Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                         --------->YAB1                               ------>MYB83                               ------>MYB46(1)                               --------->MYB52(1)                             <---------GLK1(2)                             --------->AtMYB61      --------->YAB1            --------->ARR11(3)                             <---------MYB46(2)<---------AHL20(2)             <---------ARR11(3)          ------->TEIL       <---------MYB111(1)   --------->AHL20(2)    <---------ANAC46      ------->TEIL           <---------MYB59   --------->AHL20(1)  xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)      --------------->AtSPL8--------->ANAC46   --------->AHL20(2)  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) <---------At5g28300      <-----------GT1 --------->AHL20(2)       xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)   aattactgtatgtaccaaaaccacatttataccaaaccgcatcataaaataaaataaaaattcttaaggcctgttttgtagattttgtaagagtttttgg  5198600                                                                                             <-------                                   --------->ARR11(3)                                  <-----------GT1                                   <---------ARR11(3)                           ----------->GT1                               --------->YAB1                               --------->AHL20(2)    <--                              <---------ATHB12                              <---------AHL20(1)  -----                             ------>MYB46(1)                                --------->AHL20(1)  <----                             ------>MYB83                                   <---------AHL20(2)-------                            --------->WOX13(1)                  ----------->GT1 --------->YAB1<xxxxxx   tttttgttttttaaaaacttattttcataccaatcaagattttaaaattttggtttccctacaatttagtaaaactattttattgtaattttccattcat  5198700                                                          <---------YAB1                                                       <---------MYB52(1)                                                      --------->TOE2(3)                                                    <---------TOE2(3) --ATHB12                       --------->ARR11(3)  <xxxxxxxxxxxxxxxxsmallRNA(i) -------ARR11(3)               --------->GLK1(1)  --------->YAB1 ---->ICU4                   <------ZmHOX2a(1) --------->WOX13(1)                           <-------- -----YAB1                 <---------TOE2(3)  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)         <-------- -->YAB1         ----------->GT1--------->GLK1(2)--------->MYB46(3)                        <---------ARR11(3) xxxxxxxxxxxxxxxxsmallRNA(se3) <---------GLK1(1) <---------ATHB12                          --------->ARR11(3)   gattttagttttttagtttttgtaaaatttaggaaatctagtttttgttcaatcaacgttatttttctcaaaaaccaaaaaccattttttggagattttt  5198800                     --------->GLK1(2)                     <---------ARR11(3)                     --------->ARR11(3)              --------->YAB1           --------->YAB1          <---------AHL20(2)          <---------YAB1         --------->AHL20(1)      --------->AHL20(2)                                                                 <---------MYB59 -CCA1(1)<---------AHL20(1)       --------->ARR11(3)   --------->ARR11(3)   <---------AHL20(2) -RVE1(1)--------->AHL20(2)       <---------ARR11(3)   <---------ARR11(3)   --------->AHL20(2)   tgaacaaaaaatataataacaaaaatctaaaactaaaatctaaaattcagaaactaaaatctaaactcaaaaactaaattaaaaatcagggcctaaattt  5198900                                           <------------CBF                                         <---------AHL20(2)                                ------>MYB46(1)                                ------>MYB83                                               --------->ANAC58                              --------->AtMYB61             <-----------GT1                --------->ANAC58                              <---------MYB59            --------->bZIP60(1)    ---------->DOF2                   --------->YAB1  ----------->RAV1(1)   <---------bZIP60(1)  --------->YAB1        <                  <---------YAB1--------->ANAC46  <---------ARR14(2)         ----------->TBP  -------   tgacataatatggatagatgatgatagtgagaccaaaccacataatattgcatattttgatgtcaccatttgatagcctataaaaaggagaagaagcaaa  5199000                                                                                   <---------ARR14(2)                                                                                   ------->TEIL              --------->DAG2                                                       --------->ARR14(2)       --------->LBD16                                                             <---------ARR11(1)       ----------->GT1                                                            <---------ARR14(1)      <---------HSFB2a(2)                                            <---------At4g35610      --------->HSFC1(1)                                             --------->At4g35610      <---------HSFC1(1)                                             --------->ZAT2<-----------ARR10      --------->HSFB2a(2)                                           ----------->RAV1(1)     <---------LBD16                                              --------->At4g35610   <---------AGP1                                      ----------->GT1            <---------CCA1(2)   <---------ARR14(2)                                  ------>ZmHOX2a(2)        --------->RAP2.6(2) <---------MYB46(3)               ---------->DOF2     <------ZmHOX2a(2)    --------->At4g35610 ----------->ARR10         <---------ANAC46          --------->ARR14(2) <---------At4g35610 --------P   ---------->DOF2  ---------->DOF2        <---------ARR14(2) --------->At4g35610 --->DOF2    *TSS       --------->ALFIN1             --------->ARR11(3)----------->RAV1(1)   gggtagttctggaaaaaaagggaatcgtgggggaaagaaagcagagtcgttttcagatcgtgaatagaagcagcagcagaagccgtatctatccctctct  5199100                                                  --------------------->WRI1                                             ------>ZmHOX2a(1)                                         --------->ARR14(2)                                         <---------MYB52(1)                                      --------------->AtSPL3                                      --------------->AtSPL8                                     <---------At5g28300                                    <---------WRKY18(1)                                   --------->WRKY45                                   ----------->HVH21                                   --------->WRKY38(1)                                   --------->WRKY12       --------->YAB1       <-----------GT1                                 <----------DOF2  <----------DOF2          <----------DOF2    ------>ZmHOX2a(1)   ctctctctctctctctctctctctctctctctctactttgaccgttcctcttctttttattcatcaacatcatcgagctttctactacttggattcctac  5199200                                                                                  <---------------AGL15                                                                                  <----------DOF2                                                                                  --------------->AGL15             <---------At4g35610                                   <-----------ARR10             ------>ZmHOX2a(1)                   <-----------------AGL1  ------>ZmHOX2a(1)       <<<<<<<<<TBF1                --------->WOX13(1)             --------->ARR14(2)<---------AHL20(2)    <<<<<<<<<TBF1               --------->WOX13(1)     <-----------RAV1(2)   <----------DOF2 <<<<<<<<<TBF1   <---------GLK1(2)<---------ATHB12 <<<<<<<<<TBF1  <---------CCA1(2)  <---------YAB1   ttcttcttcttcttcctctgattctctcccattccaatcaatctctagggttcttcttcaggtatctcaaatctcctctcttttctttttattgctaacc  5199300              <---------ANAC58              <---------ANAC46                        <---------DAG2              <---------ANAC58                        <----------DOF2             ---------->ID1                    <---------ANAC58         <----------DOF2                       <---------ANAC46               --------->HSFB2a(1) <--      <---------AHL20(2)<---------TOE2(3)      <---------RAP2.6(2)            <---------HSFB2a(1) <--  <------------------------ANAC81              <---------ANAC58     ---------->DOF2               <-- <---------YAB1   <---------YAB1     <---------At4g35610   <-----------GT1  <---------GLK1(2)   xxxxx   attttcatttactttggcttatttttaagtttaatcttcttctgatattgcgtctgcttttttacctctgcaaagacagaacctttctctgtctctctct  5199400             <----------DOF2            <---------DAG2          ------->TEIL         <---------CCA1(2)       --------->TOE1(1)       --------->TOE2(1)      --------------->AtSPL8     <---------ANAC46   ------->TEIL                      ----------------------->TaNAC69(2)  <---------CCA1(2)           --------->ANAC46                                                 ------ -------ANAC58                --------->ANAC58                                  <---------AHL20(2) -------ANAC46                --------->ANAC58      <---------CCA1(2)           --------->AHL20(2) -------ANAC58           --------->ZAT14    <----------DOF2                   --------->TOE2(3)<----- xxxxxxxxxxx>smallRNA(i) --------->ARR14(2)<---------DAG2               <---------YAB1        <------ZmHOX2a(1)   gcttgtaccttgtaccttttctctctgtatacactccattgtctgccttttctcgtctctcttctcttacagtttttattcattaatttctctcgaggat  5199500  Previous    Next  AGI:  At1g15110.1    Description:  phosphatidyl serine synthase family protein. similar to unnamed protein product [Vitis vinifera] (GB:CAO68129.1); similar to hypothetical protein OsI_000142 [Oryza sativa (indica cultivar-group)] (GB:EAY72295.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO42217.1); contains InterPro domain Phosphatidyl serine synthase; (InterPro:IPR004277) Range:  from: 5199013    to: 5202170    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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