Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                      <                                                                                                <----                                                                                     --------->RVE1(1)              <----------DOF2                                           --------->YAB1--------->ARR11(3)           --------->GLK1(2)                --------->YAB1              <---------ICU4<---------ARR11(3)   --------->ICU4                  <-----------GT1<------ZmHOX2a(1)  --------->YAB1  --------->CCA1(1) --------->MYB52(1)  ----------->GT1     --------->TOE2(3)    <------ZmHOX2a(1)  --------->AHL20(2) -   aagtaacgatgagcatctttgggagattaaaacaatttgactaccttcataaggagattgagtaggaccaagaatcataacattgaaatatctcatattt  5777900                           <---------At4g35610                           --------->ZAT2                          <---------ARR14(2)                                             ------>MYB83                         <------ZmHOX2a(1)                                              --------->MYB52(1)                       <---------TOE1(2)                                     <---------MYB111(2)                       --------->LBD16                      --------->AHL20(2)   --------->AtMYB61              ------->TEIL--------->ARR14(2)                <---------AHL20(2) -------->P------>MYB46(1)           --------->ANAC58--------->At4g35610             --------->AHL20(2)<---------MYB111(1)          --------------->AtSPL3                           --------->YAB1   <---------At4g35610  ----------->HVH21   <-----------RAV1(2)     <-----------GT1               <---------ZAT2 ---------At4g35610   <---------HSFB2a(2)   --------->CCA1(2)               --------->ZAT2 -------GT1--------->ANAC58<---------ZAT2  <---------ARR11(3)               --------->At4g35610   <-- ----->ZmHOX2a(1)     <---------LBD16      --------->ARR11(3)              --------->ANAC46       ---   tcctctgatggagacgcacttatcccaggagctgcaatttcgaaagatatacaacttagaattaaaatcaatagttccagctaccaaaaccaactgtttg  5778000                                                                                 <-----------HVH21                                                               --------->At4g35610     <------ZmHOX2a(2)                                                        --------->ZAT18         ------>ZmHOX2a(1)                                                        <-------TEIL            ===================== -------At4g35610             ------>ZmHOX2a(2)     <---------TOE1(2)           ==============HOX2a_HOX2a ------>At4g35610--------->GLK1(1)              <-----------GT1<---------At4g35610 --------->YAB1   agctaaaatcaactgtgagaaatcaacaaggatcgaatgaagtgatgaaattaccaggttcactaagcagacgttgagtttcctatcagatcgaagaaca  5778100                                          --------->ANAC58          --------->At4g35610                                          --------->ANAC46          ----------->RAV1(2)          <------ZmHOX2a(2)               --------->ANAC58          <---------ZAT2         --------->AGP1             ------>ZmHOX2a(2)               --------->ZAT2      <---------MYB46(3)         --------->ARR11(3)        --------------->AtSPL8           <---------At4g35610<---------DEAR3(1)        --------->At4g35610        <---------------AtSPL8       --------->ARR14(2)    <---------MYB52(1)        <---------At4g35610        <------ZmHOX2a(2)--------->HSFB2a(1)        <---------AHL20(2) <--    <-----------HVH21              --------------->AtSPL3       <---------ARR14(2)   <-----------HVH21  --------->DAG2                  --------->ARR11(3)<---------HSFB2a(1)  <---------ANAC46 --------->ARR14(2) ---------->DOF2----------->TGA1  <---------ARR11(3)--------->HSFC1(2)   ----------->GT1<---------DEAR3(2) ================HOX2a_HOX2a--------->CCA1(2)       <---------HSFC1(2)  <---------TOE2(3) <---------ARR14(2)   aaaaaaagtcagatcaagatgacgaagatgatataagatcgtacaagctatcgaaaattcttcccagttctgctgaggtatataatccgtcggttccttc  5778200                                                      ======================HOX2a_HOX2a                                                      <------ZmHOX2a(1)                                                 ========================HOX2a_HOX2a                                                 ------>ZmHOX2a(2)                                                <------ZmHOX2a(2)                                                =========================HOX2a_HOX2a                                                =============HOX2a_HOX2a                                               --------->ARR14(2)                                               <---------ARR14(2)                                            --------->ANAC58                                            <---------ANAC55(2)                                            --------->ANAC58                                            --------->ANAC55(1)                                            --------->ANAC55(2)                                 <----                                           <---------LBD16                       --------->TOE2(3)                                           <-------TEIL                          --------->TOE1(3)                                          --------->ARR14(1)                   -------->P     <------                                          --------->CCA1(2)                 <---------MYB52(2)<------               --------->GLK1(1)         <---------ARR14(2)          ------>ZmHOX2a(2)        <------   --------->GLK1(1)         ------->TEIL--------->ARR14(2)        <---------ARR14(2)       <--------   <---------GLK1(1)--------->LBD16      --------->ARR11(1)        --------->ARR14(2)  --------->ATHB12 -------LBD16  <---------GLK1(1)       ----------->ARR10*TSS      <------ZmHOX2a(1)   <---------YAB1   ttcggatttcagattagaattccccaaaatgaaactgaggggagatacggatcggaggatgctacagaggatcggaaaactaaccttgatgattcgtcgg  5778300                                                                                -------->P   --------                            --------->MYB52(1)                               --------->At4g35610        <------------CBF--------->ANAC46                                     <---------At4g35610<----      <---------YAB1    --------->ANAC58                                     --------->HSFB2a(1)----- --NtERF2               --------->ANAC58 <-----------HVH21                   <---------HSFC1(2)<----- ---ANAC46           <---------SPL7     ------>ZmHOX2a(2)                    --------->ZAT2 <-------- ---DEAR3(1)     <---------ICU4  <---------GLK1(2)                      <---------------------WRI1 -- ---LBD16        --------->ATHB51--------->ARR14(2)     <---------TOE1(3)    --------->HSFC1(2)------ ---HVH21       --------->ICU4   <---------ARR14(2)     <---------TOE2(3)   ------->TEIL ----------->GT1   ggaagattactattggccattatcgcacgctatcggattcgatcgtcacagagaagttagggtttttgagagagaacgaagctaccaaaggctgataata  5778400                                                                          --------->AHL20(1)                                                                          <---------AHL20(1)                                                                    --------->LBD16                                                                   --------->ANAC55(2)     --------->ANAC58                                              --------->ANAC46     --------->ANAC58                                              <---------ANAC55(2)    --------->ZAT18                                            <----------DOF2    <---------ZAT14                                         ---------->ID1--------->AHL20(2)    <---------ZAT18                         --------->AHL20(2) <---------DAG2 ->YAB1                                ------>ZmHOX2a(2)    <-----------GT1 -----ICU4                       <----------DOF2      <----------DOF2    --------->AHL20(2) --->HAHB4               <---------ANAC58   <---------AHL20(2)--------->TOE2(3) ----YAB1                <---------ANAC58<----------DOF2    <-----------------AGL1 -YAB1                  --------------->AtSPL8    <----------DOF2 <---------LBD16        <---------YAB1 ------------------->WRI1<---------ANAC46------>ZmHOX2a(1) <-----------GT1<---------AHL20(2) -------- --->ICU4   ---------->ID1  <---------ZAT18--------->AHL20(2)----------------->AGL1 <----------DOF2--   atcgagtacgcttcgtcgtctctagtttcgtgcccctttgatccttttaattctttctttttttcctttacggaaataaattgatgcttttatgctagta  5778500           <---------ANAC55(2)                                                              ---------      <---------ICU4                                                                        <--------     <---------YAB1                                     <---------ARR11(3)               --------->YAB1     <---------AHL20(2)                                 --------->ARR11(3)       --------->AHL20(2)     --------->AHL20(2)                           <---------HSFB2a(2)           <---------AHL20(2)  <---------AHL20(1)      <------ZmHOX2a(1)       --------->HSFB2a(2)           --------->AHL20(2)  --------->AHL20(1)    --------->ANAC58   --------->AHL20(2)                   <---------AHL20(1) --------->AHL20(2)     --------->ANAC58  --------->AHL20(2)                <---------AHL20(2) <----- --->GT1 <---------AHL20(2)         ----------->GT1 <---------MYB52(1)--------->YAB1   <---------TOE2(3) ------->AHL20(2)   <---------ANAC55(2)   <---------AHL20(2)         <-------TEIL<---------AHL20(2)   aaaatatataattacatgaaatatgtaaggaatacatttagtaaataattttctgtaagttctcttccatattcatattcaatttttttaagaataattt  5778600                       --------->ATHB12                                          <---------AHL20(2)                      <---------YAB1                                             --------->ATHB12                      --------->ICU4                  --------------->AGL15     --------->AHL20(2)                    --------->YAB1               <----------DOF2        --------->ANAC58 >ATHB51         <-----------GT1                <---------ICU4          --------->ANAC58 -ICU4     <----------DOF2              --------->AHL20(2)              --------->AtLEC2     <------- ------GT1 <---------DAG2<---------WOX13(1)   --------->GLK1(2)    --------->ANAC46          --------   ccatattcaaatacttttttaaccatgattgaaaactactaagaaaataatcttttcttagttttgtaaacgacatgcactatttattagtctggtggta  5778700                                    --------->YAB1                                  ------>MYB83                                  ------>MYB46(1)                      --------->TOE2(3)                     --------->ANAC58     ------>ZmHOX2a(2)                     --------->ANAC58   --------->ARR11(3)                     --------->ANAC46   <---------ARR11(3)                            --------->MYB59              <---------YAB1      -------->P                                 --------->ARR11(3)            <---------ICU4       --------->MYB55(1)                         <-----------GT1           --------->ICU4       <---------MYB111(2)                      <---------AHL20(2)    <-----      <---------bZIP60(1)       <---------MYB59                          --------->AHL20(2) <--------      --------->bZIP60(1)       <---------MYB46(2)              --------->HSFB2a(2)   <---------TOE2(3) --MYB46(3)<---------YAB1       <---------MYB111(1)             <---------HSFB2a(2)   <---------TOE1(3) --->GT1  --------->TOE2(3)  <-----------GT1           <------ZmHOX2a(2)--------->AHL20(2) --------->KAN4(2)   acatagtgacaacattattacaaacgtcaatatacctaccatgatctcgatgactcgatcaaatttttagaaaaattaataccttgtttaggttattctt  5778800  Previous    Next  AGI:  At1g16890.1    Description:  UBC13B/UBC36 (UBIQUITIN-CONJUGATING ENZYME 36); protein binding / ubiquitin-protein ligase. similar to UBC13A/UBC35 (UBIQUITIN-CONJUGATING ENZYME35), ubiquitin-protein ligase [Arabidopsis thaliana] (TAIR:AT1G78870.2); similar to ubiquitin-conjugating enzyme 1 [Arachis hypogaea] (GB:AAZ20286.1); contains InterPro domain Ubiquitin-conjugating enzyme, E2; (InterPro:IPR000608); contains InterPro domain Ubiquitin-conjugating enzyme/RWD-like (InterPro:IPR016135) Range:  from: 5776339    to: 5778256    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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