Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                 <---------DAG2                          ---------->DOF2                      <---------ANAC55(2)                      --------->ANAC46                                 --------->ANAC46                      --------->ANAC58                       <---------ANAC46                      --------->ANAC58                       <---------ZAT6<------------CBF         - ------>TOE1(2)  ------->GAMYB <----------DOF2               ----------->GT1  --------->ATHB12      - --->MYB52(1)   --------->MYB46(3)                   --------->LBD16   --------->ANAC58           --- -->TOE1(2)     <---------MYB52(2)                 <---------LBD16     --------->ANAC58   --------->LBD16 --MYB52(2)   ----------->RAV1(1)              --------->MYB52(2) --------->ARR14(2)     --------->ANAC46 ->MYB46(3)   *TSS    --------->ANAC55(1)    <---------MYB52(1)   <---------ARR14(2)    <---------LBD16   cgagcgatggagacaacaacaaacacgcaaaagctttttctctattagttagtcgcgcgactagtgtgaatacgagccattgatgggttaaccggaatgc  5497800       ------>MYB46(1)                                                                   <---------MYB52(1)       ------>MYB83                                                                   <---------TOE1(3)     ------->GAMYB                                                                    <---------TOE2(3)     --------->DREB2C(2)                                                             <-----------GT1    --------->DEAR3(2)                                                          ------>ZmHOX2a(2)   ------>MYB46(1)                                                             <---------RVE1(1)   ------>MYB83                                        <-----------ARR10       <------ZmHOX2a(2)  --------->ORA47(1)                            <---------AHL20(2)            <---------AGP1 ------->GAMYB                               <---------AHL20(2)               --------->ARR11(3) ----------->HVH21            --------->ZAT6 --------->AHL20(2)               <---------ARR11(3) --------->DEAR3(1)       <---------MYB52(1) --------->AHL20(1)               --------->AGP1        < -------->DEAR3(2)   <---------At5g28300     <---------AHL20(1)              <---------CCA1(2)    <-- -------->MYB46(3)   --------->MYB52(1)     --------->YAB1                  ----------->ARR10    ---- ------>MYB52(1)    <-----------GT1         --------->AHL20(2)    <---------MYB59<----------DOF2 <---   taaccgaccgactatagctaatttaccggttatctctaacttcccattatattatcaaatctaaactacttaactacttagatcttttaacgttgtgtca  5497900                                       <---------At5g28300                                  <---------ICU4                                  <--------ATHB1                                  --------->YAB1                                  <--------HAHB4                                            <-------TEIL                                  -------->HAHB4                                  --------->AHL20(2)                                  --------->ATHB51                                <---------AHL20(2)                           ----------->GT1                                        --------->ATHB51                          <---------YAB1 ------->GAMYB                            --------->ATHB12                          <---------TOE2(3)                           <--------ATHB1       --------->ARR14(1)                          <---------TOE1(3)                           --------->ATHB12     --------->CCA1(2)                    <---------AHL20(2)--------->MYB52(1) --------->ARR11(3)      <---------AHL20(1) --------->ZAT6    <---------YAB1--------->AHL20(2)      <---------ARR11(3)      <---------AHL20(2) <-----------GT1  <---------AHL20(2)  <-----------GT1  ----------->ARR10<---------WOX13(1)--------->ARR11(1) ---------YAB1  <---------YAB1   <---------YAB1    ----------->GT1   <---------YAB1       <---------ARR14(2) -------ICU4   <---------AHL20(1)--------->ICU4   --------->DAG2     --------->ICU4       --------->ARR14(2) ----->ICU4   --------->ATHB51>>>>>>>>>GT-1----------->GT1    --------->MYB52(1) --------->AHL20(2) ------YAB1   --------->AHL20(2) <---------ATHB51---------->DOF2    <---------WOX13(1)    <---------GLK1(2)   ttatcactatctcccattatttttatttatggttaataattaaccgagtaataaagtaagatactaactgaatgattgaacaaattatttgagattcgca  5498000                                                                               <------------CBF                                                                             <---------ARR14(2)          <---------YAB1                          --------->HSFC1(1)         <---------ARR11(3)      ----------->GT1              --------->MYB52(1)                        --------->ARR14(2)    --------->MYB52(1) --------->GLK1(1)          <---------HSFB2a(2)        --------->ARR11(3) --------->ANAC58      <---------GLK1(1)          --------->HSFB2a(2)   <-----------HVH21 --------->ANAC46     --------->ARR14(2)       --------->GLK1(2)  <-----------GT1         --------->AHL20(2) --------->ANAC58     <---------ARR14(2) --------->ALFIN1        <-----------GT1  <-----------GT1   ttcacacaacgtataattcagacggatatgtctgacttaaccggtggagcatctagaaatattcggtttacccgtttcagatattgacccgattatttga  5498100                               <---------At4g35610                               --------->ZAT2                               <---------ZAT2                               --------->At4g35610                            --------->At4g35610                            <---------At4g35610                         <---------MYB52(1)                        <-------GAMYB  ----------->RAV1(2)                       --------->MYB55(2)                  <---------ANAC58                       <---------MYB46(3)      ------>ZmHOX2a(1)            <---------ANAC55(2)                 <---------ANAC58      <---------ZAT2      *TSS             --------->ANAC55(2)                 <---------ANAC58    <---------ALFIN1      <---------ANAC58 <---------ANAC58                 <---------ANAC46   <---------ZAT18     <---------ARR11(3)  <---------ANAC46        --------->LBD16<---------DEAR3(2)      ==================HOX2a_HOX2a----------->GT1      <---------LBD16 <---------RAP2.6(2)     <---------ALFIN1<-----------HVH21  --------->ICU4    --------->ARR14(2)<---------DEAR3(1)<-------PIF5<---------ANAC58      <---------ANAC46    <---------ARR14(2)<---------ANAC46 <---------At4g35610------>ZmHOX2a(2) <---------ANAC58  ----------->HVH21  <------NtERF2  <---------ETT(2)--------->TOE2(3)   <-----------HVH21         ---  --------->ANAC46  ------------>AtMYB77------->PIF5<---------ANAC58   <-----------RAV1(1)        <--   taacccgacccggtttatttcgtggcggttagcagctgtccacctgctcctcttccttgatccttgtcacaaaatgtcgcgtaattcttctactgatttc  5498200                                                                           <---------ZAT18                                                                           --------->ZAT14                                                                           <---------ZAT14                                                                       ------>ZmHOX2a(2)                                                                       <---------MYB46(3)                                                                       ==============================                                                                      ===============================                                    <---------TOE2(3)                --------->ARR14(2)            <-                       <---------ANAC58                              <---------ARR14(2)        <----- ------>At4g35610      <---------ANAC46 --------->WRKY12  ------->TEIL<------ZmHOX2a(2)     <-------- -------At4g35610      <---------ANAC58 --------->WRKY38(1)          <---------MYB52(1)     <--------   agctcaatcgctcaaattcgagtttgcgtttagaaattgaagttgactcttctgttcttgaatctatctccgatcggtgaactatctcgcagtaccagga  5498300                                                                        --------->ARR14(2)                                                                       <---------MYB52(1)                                                                     <---------ANAC58                                                                   <-----------GT1                                                                  <-----------GT1                                                                 xxxxxxxxxxxxxxxx>smallRNA(i) =HOX2a_HOX2a                                                 <---------AHL20(2) =HOX2a_HOX2a                                                --------->AHL20(2) --------WOX13(1)                                            <---------AHL20(2) -ZmHOX2a(1)                        ------>ZmHOX2a(1)  --------->ANAC55(2)  ------>ZmHOX2a(1) <------ -LBD16   ------>ZmHOX2a(1)      ---------->ID1      <-----------GT1 <---------ANAC58   --------->At5g28300 ---RAV1(2)            <----------DOF2     ----------->GT1   <---------AHL20(1)        ----------->GT1   gattgatcactccttcgacattgctctttgaattcgtcctcaaggtagtcaattttcacttaattttttttccgtttcctagccttctacagtaattttc  5498400                                                              <-------GAMYB                                                             <---------MYB46(3)                                                            --------->ALFIN1                                                           --------->LBD16                                          <---------ANAC58<---------O2                                      <---------MYB59     <---------bZIP60(2)                                      --------->TOE2(3)   <---------ANAC46                                     --------->HSFB2a(1)  <---------ANAC58                                     <---------HSFB2a(1)--------->ZAT18  <---------HSFB2a(2)             <------ZmHOX2a(1)  <---------ANAC58         --------->ZAT18  --------->HSFB2a(2)           --------->MYB59      <---------ANAC58 >>>>>>>>>>>>>>>>>LFY --------->LBD16 -----GT1                  <---------YAB1 <---------ANAC58<---------ANAC58    <---------ZAT18       <   tcttctcgatgtatgggttcttcggtcttcttattaggaaccttacttggtatttgtgtgccgtggttgaatcaccaatgtgctcttgaaaccctgaaat  5498500                                                        <---------ANAC58                                                        <---------ANAC58  <---------ANAC58                                                  <-----------GT1         <---------ANAC58                                               --------->YAB1            <---------MYB46(3)                                               ----------->GT1          --------->ARR14(2)                                          --------->MYB46(3)            <---------ARR14(2)                                         --------->ANAC58          <---------bZIP60(2)                                         --------->ANAC58          <---------ANAC46                    <-------TEIL        ------->GAMYB <---------YAB1<---------LBD16              ----                --------------->AtSPL8 --------->MYB46(3)       ----------->HVH21               <----                <---------------AtSPL8 <---------MYB111(2)      ----------->TGA1           <---------TOE1(3) ----------DOF2 <---------------AtSPL3 <---------MYB55(2)   <---------GLK1(2)         <---------ZAT6   tactttggattttgaagtagagtacatccacattggaaacaacaaccaattgtaacatgcttgattctgacgcggttcttgcattgtattgttagggtat  5498600                             <------NtERF2                           <---------ANAC58                           <---------ANAC58                     <---------ARR14(2)                     --------->ARR14(2)                  <---------HSFB2a(2)                  <---------------AGL15                  --------------->AGL15                  --------->HSFB2a(2)                 <-----------------AGL2                 <-----------------AGL1                 ----------------->AGL3                --------->MYB52(1)                                     --------->ATHB12                -------->P <---------ANAC46                     <---------ANAC58               <-----             <---------HSFC1(2)                 ---------->DOF2 <---------ANAC58     --------->WRKY18(1) ----->ICU4  --------->At4g35610              <---------YAB1    <---------AtLEC2   ----------->GT1 -----YAB1   --------->HSFC1(2)     --------->At4g35610     <----------DOF2    <------ZmHOX2a(1)<----   taatgagctcgtagaagctaccagaaatggcgtccatgagctctggtgatgaaagccttcgactttgcatgtttgatttgaggagaggtcaaactgaagg  5498700  Previous    Next  AGI:  At1g16010.1    Description:  magnesium transporter CorA-like family protein (MRS2-1). similar to magnesium transporter CorA-like family protein (MGT1) (MRS2) [Arabidopsis thaliana] (TAIR:AT1G80900.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN71705.1); contains InterPro domain Mg2+ transporter protein, CorA-like; (InterPro:IPR002523) Range:  from: 5495367    to: 5497714    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At1g16020.1    Description:  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G80910.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO42386.1); contains domain UNCHARACTERIZED (PTHR13056) Range:  from: 5498159    to: 5501352    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version