        --------->ZAT14                                            --------->GLK1(1)     <-----------       <-----------HVH21                --------->ARR14(1)         --------->KAN4(1)    <---------AHL20(2)    --------->ZAT6                     --------->ARR11(1)         <---------KAN4(2)    --------->ICU4   <-----------------AGL1             --------->ATHB12            ---------->TaMYB80  <-----------TBP  <-----------GT1                     -------->HAHB4         --------->At4g35610<---------RAP2.3(1)<- <-----------GT1 --------->ZAT14     <---------ATHB12     <---------YAB1  --------->ARR14(2)     <--- ---------AHL20(2)      <---------AHL20(2) <---------ANAC46--------->YAB1 --------->MYB52(1)     <---   attttaacacttcaggcactgaagaattttttgaaacaaatgattcggtgttatcaacttatcatcggaatatccgaaacggcgccgtatttattgtagt  6069400                                                         <---------ANAC46    <------MYB83           <----------DOF2               <---------ANAC58    <------MYB46(1)       <---------ANAC58               <---------ANAC58    <---------MYB46(3)    <---------ANAC58        <---------TOE2(3)  <---------MYB52(1)   ---------->ID1         <------ZmHOX2a(2) -------DOF5.7(2)    <-----------RAV1(1)     <---------ARR11(3) ------WRKY12 <---------DAG2                 --------->ARR11(3) -CBF --------->WRKY18(1) <---------ANAC46  --------->GLK1(1)                                   <---- --------TOE2(3)     ==============================RAV <---------WRKY18(1) <-----------GT1 <---------AHL20(2) ------WRKY38(1)   <----------DOF2        <------ZmHOX2a(1)            <----------DOF2     --------->AHL20(2) ------WRKY45 <----------DOF2          <-----------RAV1(2)       ----------->HVH21        --------->AHL20(2)   caacgttggtcaaacacttttctttgttgcttttgtcaacatcaggagatcaaaggttgacttgtgtttgacacttttaacttgctctcatataaaatta  6069500                                                                                            <--------                                                                                        <---------GLK1(2)                                                                                       --------->HSFC1(2)                                                                                       <---------HSFC1(2)                                                                                      ----------->ARR10         ----------->HVH21                                                        --------->At4g35610    <---------YAB1                                                                <---------At4g35610  --------->YAB1      --------->ICU4                                          <----------DOF2    ---- --------->ICU4     ---------->DOF2        ------->GAMYB                   <---------ARR11(3)    <--- -------GT1      ----------->GT1        ----------->RAV1(1)                --------->ARR11(3)<-------   acaattatcaattgacatgttgtaaagatgaaatttttcatacaacagcaaaaaaaaacacattttcacattgaacaaatctttagctaagcttctcggg  6069600  Previous    Next  AGI:  At1g17640.1    Description:  RNA recognition motif (RRM)-containing protein. similar to RNA recognition motif (RRM)-containing protein [Arabidopsis thaliana] (TAIR:AT3G13224.2); similar to unnamed protein product [Vitis vinifera] (GB:CAO45715.1); contains InterPro domain RNA recognition motif, RNP-1; (InterPro:IPR000504); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677) Range:  from: 6067387    to: 6069091    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At1g17650.1    Description:  phosphogluconate dehydrogenase (decarboxylating). similar to ATGHBDH/GHBDH, 3-hydroxybutyrate dehydrogenase/ phosphogluconate dehydrogenase (decarboxylating) [Arabidopsis thaliana] (TAIR:AT3G25530.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO45714.1); contains InterPro domain 3-hydroxyacid dehydrogenase/reductase (InterPro:IPR015815); contains InterPro domain NAD(P)-binding; (InterPro:IPR016040); contains InterPro domain Dehydrogenase, multihelical; (InterPro:IPR013328); contains InterPro domain 6-phosphogluconate dehydrogenase, C-terminal-like; (InterPro:IPR008927); contains InterPro domain 6-phosphogluconate dehydrogenase, Range:  from: 6069470    to: 6072005    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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