Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                   --------->ANAC46                                                                 --------->ANAC58                                                                 --------->ANAC58     --------->At4g35610                                                                 --------->AtLEC2     <---------At4g35610                                                         <------MYB46(1)         <---------At4g35610                      --------->ZAT18                   <---------AtMYB61       ------->TEIL                   --------->At4g35610    <-----------GT1<------MYB83  --------->TOE1(2)                  <---------ARR11(3) <----------DOF2    <---------TOE1(2)    <---------REM1(1) -----REM1(1) --------->YAB1        <---------ANAC58   <---------MYB52(1) <---------ATHB12         <- --MYB52(1)  <-------TEIL           <---------ANAC58 <---------MYB46(3)--------->TOE2(2)    <--------   gtagcattcttgagattcattatctgcaccatggtgatgcttttgtactacctattcgttggtcttcatgcaacctatgatgtagctcatcagcctttgg  5853700                                                        ----------->GT1                                                        <------MYB46(1)                                                        <------MYB83                                                       --------->MYB46(2)                                             --------->ZAT14                                             <---------ZAT14                                           --------->ANAC46                                    --------->YAB1     --------->MYB59    ---------->DOF2                 ------>ZmHOX2a(2) <---------MYB55(1) --------->ANAC58             --------->GLK1(2)  --------------->AGL15 --------->ANAC58        ---------->DOF2 --------->ZAT6<---------MYB46(3) -----ZmHOX2a(1)       --------->CCA1(2) <---------ALFIN1      ----------->GT1 --DOF2             ----------->GT1 ----------->GT1  <---------MYB52(1)     <---------MYB52(1)   aggaagcaaagtttgagggagagagataaaagaatcgatcgtaacacttcactacgtttggtaaattgtataaattcccttgttttctgatgtgatttca  5853800                                  ------>ZmHOX2a(2)                      --------->YAB1                      <--------ATHB1                     <---------ATHB51             --------------->AtSPL8       <---------ANAC58             <---------------AtSPL8       <---------ANAC58          --------->AHL20(2)    --------->ARR11(3)                                                 <-          <---------AHL20(2)    <---------ARR11(3)       <----------DOF2             <---------AHL20(2)         --------->YAB1 --------->ZAT6    <---------ANAC46        <-----------GT1    <-----------GT1<   atattcttctattaaaatgtacaataatactatcgatcttgttttcgtgttttctcattcttttcatttttcaatgttgaaacttattaacttgttgaac  5853900                                                                                             --------                                                                                            <--------                                                                             <---------At4g35610  ---                                                                       <---------AHL20(2) <---------ICU4                             <---------YAB1                        <----------DOF2       <---------YAB1           <-----------GT1 <---------AHL20(2)     ----------------------->TaNAC69(2)     --------->ICU4 ----------RAV1(1)        --------->AHL20(2) --------->DAG2       <---------DAG2      <---------YAB1 -------GAMYB <---------CCA1(2)              <---------TOE2(3) <---------ALFIN1   <----------DOF2 <--   tctgttgtatttgtttctatcttggaaatttaaaattggagttgaataaggtgttctcagttctcacacctttttatttagctactttgtgattattata  5854000                   ----------->HVH21                  <---------MYB52(1)    <---------MYB52(1)              --------->MYB52(1)      --------->LBD16           <---------ZAT2       --------->ANAC58           --------->At4g35610  --------->ANAC46 --------->YAB1   <-----------HVH21 <---------LBD16      --------->AHL20(2) ->YAB1    --------->ZAT2       --------->ANAC58       <------------CBF       --------->ANAC58 -YAB1     <---------At4g35610  ----------->HVH21--------->ANAC58             --------->ANAC58     <- ------>TOE2(3)  --------->ANAC46<---------ALFIN1--------->ANAC58    --------->YAB1              <--- --------DOF2 -------->P     --------->ZAT18     --------->ANAC46   <---------YAB1    ---------->DOF2   ctttaatgacccgagctaccggtaacccgaatgcacgacccggttaacttcacccaaaattgaatacaacatgataactcaagcccaaaaaagcccattt  5854100                 <---------MYB46(3)                                                         ------>ZmHOX2a(1)                --------->ALFIN1                                                      <---------HSFC1(2)         ---------->DOF2                                                              --------->HSFB2a(1)       <---------YAB1                     <------ZmHOX2a(1)                           --------->HSFC1(2)       ----------->TBP       --------->CCA1(2)                             --------->YAB1  --------->TOE2(3)   <-----------TBP          <---------ARR14(2)                            <---------YAB1<-----------GT1 -----------MYB.PH3(1)      --------->ARR14(2)      ----------->GT1----------->GT1    <---------HSFB2a(1) --------GT1 <---------DEAR3(1)          *TSS --------->GLK1(2)---------->DOF2  <----------ID1     --   aaccgatttataaaagcggtgcttcagacagatatgtgttataaggagaagccgaggttaaaatccaaagcgtaaaatcatagcgagaaatttccttatt  5854200                                                              --------->ANAC58                                                              --------->ANAC58                                                            --------->MYB52(1)                      <                                                    <---------O2                           --------->LBD16                                                   <------NtERF2                          --------->RAP2.6(2)                                                  ------>NtERF2                           --------->DEAR3(1)                                                  ----------->RAV1(1)                    <---------LBD16                        --------->GLK1(2)      --------->ANAC46                         --------->LBD16                       <---------GLK1(2)     =================RAV  <------MYB46(1)      ------>NtERF2                    >>>>>>>>>TBF1            <-----------RAV1(2)   <---------HSFB2a(1) --------->ANAC46        <---------At4g35610            >>>>>>>>>TBF1<---------TGA1a<---------HSFC1(2) <---------LBD16        --------->At4g35610        <------ZmHOX2a(1)--------->O2   --------->HSFB2a(1)--------->MYB46(3) ---->ZmHOX2a(1) >>>>>>>>>TBF1  <------ZmHOX2a(1)----------->HVH21 <------MYB83     <-----------GT1<-   cctgtgattttgctgagaagaagaagaatctcgaggaggaagaagaaacaggcgacatgggagaacggaaggtgctaaacaagtattatccgccggactt  5854300                              <------NtERF2                           --------->At4g35610                          ------>NtERF2                          <---------ATERF1(1)                          <---------SPL7                          <---------RAP2.3(1)                         --------->ATERF1(2)                         <---------RAP2.3(2)                         <---------DEAR3(1)                         <---------ATERF1(2)                         --------->DEAR3(1)                        --------->ATERF1(1)                       <---------RAP2.3(1)                       <---------ATERF1(1)                       --------->LBD16                 <---------TOE1(2)                       ------>NtERF2                   <---------TOE2(2)                     <-------                      <---------DEAR3(1)            <---------ANAC46                         --------                     <------NtERF2                  <---------ANAC58                       --------->LBD16                     --------->ATERF1(1)           <-------TEIL                          <---------LBD16                --------->MYB46(3)             <---------TOE2(3)                    --------->ARR14(2)         <---------HSFC1(2)<------NtERF2    <------ZmHOX2a(2)                      <---------SPL7   -         --------->HSFC1(2)------>NtERF2   --------->ARR11(3)         <---------ANAC58 --------->TOE1(2)   ------>ZmHOX2a(1) <---------LBD16      --------->At4g35610         <---------ANAC58----------->RAV1(2)  --------->TOE1(2) <---------ATERF1(1)--------->At4g35610   <---------ANAC58--------->At4g35610    <  --------->TOE2(2) ------>NtERF2 <---------ARR14(2)<---------ANAC58<---------ATHB12<---------ARR14(2) ------ZmHOX2a(2)  --------->ARR14(2)  <---------At4g35610   <---------ANAC58<---------At4g35610   <- --------ARR14(2)  <---------ARR14(2) ----------->RAV1(1)  <---------YAB1<-----------HVH21<---------ANAC46   cgatcctgcgaagcttcaacggctccggcggccgaagaaccagcagatcaaggttcgtatgatgcttccaatgagtgtccgatgcggtacctgcggaaac  5854400                                        --------->TGA2(2)                                       <-----------HVH21                                       <-----------TGA1                                      --------->ANAC46                                      --------->TGA2(1)                                      <---------TGA2(1)                                      --------->ANAC58                                      <---------bZIP60(1)                                      --------->bZIP60(2)                                      --------->bZIP60(1)                                       -----                                      --------->ANAC58                                         ------                                      --------->O2                                      <---------AHL20(2)                                      <---------O2                               ----------->GT1-----    <---------REM1(2)                <-----------STF1                            <---------ZAT6------ --ARR14(2)                   ---------->DOF2                               --------->YAB1     <----- ->ARR14(2)                 --------->LBD16    <---------ANAC58        <------MYB83    <---------AHL20(2) -------->ARR11(3)         --------->ANAC46    <---------ANAC46        <------MYB46(1) --------->AHL20(2) ---------ARR11(3)         --------->LBD16     <---------ANAC58       --------->MYB59  <---------AHL20(1) --------CCA1(2)          <---------LBD16--------->ATHB12             <---------AtMYB61--------->AHL20(1)   tatatctacaagggaaccaagttcaattcccgtaaagaagacgtcattggcgaggtaattgaatcaattggtttggtttcatagtgtaatttatttcctc  5854500        <---------ANAC58        <---------ANAC46        --------->ANAC55(2)        <---------ANAC55(2)        <---------ANAC58   <----------DOF2  <---------ANAC58                                                          <---------TOE2(3)  <---------ANAC58                                                    <---------AHL20(2) ---->TOE2(1)                                                         --------->AHL20(2) >ZmHOX2a(1)        ------->TEIL                                      --------->AHL20(1) ---->TOE1(1)   --------------->AtSPL8                               --------->AHL20(2) --->LBD16 <---------ARR14(2)                  <---------GLK1(2)     <---------AHL20(2) ----LBD16 --------->ARR14(2)       <---------ZAT6     <------ZmHOX2a(1)    <---------TOE1(3)--------   ggatgcttttgcgtaatctctgtacctcttagttgatagtgttgatgcagattattaggagtgtcttctaattttattagggtttcagttttcgataata  5854600  Previous    Next  AGI:  At1g17120.1    Description:  CAT8 (CATIONIC AMINO ACID TRANSPORTER 8); cationic amino acid transmembrane transporter. similar to CAT5 (CATIONIC AMINO ACID TRANSPORTER 5), cationic amino acid transmembrane transporter [Arabidopsis thaliana] (TAIR:AT2G34960.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO41927.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO42080.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN78727.1); contains InterPro domain Cationic amino acid transporter (InterPro:IPR015606); contains InterPro domain Amino acid permease-associated region; (InterPro:IPR004841); contains InterPro domain Amino acid/polyamine tran Range:  from: 5851946    to: 5853948    Orientation: Forward Links:  TAIR  MIPS    AGI:  At1g17130.1    Description:  cell cycle control protein-related. similar to cell cycle control protein-related [Arabidopsis thaliana] (TAIR:AT2G32050.1); similar to unknown [Populus trichocarpa] (GB:ABK95462.1); contains InterPro domain Protein of unknown function DUF572 (InterPro:IPR007590) Range:  from: 5854141    to: 5856690    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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