Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100         <---------ALFIN1      --------->ARR14(2)    --------->LBD16   --------->RAP2.6(2)  <---------LBD16 -------->ARR14(2) ---------ARR14(2) ------->ATERF1(1)        <---------At4g35610 -------SPL7              <---------ZAT2 ----->DEAR3(1)           --------->At4g35610       <--------P --NtERF2           ------>NtERF2            ----------->HVH21                             <---------HSFB2a(2) >NtERF2           ----------->HVH21      <-------GAMYB                                <---------ANAC58 ---DEAR3(1)       --------->DEAR3(1)    <---------ANAC58                              <---------ANAC58 -->DEAR3(1)       <---------ETT(1)      <---------ANAC58                              <---------ANAC46 ->ATERF1(1)  <-----------HVH21      <---------ANAC58                                --------->ARR11(3) -ATERF1(1)----------->RAV1(2)       <---------ANAC58                     ----------->ARR10--------->HSFB2a(2) ->HVH21 <---------ALFIN1 --------->ZAT2 <---------ANAC46          --------->MYB52(1)<---------ARR11(3)   cgtagccggacacacctgtctccgaccgagcagacttaagcttgcgttggacaggtagcccgaagagactaccggtgagaaactcaatgtcttggagaag  5345800                                                                                <------MYB46(1)                                                                        <-----------HVH21                                                                       <---------ANAC58                                                                       <---------ANAC58                                                                <---------MYB52(1)                                                          --------->ARR14(2)    <------MYB83              <---------MYB46(3)                          <---------ARR14(2)    <---------MYB46(3)            --------->LBD16                            ----------------->AGL1  <---------AtMYB61           <---------ANAC46                           <-----------------AG  --------->LBD16           --------->DEAR3(1)                        <---------WRKY18(1)<---------SPL7        --------->ANAC46                         <-------TEIL <------MYB46(1)  --------->ALFIN1        --------->ANAC58          --------->ANAC58  ----------->HVH21  <---------ANAC46        --------->ANAC58          --------->ANAC58<---------AtLEC2--------->MYB52(2)  ---------->DOF2      --------->CCA1(2)        --------->AtLEC2<--------P<---------LBD16 ---------->DOF2    <---------TOE2(3)    <---------ARR11(3)   <------MYB83--------->SPL7   tcccaaaggcacgccgtggtttgagatttggaaggcaccccaagttctacatgcatgaccgatttggttagtcgcgtccgggtggtcgaggtcgatgaga  5345900                                                            <---------TCP20             --------->LBD16                                               --------->ARR11(3)                      --------->HSFB2a(2)                                               <---------ARR11(3)                      --------->LBD16                                               --------->ARR14(2)                     <---------LBD16                      ==================================HOX2a_HOX2a                  --------->MYB52(1)                      <------ZmHOX2a(1)        <---------ARR14(2)                 <---------At4g35610                   <------NtERF2              --------->GLK1(1)                   --------->At4g35610                  --------->LBD16             <---------GLK1(1)<---------ALFIN1   <---------ZAT2                  <------NtERF2    --------->LBD16          <---------TCP16(1)    --------->ZAT2                <---------LBD16   <---------ANAC46          <---------TCP11(2)    --------->HSFC1(2)                <---------ANAC46 <---------LBD16<------ZmHOX2a(2)                 <---------HSFC1(2)               <------NtERF2===========================HOX2a_HOX2a                --------->GLK1(1)              ------>NtERF2 <------ZmHOX2a(1)----------->ARR10<---------ZAT18     <---------GLK1(1)              <---------MYB46(3) --------->At4g35610        <---------PCF5     <---------MYB52(1)             ----------->HVH21   <---------At4g35610        --------->PCF2    --------->LBD16             --------->ALFIN1  --------->ATERF1(1)   <----------DOF2        <---------LBD16            <---------MYB52(1)--------->At4g35610------>ZmHOX2a(2)        <---------ARR14(2)            <-----------HVH21 --------->ZAT2<------ZmHOX2a(1) --------->ZAT18<---------LBD16         <---------LBD16    ============================HOX2a_HOX2a       --------->ARR14(2)        -       <-----------GT1=================================HOX2a_HOX2a        --------->GLK1(2)         <   gggatgttttcaccggtggccggaggagaaggagcagcggagaagaggagatcgtctttaggggtccacttgtaagaatccgggagctcccggagagatg  5346000                        ----------->GT1                        --------->At4g35610                 --------->ALFIN1      <---------MYB52(1)<------MYB46(1)    --------->MYB59     <---------At4g35610   <-----------RAV1(2)  <------MYB83                             --------->ANAC58 <---------AHL20(2) -------->bZIP60(1)    <---------DEAR3(1)                        --------->ANAC58 --------->AHL20(2) ---------bZIP60(1)--------->ALFIN1                      <---------YAB1      <----------DOF2        -   tgaagtcaggtatgtgagagtgtgggaggtgaatgggatggcctctaaacacatctgttaacatagcaggcatcttgctcttttttaattagttttaaaa  5346100                                                    <------MYB83                                                    <------MYB46(1)                                                   --------->MYB46(2)                                               <---------ANAC46                                             <---------ANAC46                                      <-                                            <---------AtMYB61                                   -----                                            --------->ALFIN1                                    <----                                           <---------ZAT14     <------------CBF               <------           <---------WOX13(1)             --------->ALFIN1   *TSS                            <-------        <---------YAB1             <---------YAB1  <---------MYB46(3)                        -------- ---------->GT1    <XXXXXXXXXXXXXXXXXXXXXMIR2936<---------MYB46(3)     <---------ZAT6 <-----------TBP   ctttgtaaatttgatagatgtttgtgttttttttcttatgagaagtgtggtgtttggtgatgggagattggaagagttagagagttttatttatagtggt  5346200                                                            <---------MYB46(3)                                                         <------------CBF                                                        --------->ATHB51                                                        --------->ATHB12                                                       <---------AHL20(2) --------ANAC46                                        <---------YAB1 ---->ALFIN1                                          --------->AHL20(2) -----ANAC46                                          --------->YAB1 ---MYB46(3)        ---------->DOF2                   <---------AHL20(1) --AtMYB61       <------NtERF2<<<<<<<<<MYB98 <---------AtMYB61  --------->KAN4(2)      <-----------GT1 ->ALFIN1     <------ZmHOX2a(1) ---------->DOF2  ------------>CBF           --------->ATHB12      ---   ggagtagagaccaagaggaggcaaaagcatatgttaaagcacttgttttggtccaatattattggttattctacttgtttattggattaatacaatacga  5346300                               --------->LBD16                               ------>NtERF2                  <---------YAB1                              --------->ANAC58                --------->AHL20(2)           <---------HSFB2a(2)--------->ANAC58                <---------AHL20(2)           --------->HSFC1(1)<---------LBD16                 --------->AHL20(1)           --------->HSFB2a(2)--------->ANAC46               <---------AHL20(1)     ------>MYB46(1)        <---------ATERF1(1)              --------->AHL20(2)     ------>MYB83          --------->PCF2               --------->AHL20(2)                   <-------TEIL   <---------MYB59         --------->PCF5               <---------AHL20(2)             --------->CCA1(2)   --------->AtMYB61      <-----------HVH21         --------->AHL20(2)          <---------YAB1   <--- ------>MYB46(3)  <---------YAB1           <----------DOF2  --------->YAB1<---------AHL20(2)---------   acaaaccaaacctctagaaaattatagaggtcccgccatttccttcttttgtaagaaaataaatataatttcttatttgattatgcaagataagatacat  5346400                                                                                        ------->TEIL                                                                                        <---------ARR14(2)                                                                                        --------->ARR14(2)        <---------ANAC58                                                                <---------ARR11(1)        <---------ANAC58                                                                <-----------ARR10   --------->ATHB12                           ----------->GT1                          <---------ARR14(1)  ----------->HVH21                       <---------TOE1(3)                            <---------CCA1(2) ----TEIL                                 <---------TOE2(3)                       <-----------GT1 >CCA1(2)                           <---------TOE2(3) ----------->GT1        ----------->GT1   acacatgatgggttgtcaaactatgtataattcaaattgaagttgaggtagtaatatggtatattgtgttcatatgtagaagttaaaccgtatctatcca  5346500                                                                                                  ---                                              <----------ID1                                      <--                    <---------TOE2(3)     ---------->DOF2                                         <--                 --------->AHL20(2)<---------ANAC58   --------->ANAC55(2)                         ---              <---------AHL20(2)   <---------ANAC58  <---------ICU4                --------->AHL20(2)             --------->AHL20(2)    <---------ANAC46  --------->YAB1                <---------AHL20(2)     <---------AHL20(2)            <---------ANAC55(2)<---------ANAC55(2) <----------ID1          ---    <---------AHL20(1)       <---------YAB1--------->DAG2             ---------->DOF2            ----    --------->AHL20(1)  ----------->GT1  <---------AHL20(2)       ---------->DOF2  --------->AHL20(1)    --------->AHL20(2)---------->DOF2 <---------ARR14(2)      ---------->DOF2     --------->AHL20(2)   ttacaatataatctataaatttaagaaagtgattaatgcgtatataaagggacaataagtattcaaaagaaagaaagagacaaaaaaaattgtagtctaa  5346600                                                                         --------->ATHB51                                                                         <--------ATHB1                                                                         --------->ATHB12                                                                         -------->ATHB1                                                                         <---------ICU4                                                                         --------->YAB1 ------>ATHB51                  ------>ZmHOX2a(1)                       --------->ICU4 -------AHL20(2)      ----------->GT1               <---------CCA1(2)   <---------ATHB51 -------ICU4          <------MYB83              <---------TOE2(3)       <---------ATHB12 ------>AHL20(2)      <------MYB46(1)--------->ATHB12    ----------->RAV1(1)  <---------YAB1 ------>ATHB12   --------->ATHB12   <---------ATHB12--------->GLK1(1)   <---------YAB1              - ----->ICU4 <---------TOE2(3)  --------->TOE2(3)<---------ANAC55(2)  ------------>ATHB5 ---------->DOF2   ttatttgttttgtttatgttgatttggttatttcctcagtcattggaattaagtatatccaacatttttcttcaattattgtcatactaaaaaagaagtc  5346700  Previous    Next  AGI:  At1g15550.1    Description:  GA4 (GA REQUIRING 4); gibberellin 3-beta-dioxygenase. Identical to Gibberellin 3-beta-dioxygenase 1 (GA4) [Arabidopsis Thaliana] (GB:Q39103); similar to GA4H (gibberellin 3 beta-hydroxylase), gibberellin 3-beta-dioxygenase [Arabidopsis thaliana] (TAIR:AT1G80340.1); similar to gibberellin 3-beta hydroxylase [Prunus subhirtella] (GB:BAD91162.1); contains InterPro domain 2OG-Fe(II) oxygenase (InterPro:IPR005123); contains InterPro domain Isopenicillin N synthase; (InterPro:IPR002283) Range:  from: 5344473    to: 5346161    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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