Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100               --------->ZAT18      --------->CCA1(2)      <------ZmHOX2a(2)                              <---------AHL20(1)     --------->ARR11(3)                     --------->ANAC58     --------->AGP1                         --------->ANAC58                                    -----     <---------ARR14(2)         <---------MYB52(1)   --------->AHL20(2)                         <----     <---------ARR11(3)         --------->DOF5.7(2)  <---------AHL20(2)                ----------->GT1     --------->ARR14(2)        --------->TOE2(3)     --------->AHL20(1)               --------->ANAC58 -------->HVH21               ----------->GT1       --------->AHL20(2)                --------->ANAC58 ---->At4g35610              <---------TOE2(3)      <---------AHL20(2)            --------->AtMYB61 -----At4g35610  --------->ICU4--------->TOE1(3)  --------->YAB1      ----------->RAV1(1)     -------   ctgacaagatccaaatgccctaattgtcttaaacgttaatttcaagaagcaaaaataaattgaagagtttagcaacatggacgaccacaaggaaaaaaaa  5652500                                                                                         --------->AHL20(2)                                                                                         <---------AHL20(2)                       ----------->GT1                                                  <---------AHL20(1)                       --------->ICU4                                      --------->AHL20(2)                       <---------YAB1                                     <---------AHL20(1)                  --------->TOE2(3)                                       --------->AHL20(1)     ---- ------>GT1       --------->TOE1(3)                                      --------->AHL20(2)   <------ ------ID1        --------->YAB1                                ---------->DOF2         --------->AHL20(2) --->DOF2 ---------->DOF2                       ----------->RAV1(1)----------->GT1      <---------AHL20(2)   gaaaaaccaaaataaagaaaccataatgtttataaacttgcaatatacaacaacaaaatagtgaccaaaaggaaaatatatatacaacaatttttttaac  5652600                                                     --------->ARR11(3)                                                     <---------ARR11(3)                                                    --------->REM1(1)                                 ----------->GT1  ----------->RAV1(1)                               <---------ZAT14 --------->ANAC46                        ---------->DOF2      --------->At4g35610                       --------->ZAT18                   --------->AHL20(2)        <---------At4g35610                       <---------ZAT18  ----------->GT1  <---------AHL20(2)        =================RAV               <---------ARR11(3) ------>DOF2  XXXXXXXXXXXXXXXXXXX>MIR158A    ----------->RAV1(2)                --------->GLK1(2) -----GT1     XXXXXXXXXXXXXXXXXXX>MIR158B  <-----------GT1   <-----------GT1    --------->ARR11(3)   aaagtggctaaaatcccaaatttaaacaaagagagaagtgaattttcacctgcaacatcttattgacattactagcaccaaaaatcttgtggacaatggc  5652700                                                                                            <--------                                                                                 ------>NtERF2                                                                                 --------->LBD16                                                                                 <---------ATERF1(1)                           <---------ANAC55(2)                                   <---------RAP2.6(3)                          <---------LBD16                                       --------->ATERF1(2)                        --------->ARR14(2)                                      <---------ATERF1(2)                        <---------ARR14(2)                                      --------->RAP2.6(2)                    <------NtERF2                                               --------->DEAR3(1)                   ----------->GT1                                              --------->RAP2.3(2)                   <------NtERF2                                           <---------At5g28300                   --------->LBD16    --------->ANAC58           --------->LBD16--------->ANAC46                  --------->RAP2.6(2) --------->ANAC58          --------->DEAR3(1)<------NtERF2                 <---------LBD16 ---------->DOF2 <-----------HVH21<------NtERF2<---------LBD16            <----------DOF2--------->ANAC46  ------->TEIL      <---------LBD16<---------At4g35610   aaacttgtaaggctctttggccggaaaatacggagcaaagacgcatgaatctttcacacattttcgccggagaagtttacagccggcacaaggcgatact  5652800                  <----------DOF2                                                                  <-                 <---------DAG2                                                                    <-     --------->LBD16                                                                            -----    <---------ANAC58                                                                           <-----    <---------ANAC58                                                                           <-----    <---------ANAC46                                                                         <-------    <---------ANAC55(1)                                                              <---------TOE2(3)    <---------ANAC55(2)                                                             <---------DOF5.7(2)    --------->ANAC55(2)---------->ID1                                             --------->DOF5.7(2) -ARR14(2)  ----------->HVH21                                               *TSS <----------DOF2<----   gttcttccgtgtctgtgacccttttgtctcatttagaagagagagtttttgagaattgagagcaaaacaagaagagaagaagactttaacgaatagtgtg  5652900                                                        ------>MYB83       --------->AHL20(2)                          <---------PCF2--------->AHL20(2)       <-----------TBP                             --------->TCP15(1)   <---------ANAC46                    <---------ARR11(3)      ----------->GT1 --------ANAC58                        --------->ARR11(3)     --------->DAG2          --------------- --------ANAC58                        <---------ARR14(2)    ---------->DOF2          <----------DOF2 ---->ZAT18                            --------->ARR14(2) ------->GAMYB              <---------ANAC58 ----ANAC58                           <---------CCA1(2) ------>MYB46(1)              <---------ANAC58 ----ANAC58               ----------->GT1        <---------MYB46(3)             --------->ARR14(2) --ANAC46               ---------->DOF2<-----------ARR10-------->P              <---------GLK1(2) -----ZAT18    ---------->DOF2    --------->TOE2(3)--------->TCP20            ----------->ARR10     -   tgcttgtgtttatatagaaaagaagagaaagtaaaacatcaaatcttcttgtgggtccaacccaaaagtaaataagtcattagatttgctttgtttggac  5653000                                   <---------ALFIN1                                  <---------ZAT18                                ---------->ID1                        <---------GLK1(1)                        --------->GLK1(1)                         --------->AHL20(2)                       <---------ARR11(3)         <---------TOE1(2)                       --------->ARR11(3)         <---------TOE2(2)              <---------GLK1(2) --------->PCF2   <-----------RAV1(2)  <---------AHL20(2)      <------ >AGL15 <---------CCA1(2)   <----------DOF2 <---------GLK1(2)     <---------AHL20(2)          <------ --------->DOF2      <---------TOE2(3) --------->YAB1    <---------AHL20(2)                   <------   aaaaaatcgcatctctgattcttaagatttctttggcccacttataaattctcaggttttttattcatttatatatatgttgaataggtttttgtttcgt  5653100                                                            ----------->RAV1(1)                                                         --------->ANAC46                         --------->CCA1(2)               --------->ANAC58      <---------AHL20(2)--------->ARR11(3)   <---------ANAC58 ---ANAC46              <---------ARR14(2)   <---------ANAC46                                    <--- ---ANAC58        <---------ZAT14            <---------ANAC58 <---------ICU4               <---------AtMYB61 ---ANAC58        --------->ZAT14--------->ZAT18         --------->ANAC58      <-----------GT1 ------   ctgtatattgaattgaatactatacagatatagtttgcactattgtttcttgcaagtcgacgcaacattacttctctatttttactccttgttttggtcg  5653200                          ------>ZmHOX2a(2)                        <---------AGP1                        --------->AGP1   <---------ARR11(3)                        --------->ARR14(3)                        <---------ARR14(3)                        <---------ARR14(2)                        --------->ARR14(2)                        --------->ARR11(3)                    --------->YAB1       --------->ARR11(3)              --------->At5g28300       --------->YAB1        ----------->HVH21<------ZmHOX2a(2) --------->YAB1       <-----------HVH21<---------ARR11(3)<---------YAB1 ------ANAC46----------->GT1           <---------YAB1 --->ETT(1)  --------->LBD16       <----------DOF2                ------->TEIL    <----------DOF2   ggtatggaatgtcaccggtgaatcaagatcttgttttctttatgatcataagaaatcgttttgatatgaattttcaaatgctgtctttgctaatattgtc  5653300                                               <---------ATHB12                                        ------>MYB46(1)                                        ------>MYB83                                      --------->DEAR3(1)                          --------->YAB1  ---                                 <-----------GT1            --------->ANAC58  <---------AHL20(2)  ---                           <---------YAB1 --------->LBD16   --------->ANAC58  <---------YAB1      ---                        <---------YAB1<---------ALFIN1--------->SPL7    ----------->GT1           ---                 --------->YAB1 ----------->HVH21     <-------TEIL      <---------ANAC46 ----------->GT1        <---------YAB1<----------DOF2 --------->AtMYB61     --------->AtLEC2--------->YAB1 <---------YAB1   tactactagtataaatgtataatactttgattatttgacacctccccaaatcaacgtacaacatgcaaaccatgtcgtttataattgtaagttgttattc  5653400  Previous    Next  AGI:  At1g16530.1    Description:  ASL9/LBD3 (LOB DOMAIN-CONTAINING PROTEIN 3). Identical to LOB domain-containing protein 3 (LBD3) [Arabidopsis Thaliana] (GB:Q9SA51); similar to LBD4 (LOB DOMAIN-CONTAINING PROTEIN 4) [Arabidopsis thaliana] (TAIR:AT1G31320.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN83356.1); contains InterPro domain Lateral organ boundaries, LOB (InterPro:IPR004883) Range:  from: 5651363    to: 5652876    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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