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Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
 
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                                                                                               -----
                                                                                               <----
                                                                                              <-----
                                                                                            <-------
                                                                                            --------
                                                                                      --------->AHL20(2)
                                                                                  --------->AHL20(2)
        <---------TOE2(3) <-----------GT1          --------->YAB1                 <---------AHL20(2)
   ------>ZmHOX2a(1)   <----------DOF2             <---------ICU4          ----------->GT1 <-------TEIL
---------->ID1----------->GT1                     <---------ATHB12  --------->TOE2(3) <---------AHL20(2)
-------DAG2  --------->DAG2  <----------DOF2    --------->WOX13(1) --------->YAB1 --------->AHL20(1)
--------DOF2---------->DOF2  <---------DAG2 <-----------GT1        ----------->GT1<---------AHL20(1)
 
cttttcctattgacgaaaagtcaaaacttttacttttctagtcttcttaaccaattatctcttgttggaatcgtaaataggttaataaaataaatacata  5389500
                                                                                                  --
                                                                                                 ---
                                                                                                 ---
       <---------AHL20(2)                                                                        <--
      --------->AHL20(2)         <-----------GT1                                    <---------GLK1(1)
      <---------AHL20(2)        <---------ZAT14                                     --------->GLK1(1)
---->ARR11(3)            <-----------GT1               --------->AHL20(2)<------ZmHOX2a(1)      <---
-----ARR11(3)          --------->ARR11(3)              --------->YAB1   <---------YAB1       <------
----CCA1(2)           --------->RVE1(1)           <---------AHL20(2)   <---------TOE2(2)    --------
--ANAC55(2)       --------->AHL20(2)    <---------AHL20(2) <-----------GT1    <---------YAB1<-------
->ANAC55(2)  ----------->GT1    --------->ZAT14   --------->AHL20(2)   <---------TOE2(3)------------
 
tctctataatttaaaatggaaaaaaatatcaccagtttactattttttttgatttaaattataaactttatacttaggattatgttgatttccaattaaa  5389600
        <---------ANAC58
        <---------ANAC58
      <-----------GT1
 <---------AHL20(2)
--------->AHL20(2)
<---------AHL20(2)                                                  --------->ANAC58
------->TOE2(3)                                                     --------->ANAC58
------>ATHB12                                   ------>NtERF2       --------->O2
------>YAB1                                    --------->ANAC46     <---------O2
-------ICU4                                   --------->At4g35610   --------->TGA1a
------ATHB12                               <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(l2)             --------
---AHL20(2)                               <-----------GT1   <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) ---
->AHL20(2)                          <---------AHL20(2)    --------->ATHB12             ----------->GT1
--AHL20(2)                       xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)              <---------ARR14(2)
--->AGL15                  --------->ARR11(3) <---------At4g35610   <---------TGA1a --------->ARR14(2)
 
tcattaatttttcttgactaaaccaattgagatactgattttttttttcagcgccatcaattgatttagacacgagagattacttcgaattcgaaaaaaa  5389700
                                                                           <---------TOE2(3)
                                  ----------->GT1                        --------->MYB52(2)
                                 <---------------AtSPL8                 <---------AtMYB61
                         --------->LBD16                         ------>ZmHOX2a(2)
                        <---------ANAC46                        <------ZmHOX2a(2)
                        ----------->GT1                         --------->CCA1(2)
      --------->LBD16   <---------ANAC55(2)                    >>>>>>>>>GATA-3
  --------->GLK1(2)  --------->GLK1(2)                         >>>>>>>>>GATA-4                 -----
  --------->ARR14(2) --------->ARR14(2)                        >>>>>>>>>GATA-1                 <----
  <---------ARR14(2) <---------ARR14(2)                        >>>>>>>>>GATA-2                <-----
 <---------GLK1(1)  <---------GLK1(1)----------->GT1           --------->ARR11(3)           --------
->AHL20(2)      ----------->GT1---------->DOF2                 --------->AGP1 <---------ANAC46------
-------->GT1   <------ZmHOX2a(1) --------->DAG2                <---------ARR11(3)----------->GT1
 
tagaaaatccgaagtagaggagaaaatccgtataaaaaggtagaaaaatttgaaatcgattttagagatctagggtttgtggtttggaaaatttctaata  5389800
                                                                 <---------AHL20(2)
                                                                 --------->AHL20(2)
                                   --------->AHL20(2)        <------ZmHOX2a(1)
     <-----------GT1               <---------AHL20(2)      <---------TOE2(3)
---->YAB1                          --------->AHL20(1)<---------AHL20(2)
-----ICU4                   ----------->GT1       --------->AHL20(2)                         <------
----ATHB12       <---------WRKY45 <---------AHL20(2) --------->AHL20(2)              <-------TEIL
->YAB1           <---------WRKY12 --------->AHL20(2)--------->AHL20(2)          ---------->DOF2   --
--->ICU4         <---------WRKY38(1)   ----------->GT1     <---------TOE1(3)<--------ZAP1    -------
 
atgtgtattaactggattagtcaacgagagttcgtaattaaattgaaaatcaatataaaattaaggatttaaatcactaggtcaaaagttcatgttctaa  5389900
                                  <---------RVE1(1)
                                  <---------CCA1(1)
         ----------->GT1         <---------ARR11(3)                         --------->HSFB2a(2)
  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)   ------------>CBF                  --------->HSFC1(1)
 ------>MYB46(1)                 --------->ARR11(3)                         <---------HSFB2a(2)
 ------>MYB83                   --------->YAB1                              <---------HSFC1(1)   ---
----------->RAV1(1)        <---------AHL20(2) *TSS                 <---------YAB1               ----
---HSFB2a(2)               --------->AHL20(2)<------------CBF      <---------AHL20(2)      =========
------->MYB46(3)       xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)   <----------DOF2             ---------
-->HSFB2a(2)        <---------At4g35610 <-----------GT1   <----------DOF2   >>>>>>>ZML2    <--------
 
aaccaacaaaaatggtaaactagtgctgatttaaatgatatttttaccaattgaaaatacactttccttttttattgttctagaagacttatccctctat  5390000
                                                                                        --------->ARR11(3)
                                                                                        <---------ARR14(2)
                                                   --------->TOE2(3)            <---------ARR11(3)
      <---------ALFIN1                 <---------ARR11(3)                       --------->ARR11(3)
------>DAG2                            --------->ARR11(3)              <---------------AGL15
------>DOF2                         --------->YAB1 --------->TOE1(3)<-----------GT1    <---------CCA1(2)
=======================================================================================MADS_MADS
------>AGL15               <---------ALFIN1       ----------->RAV1(2)  --------------->AGL15
-------AGL15            --------->YAB1<---------CCA1(2)      <---------YAB1<---------ATHB12
 
aaagtagccacactcttctgtcttctctcatcacctcattcatatctctctcaacctgaacattttcattttttctaaatcaagaacttcaaatcttgaa  5390100
                                --------->LBD16
                                --------->ANAC46                         --------->ANAC58
                               <---------HSFB2a(2)                       --------->ANAC46
                               --------->HSFB2a(2)                       --------->ANAC58
                           ------>ZmHOX2a(2)                           ---------->DOF2
                         --------->ARR14(2)                 --------->ANAC58
                         --------->ARR11(3)                 --------->ANAC46      --------------->AGL15
                  --------->KAN4(2)                         --------->ANAC58     <-----------------AGL1
              <---------At4g35610--------->LBD16           <---------TOE1(2)     <-----------------AGL2
     ---------->DOF2     <---------ARR11(3)               ------>ZmHOX2a(1)  <---------GLK1(1)
  <---------HSFB2a(2)    <-----------ARR10  --------->TOE1(2)        ------>ZmHOX2a(1)
  --------->HSFB2a(2)  ------>ZmHOX2a(1)    --------->TOE2(2)     ------>ZmHOX2a(1)
 
actttctaaaaagatggagcttattcctgatcttcccgaaactgtagcctacgagtgtctcctacgctcctcctacaagcaattccctcttatggcctct  5390200
                                                  ---------->DOF2
                                                --------->LBD16
                                              <---------LBD16
                                             ------>NtERF2
                                            <---------ALFIN1                      <---------ANAC58
                                         ----------->HVH21                        <---------ANAC58
                                         <---------ETT(1)                 <---------ANAC58
                   <---------GLK1(1)     --------->ANAC46                 <---------ANAC58
                   --------->GLK1(1)    ----------------->AGL1          <---------ARR11(3)
             <------NtERF2              <-----------------AGL1          --------->ARR11(3)  <-------
             --------->At4g35610       <-----------GT1      <------ZmHOX2a(1) ---------->ID1--------
 
gtttgcaaactctggcagcgagaaatcagcctctctgattttttccgacaccggaaagcttcaggacatagtcaagagcttgttgtcttgtctcaagctc  5390300
                                                          ------->TEIL
                                                          <---------ARR11(1)
                                                          --------->GLK1(2)
                                                          --------->ARR14(2)
                                                         <---------ARR14(1)
                                                         <---------CCA1(2)
                                                   <---------ZAT14
                                                   --------->ZAT14
                                                 --------->LBD16
                                                <------------------SPL14
                                             --------->DEAR3(1)
              --------->ARR11(3)             <---------ALFIN1
    <---------LBD16                   ------>MYB83 --------->REM1(2)                               <
--------->ETT(2)                    --------->AtMYB61  <---------MYB59                          ----
<---------ETT(2)                 <-----------GT1<---------ANAC46                                <---
<---------WRKY38(1)    <---------ANAC46     <---------ALFIN1     <---------ARR14(2)             <---
--------->WRKY38(1)  --------->ARR14(2)    ------>NtERF2 <---------GLK1(2)                      ----
----------->HVH21   <---------CCA1(2) ------>MYB46(1)------->TEIL--------->ARR14(2)           ------
--ZAT2    ---------->DOF2----------->GT1  --------->ANAC46<---------ARR14(2)              <------ZmHOX2a(1)
->ZAT2--------->LBD16<---------ARR14(2)   <---------ALFIN1<-----------ARR10    --------->MYB52(1)  -
 
gggtcgacccggttaaagaactcgtatcgggtaataaaaccatccccacccccgtgtaccgaatctcggttcttgaacttggtaccggtctaaggagcga  5390400
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AGI:  At1g15670.1   
Description:  kelch repeat-containing F-box family protein. similar to kelch repeat-containing F-box family protein [Arabidopsis thaliana] (TAIR:AT1G80440.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO45951.1); contains InterPro domain Kelch repeat type 1 (InterPro:IPR006652); contains InterPro domain Kelch-type beta propeller (InterPro:IPR015915); contains InterPro domain Cyclin-like F-box (InterPro:IPR001810); contains InterPro domain Kelch related (InterPro:IPR013089); contains InterPro domain Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043)
Range:  from: 5389947    to: 5391485    Orientation: Forward
Links:  TAIR  MIPS 
 
 
Please cite the corresponding publications when using AthaMap.

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