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Chromosome 1
Chromosome 2
Chromosome 3
Chromosome 4
Chromosome 5
Position
Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
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1 10 20 30 40 50 60 70 80 90 100
-----
<----
<-----
<-------
--------
--------->
AHL20(2)
--------->
AHL20(2)
<---------
TOE2(3)
<-----------
GT1
--------->
YAB1
<---------
AHL20(2)
------>
ZmHOX2a(1)
<----------
DOF2
<---------
ICU4
----------->
GT1
<-------
TEIL
---------->
ID1
----------->
GT1
<---------
ATHB12
--------->
TOE2(3)
<---------
AHL20(2)
-------
DAG2
--------->
DAG2
<----------
DOF2
--------->
WOX13(1)
--------->
YAB1
--------->
AHL20(1)
--------
DOF2
---------->
DOF2
<---------
DAG2
<-----------
GT1
----------->
GT1
<---------
AHL20(1)
cttttcctattgacgaaaagtcaaaacttttacttttctagtcttcttaaccaattatctcttgttggaatcgtaaataggttaataaaataaatacata
5389500
--
---
---
<---------
AHL20(2)
<--
--------->
AHL20(2)
<-----------
GT1
<---------
GLK1(1)
<---------
AHL20(2)
<---------
ZAT14
--------->
GLK1(1)
---->
ARR11(3)
<-----------
GT1
--------->
AHL20(2)
<------
ZmHOX2a(1)
<---
-----
ARR11(3)
--------->
ARR11(3)
--------->
YAB1
<---------
YAB1
<------
----
CCA1(2)
--------->
RVE1(1)
<---------
AHL20(2)
<---------
TOE2(2)
--------
--
ANAC55(2)
--------->
AHL20(2)
<---------
AHL20(2)
<-----------
GT1
<---------
YAB1
<-------
->
ANAC55(2)
----------->
GT1
--------->
ZAT14
--------->
AHL20(2)
<---------
TOE2(3)
------------
tctctataatttaaaatggaaaaaaatatcaccagtttactattttttttgatttaaattataaactttatacttaggattatgttgatttccaattaaa
5389600
<---------
ANAC58
<---------
ANAC58
<-----------
GT1
<---------
AHL20(2)
--------->
AHL20(2)
<---------
AHL20(2)
--------->
ANAC58
------->
TOE2(3)
--------->
ANAC58
------>
ATHB12
------>
NtERF2
--------->
O2
------>
YAB1
--------->
ANAC46
<---------
O2
-------
ICU4
--------->
At4g35610
--------->
TGA1a
------
ATHB12
<xxxxxxxxxxxxxxxxxxxxxxx
smallRNA(l2)
--------
---
AHL20(2)
<-----------
GT1
<xxxxxxxxxxxxxxxxxxxxxx
smallRNA(si3)
---
->
AHL20(2)
<---------
AHL20(2)
--------->
ATHB12
----------->
GT1
--
AHL20(2)
xxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(le3)
<---------
ARR14(2)
--->
AGL15
--------->
ARR11(3)
<---------
At4g35610
<---------
TGA1a
--------->
ARR14(2)
tcattaatttttcttgactaaaccaattgagatactgattttttttttcagcgccatcaattgatttagacacgagagattacttcgaattcgaaaaaaa
5389700
<---------
TOE2(3)
----------->
GT1
--------->
MYB52(2)
<---------------
AtSPL8
<---------
AtMYB61
--------->
LBD16
------>
ZmHOX2a(2)
<---------
ANAC46
<------
ZmHOX2a(2)
----------->
GT1
--------->
CCA1(2)
--------->
LBD16
<---------
ANAC55(2)
>>>>>>>>>
GATA-3
--------->
GLK1(2)
--------->
GLK1(2)
>>>>>>>>>
GATA-4
-----
--------->
ARR14(2)
--------->
ARR14(2)
>>>>>>>>>
GATA-1
<----
<---------
ARR14(2)
<---------
ARR14(2)
>>>>>>>>>
GATA-2
<-----
<---------
GLK1(1)
<---------
GLK1(1)
----------->
GT1
--------->
ARR11(3)
--------
->
AHL20(2)
----------->
GT1
---------->
DOF2
--------->
AGP1
<---------
ANAC46
------
-------->
GT1
<------
ZmHOX2a(1)
--------->
DAG2
<---------
ARR11(3)
----------->
GT1
tagaaaatccgaagtagaggagaaaatccgtataaaaaggtagaaaaatttgaaatcgattttagagatctagggtttgtggtttggaaaatttctaata
5389800
<---------
AHL20(2)
--------->
AHL20(2)
--------->
AHL20(2)
<------
ZmHOX2a(1)
<-----------
GT1
<---------
AHL20(2)
<---------
TOE2(3)
---->
YAB1
--------->
AHL20(1)
<---------
AHL20(2)
-----
ICU4
----------->
GT1
--------->
AHL20(2)
<------
----
ATHB12
<---------
WRKY45
<---------
AHL20(2)
--------->
AHL20(2)
<-------
TEIL
->
YAB1
<---------
WRKY12
--------->
AHL20(2)
--------->
AHL20(2)
---------->
DOF2
--
--->
ICU4
<---------
WRKY38(1)
----------->
GT1
<---------
TOE1(3)
<--------
ZAP1
-------
atgtgtattaactggattagtcaacgagagttcgtaattaaattgaaaatcaatataaaattaaggatttaaatcactaggtcaaaagttcatgttctaa
5389900
<---------
RVE1(1)
<---------
CCA1(1)
----------->
GT1
<---------
ARR11(3)
--------->
HSFB2a(2)
xxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(si3)
------------>
CBF
--------->
HSFC1(1)
------>
MYB46(1)
--------->
ARR11(3)
<---------
HSFB2a(2)
------>
MYB83
--------->
YAB1
<---------
HSFC1(1)
---
----------->
RAV1(1)
<---------
AHL20(2)
*
TSS
<---------
YAB1
----
---
HSFB2a(2)
--------->
AHL20(2)
<------------
CBF
<---------
AHL20(2)
=========
------->
MYB46(3)
xxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(le3)
<----------
DOF2
---------
-->
HSFB2a(2)
<---------
At4g35610
<-----------
GT1
<----------
DOF2
>>>>>>>
ZML2
<--------
aaccaacaaaaatggtaaactagtgctgatttaaatgatattttta
ccaattgaaaatacactttccttttttattgttctagaagacttatccctctat
5390000
--------->
ARR11(3)
<---------
ARR14(2)
--------->
TOE2(3)
<---------
ARR11(3)
<---------
ALFIN1
<---------
ARR11(3)
--------->
ARR11(3)
------>
DAG2
--------->
ARR11(3)
<---------------
AGL15
------>
DOF2
--------->
YAB1
--------->
TOE1(3)
<-----------
GT1
<---------
CCA1(2)
=======================================================================================
MADS_MADS
------>
AGL15
<---------
ALFIN1
----------->
RAV1(2)
--------------->
AGL15
-------
AGL15
--------->
YAB1
<---------
CCA1(2)
<---------
YAB1
<---------
ATHB12
aaagtagccacactcttctgtcttctctcatcacctcattcatatctctctcaacctgaacattttcattttttctaaatcaagaacttcaaatcttgaa
5390100
--------->
LBD16
--------->
ANAC46
--------->
ANAC58
<---------
HSFB2a(2)
--------->
ANAC46
--------->
HSFB2a(2)
--------->
ANAC58
------>
ZmHOX2a(2)
---------->
DOF2
--------->
ARR14(2)
--------->
ANAC58
--------->
ARR11(3)
--------->
ANAC46
--------------->
AGL15
--------->
KAN4(2)
--------->
ANAC58
<-----------------
AGL1
<---------
At4g35610
--------->
LBD16
<---------
TOE1(2)
<-----------------
AGL2
---------->
DOF2
<---------
ARR11(3)
------>
ZmHOX2a(1)
<---------
GLK1(1)
<---------
HSFB2a(2)
<-----------
ARR10
--------->
TOE1(2)
------>
ZmHOX2a(1)
--------->
HSFB2a(2)
------>
ZmHOX2a(1)
--------->
TOE2(2)
------>
ZmHOX2a(1)
actttctaaaaag
atggagcttattcctgatcttcccgaaactgtagcctacgagtgtctcctacgctcctcctacaagcaattccctcttatggcctct
5390200
---------->
DOF2
--------->
LBD16
<---------
LBD16
------>
NtERF2
<---------
ALFIN1
<---------
ANAC58
----------->
HVH21
<---------
ANAC58
<---------
ETT(1)
<---------
ANAC58
<---------
GLK1(1)
--------->
ANAC46
<---------
ANAC58
--------->
GLK1(1)
----------------->
AGL1
<---------
ARR11(3)
<------
NtERF2
<-----------------
AGL1
--------->
ARR11(3)
<-------
--------->
At4g35610
<-----------
GT1
<------
ZmHOX2a(1)
---------->
ID1
--------
gtttgcaaactctggcagcgagaaatcagcctctctgattttttccgacaccggaaagcttcaggacatagtcaagagcttgttgtcttgtctcaagctc
5390300
------->
TEIL
<---------
ARR11(1)
--------->
GLK1(2)
--------->
ARR14(2)
<---------
ARR14(1)
<---------
CCA1(2)
<---------
ZAT14
--------->
ZAT14
--------->
LBD16
<------------------
SPL14
--------->
DEAR3(1)
--------->
ARR11(3)
<---------
ALFIN1
<---------
LBD16
------>
MYB83
--------->
REM1(2)
<
--------->
ETT(2)
--------->
AtMYB61
<---------
MYB59
----
<---------
ETT(2)
<-----------
GT1
<---------
ANAC46
<---
<---------
WRKY38(1)
<---------
ANAC46
<---------
ALFIN1
<---------
ARR14(2)
<---
--------->
WRKY38(1)
--------->
ARR14(2)
------>
NtERF2
<---------
GLK1(2)
----
----------->
HVH21
<---------
CCA1(2)
------>
MYB46(1)
------->
TEIL
--------->
ARR14(2)
------
--
ZAT2
---------->
DOF2
----------->
GT1
--------->
ANAC46
<---------
ARR14(2)
<------
ZmHOX2a(1)
->
ZAT2
--------->
LBD16
<---------
ARR14(2)
<---------
ALFIN1
<-----------
ARR10
--------->
MYB52(1)
-
gggtcgacccggttaaagaactcgtatcgggtaataaaaccatccccacccccgtgtaccgaatctcggttcttgaacttggtaccggtctaaggagcga
5390400
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AGI:
At1g15670.1
Description:
kelch repeat-containing F-box family protein. similar to kelch repeat-containing F-box family protein [Arabidopsis thaliana] (TAIR:AT1G80440.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO45951.1); contains InterPro domain Kelch repeat type 1 (InterPro:IPR006652); contains InterPro domain Kelch-type beta propeller (InterPro:IPR015915); contains InterPro domain Cyclin-like F-box (InterPro:IPR001810); contains InterPro domain Kelch related (InterPro:IPR013089); contains InterPro domain Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043)
Range:
from: 5389947
to: 5391485
Orientation: Forward
Links:
TAIR
MIPS
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publications
when using AthaMap.
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