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AGI
% Restriction to highly conserved TF binding sites (0-100)
 
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                                           ------>ZmHOX2a(2)
                                           ====================HOX2a_HOX2a
                                          =====================HOX2a_HOX2a
                                          <------ZmHOX2a(2)
                                         <---------ARR14(2)
                                         --------->ARR14(2)
                                         <---------ARR11(3)
                                     ------->GAMYB      <XXXXXXXXXXXXXXXXXXXXMIR854A-E
                                    --------->MYB46(3)  ------>ZmHOX2a(1)
                               ===================HOX2a_HOX2a
                               ------>ZmHOX2a(1)        ================================HOX2a_HOX2a
                           --------->ARR14(2)      <---------At4g35610
              <------ZmHOX2a(1)==================HOX2a_HOX2a
              ====================================HOX2a_HOX2a
              ===================================HOX2a_HOX2a                       ------>ZmHOX2a(1)
  ----------->HVH21        <---------ARR14(2)    <------------------------ANAC81 ------>ZmHOX2a(2)
 
cacttctgacaatgtgaggactctcagacaaatccttcaaccaagatcggtttcatctcctcttcttcatcttcatcactctgatccttcttctcactgc  5242800
                                                                              <-----------ARR10
                                                                              <---------ARR14(2)
                                                                              --------->ARR14(2)
                                                                             ------>MYB46(1)
                                                                             ------>MYB83
                                                                           <---------MYB111(1)
                       ------>ZmHOX2a(2)                                   --------->AtMYB61
                      <------ZmHOX2a(2)                                 --------->AtMYB61
                     <---------ARR11(3)                                 <---------ALFIN1
                     --------->ARR11(3)                                --------->MYB46(3)
                     <---------ARR14(2)                               ------>NtERF2
                     --------->ARR14(2)    <-----------ARR10         --------->RAP2.6(2)
                     <---------GLK1(2)    <---------ZAT2            --------->MYB46(3)
                     --------->AGP1       --------->ZAT2            <---------MYB55(2)
                  --------->HSFB2a(2)     --------->At4g35610     --------->ANAC58
               --------->ARR11(3)        ------->TEIL             --------->ANAC58   ------>NtERF2
               <---------ARR11(3)      ------->GAMYB              ------>NtERF2     ------>NtERF2
        --------->TOE2(3)             --------->ANAC46            --------->ANAC46<---------LBD16
        --------->TOE1(3)      --------->MYB46(3)           ------>ZmHOX2a(1)<---------CCA1(2)
      <---------ARR11(3) ------>ZmHOX2a(1)<---------At4g35610    --------->DEAR3(1) --------->LBD16
 
ttctctcaataccttcaacatctagatccttcaaaccatcaacgcagctcttcccttcttctccttcgccagccaccaccaaatctccggcctgtttcga  5242900
                                                                                                   -
                                                                                                   -
                                                                                                 ===
                                                                                                 ---
                                                                                                ====
                                                                                                ----
                                                                                                ====
                                                                                                <---
                                                                                               -----
                                                                                      --------->ANAC55(2)
                                                                                      --------->ANAC46
                                                                                      <---------HSFB2a(2)
                                                                                     ---------------
                                         --------->ARR14(2)                          <--------------
                                         <---------ARR14(2)                   <---------At4g35610===
                                 --------->DEAR3(1)                           --------->ZAT14  <----
                                --------->ANAC58                       <---------ICU4<---------LBD16
                             <---------REM1(2)                       --------->GLK1(2)--------->HSFB2a(2)
                 <----------DOF2--------->ANAC58                     --------->ARR11(3)--------->LBD16
                <---------DAG2  --------->ANAC46                 --------->YAB1    <---------ARR14(2)
<---------At4g35610     --------->At4g35610                ------>ZmHOX2a(1)  <---------ZAT14 <-----
--------->At4g35610     <---------At4g35610   <----------DOF2    --------->TOE2(3) --------->ARR14(2)
 
ttcagccaacttctcaatgccttttccagctaaacacggcccagtatccctttcattgtctcctccaacgataatcttgtctgcagtttccggaatagga  5243000
                                                                                                   -
                                                                                                   <
                                                                                                   -
                                                                                                   <
                                                                                                  --
                                                                                                  <-
                                                                  <---------ARR14(2)              <-
      --------->MYB52(1)                                       <---------RAP2.6(2)               <--
     --------->MYB46(3)                                       <---------At4g35610                <--
-------->At4g35610                                            --------->At4g35610                ---
-------->LBD16                                               --------->MYB52(2)                 ----
========================HOX2a_HOX2a                          <---------DOF5.7(2)               <----
--->ZmHOX2a(2)                                             --------->DOF5.7(2)                 <----
========================HOX2a_HOX2a                 --------->MYB52(1)                         -----
----->ARR14(1)                                     <---------ZAT14--------->ARR14(2)           -----
===========================HOX2a_HOX2a             <---------REM1(2)                          <-----
---ZmHOX2a(2)                                      ----------->HVH21                          <-----
---->ARR14(2)                              --------->LBD16 <---------MYB52(1)                 <-----
-->AGL1  ------->GAMYB                    <---------ANAC46<----------DOF2                    <------
---AGL1 --------->MYB46(3)      <-----------ARR10 <-----------HVH21<----------DOF2         ---------
===========================HOX2a_HOX2a   ------>NtERF2--------->ANAC46                    <---------GLK1(2)
-----ARR14(2)       ------>ZmHOX2a(1)--------->ANAC46<---------LBD16               --------->LBD16--
-ZmHOX2a(1)      ------>ZmHOX2a(1)   <---------DEAR3(1)   <-----------HVH21        ------>ZmHOX2a(1)
 
tccgctaaacaaccgtcttcctcctcgtggtcgaatatcgacgctgcgcgagacttcacggcgttagcggctttgcgaaatgcttcctgaatagattccg  5243100
                                                ------>ZmHOX2a(2)
                                              --------->ARR14(2)
                                         <------NtERF2
                                        --------->MYB55(2)
                                        ------>NtERF2
    <---------ZAT14                   <---------LBD16
    --------->ZAT14                  ------>NtERF2
    <---------ZAT18                  <---------ATERF1(1)
  <---------At4g35610                <---------ERF1
  --------->At4g35610               --------->ATERF1(2)
  <------NtERF2                     <---------ATERF1(2)
-------->At4g35610                  <---------DEAR3(1)
---------At4g35610                  <---------RRTF1(2)
-------->ATERF1(1)                  <---------DREB2C(2)
------NtERF2                        <---------RAP2.3(3)
--------->RAV1(1)                   <---------RAP2.3(2)
--------ATERF1(1)                   <---------RAP2.6(2)
--------RAP2.3(1)                   --------->DEAR3(1)
-------ATERF1(2)                    <---------ANAC46
-------DEAR3(1)                    --------->ATERF1(1)
------>ATERF1(2)                 --------->ALFIN1
----->ATERF1(1)          --------->ATERF1(1)  <-----------ARR10
-----RAP2.3(1)           <------NtERF2<------NtERF2
-----ATERF1(1)          <---------SPL7--------->ATERF1(1)
---->LBD16              <---------ATERF1(1)   <---------ARR11(3)
->NtERF2                ------>NtERF2<---------RAP2.6(3)
----LBD16              <---------ANAC46<---------ANAC46
----RAP2.3(2)        <---------ATERF1(1)<---------MYB46(3) --------->ANAC58    <---------ATERF1(1)
----RAP2.6(2)      --------->DEAR3(2)<---------RAP2.3(1)   --------->ANAC46<---------ANAC58
---LBD16       --------->HSFB2a(2) <---------LBD16         --------->ANAC58<---------ANAC58
>GLK1(2) --------->ARR14(2)     ------->PIF5  <---------ARR14(2)        <----------DOF2
---->NtERF2  ------>ZmHOX2a(1)  <-------PIF5 <------ZmHOX2a(1)      <----------DOF2        <-------TEIL
 
gcggcagagcacaatcctcgagaccggcgtctgcaagtgccggcgggaggatcgtatcgagcaagccaactctttctttcgtagcctccatagatgcaga  5243200
                                                                          --------->At5g28300
                                                                          <------NtERF2
                                                 <---------AHL20(2)      ----------->GT1
                                                <---------AHL20(2)   --------->DAG2
                                         ----------->GT1         <------ZmHOX2a(1)
                 ----------->HVH21    <------------CBF        <---------LBD16                     <-
      <---------ZAT18            --------->TOE1(3)            --------->LBD16                     <-
      --------->ZAT14*TSS        --------->TOE2(3)     <----------DOF2  <---------DREB2C(2)    <----
 <-------TEIL   --------->LBD16------->TEIL     --------->AHL20(2) ---------->DOF2           -------
--------->GLK1(2)--------->LBD16 <-----------------AGL3------>ZmHOX2a(1)<---------DEAR3(1)  <-------
 
gagattcagagctctcttccctgaaatgtgaatgaaccctaaattggataattaaatcctttttccgaggaaaaggcggtgataagggtattccagtcat  5243300
                                                                ------>MYB46(1)
                                                                ------>MYB83             <---------WOX13(1)
                                                            ------>NtERF2              --------->ATHB12
      <-----------RAV1(1)                              <-------TEIL                  <---------WOX13(1)
    <------------CBF                                --------->HSFB2a(1)             <------------CBF
--------YAB1                                        <---------HSFB2a(1)            --------->ATHB12
----------GT1                                       <---------HSFC1(2) <------ZmHOX2a(2)<---------ANAC58
-----YAB1           <-----------GT1                 --------->HSFC1(2)<---------ARR11(3)<-----------
-->YAB1       ------>ZmHOX2a(2)               --------->At4g35610     --------->ARR11(3)<---------ANAC58
--ATHB12    <---------AGP1---------->DOF2   <---------ZAT18<---------ALFIN1    ------->TEIL >>>>>>>>
 
tatacttcattgttggatctaaattacaaaatagcccagtgttttagtgagcccaaggttcgacacctagcgagatcatatggacttgattgattgccca  5243400
                                                                      ------>MYB46(1)
                                                                      ------>MYB83
                                                                      -------->P
                                                                     ------>ZmHOX2a(1)
                                                                    <---------MYB111(2)     <-------
                                                                    <---------MYB55(2)<---------KAN4(1)
                                                                  ------>ZmHOX2a(1)   --------->KAN4(1)
                                                                ------>ZmHOX2a(2)     --------->HSFB2a(1)
                                                               <------ZmHOX2a(2)      <---------HSFC1(2)
                                                               =============HOX2a_HOX2a--------->KAN4(2)
                                                              <---------ARR14(2)      --------->HSFC1(2)
                                                              --------->ARR14(3)      <---------HSFB2a(1)
                                                              <---------GLK1(2)      <---------KAN4(2)
                                                              <---------ARR14(3)     ----------->ARR10
                        <---------TOE2(3)                     --------->ARR14(2) --------->LBD16
                <-----------GT1                               <---------ARR11(3) --------->ANAC46
          --------->AHL20(2)                                  --------->ARR11(3)--------->LBD16
         --------->AHL20(2)                                  --------->RVE1(1)  <---------LBD16
  ----------->GT1    <---------YAB1                       ---------->DOF2      <---------LBD16 <----
-CBF     --------->YAB1--------->YAB1                   <---------AHL20(2) --------->ARR14(2) ------
>>>>>>>>>LFY--------->YAB1                  *TSS        --------->AHL20(2) <---------ARR14(2)-------
 
gtgttttgttaataaaaataaaccattaatgaaatgctaacaacaacgaagagagagaattaaaagatcctcctaccgtattcccgggaacattcgccgg  5243500
     --------->ANAC58
     --------->ANAC55(2)
     --------->ANAC58
     --------->ANAC46
    <-------TEIL <---------HSFB2a(1)
    --------->SPL1(2)
    <---------LBD16      --------->LBD16
    ------->TEIL <---------HSFC1(2)
    --------->SPL7--------->AtMYB61
   --------->MYB52(1)   --------->ANAC46
   --------->SPL1(1)    --------->LBD16
  --------->TOE2(2) ------>MYB46(1)
  --------->TOE1(2) ------>MYB83                --------->GLK1(2)
  <---------SPL7 --------->HSFB2a(1)           --------->ARR14(2)
<---------------AtSPL3  <---------LBD16        <---------GLK1(2)                 --------->ANAC46
--------------->AtSPL3 <---------LBD16         <---------ARR14(2)              --------->MYB46(3)
<---------------AtSPL8 --------->LBD16       --------->DEAR3(1)          <-----------GT1
--LBD16          --------->HSFC1(2)       --------->DEAR3(1)         <---------ARR14(2)  <---------GLK1(2)
--NtERF2       ------->GAMYB---------->DOF2------>NtERF2             --------->ARR14(2)<---------ATHB12
--->LBD16     <---------MYB111(2)       <---------At5g28300   --------->ARR14(2) --------->ANAC58
-->DEAR3(1)   --------->MYB46(3) --------->GLK1(2)            <---------ARR14(2) --------->ANAC58
 
agaaacgtacggaatcaacaaccttccccgggaaagaatccattaccgccgattctatcaattcgtataccgtatttgactacccagccattgattctct  5243600
                                                                                <---------LBD16
                                                                                --------->LBD16
                                                                                --------->ANAC46
                                                                               <---------LBD16
                                                                               --------->LBD16
                                                --------->LBD16               <---------LBD16
                                               <---------HSFB2a(2)       <---------ICU4
                                              ------>ZmHOX2a(2)         ------>ZmHOX2a(1)
                                              =================================HOX2a_HOX2a
                                              <---------LBD16          <---------MYB59
                                          =============================HOX2a_HOX2a
                                          ------>ZmHOX2a(1)      ==============HOX2a_HOX2a
                                          ==============================HOX2a_HOX2a
                                        ----------------->AGL1   ===================================HOX2a_HOX2a
                                        <-----------------AGL1   ------>ZmHOX2a(2)
                                        ----------->RAV1(2)     ====================================HOX2a_HOX2a
                                     <----------DOF2            ===============HOX2a_HOX2a
                                    <---------ICU4             <---------ARR11(3)
             <---------YAB1   --------->ZAT2--------->ARR14(2) --------->ARR11(3)
          <----------DOF2     <---------At4g35610              <---------ARR14(2)            ------>ZmHOX2a(1)
          <---------DAG2      --------->At4g35610 --------->SPL7<------ZmHOX2a(2)        <---------PCF2
         <---------DAG2       <---------ZAT2<---------ARR14(2) --------->ARR14(2)--------->LBD16  --
 
ctccctctcttcccttttcattgtttctaaaccagctcatctttcctgatccggacgtttttcgaagatcgggtcctaattccccgggaatgggtcctta  5243700
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AGI:  At1g15230.1   
Description:  similar to unnamed protein product [Vitis vinifera] (GB:CAO45882.1)
Range:  from: 5242193    to: 5243222    Orientation: Reverse
Links:  TAIR  MIPS 
 
AGI:  At1g15240.1   
Description:  phox (PX) domain-containing protein. similar to phox (PX) domain-containing protein [Arabidopsis thaliana] (TAIR:AT2G15900.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO45897.1); contains InterPro domain Phox-like; (InterPro:IPR001683); contains InterPro domain PX-associated; (InterPro:IPR003114)
Range:  from: 5243445    to: 5246666    Orientation: Forward
Links:  TAIR  MIPS 
 
 
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