Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                               -------->HAHB4                                                             --------->YAB1                                                             <---------ICU4                                                            --------->ICU4                                              --------->TOE2(3)                                       <---------AHL20(2)   <---------YAB1                                ----------->GT1  <---------ICU4                           <---------AHL20(2) <---------------AGL15                           <---------AHL20(1) --------------->AGL15 -----------TGA1           --------->AHL20(2)----------------->AG                                   - ------->ANAC58            --------->AHL20(1)----------------->AGL1    <----------DOF2              < ------->ANAC58         --------->YAB1 --------->AHL20(2)   <---------ATHB12                   <----- ------->ANAC46        <---------AHL20(2)    <-----------------AGL2    <---------DAG2          ------ -->GT1               --------->AHL20(2)<---------AHL20(2) <---------TOE2(3)                   <----- -AGL15            <----------DOF2   --------->YAB1  ----------->GT1<-----------GT1 ---------->DOF2--   aacgtcatagtccctcaatctctttttaataaaatggaatattaatttccataatgggtttaatgatggtttacttttcccaatacaaaagttccatttt  5148800                                                                                                -----                                                                                                <----                                                                                         ------->GAMYB                                                                                        <---------MYB52(2)          --------->ZAT14                 <---------ARR11(3)                            --------->MYB46(3)          <---------ZAT14                 --------->ARR11(3)                       --------->ANAC46      --------->ZAT6                     --------->CCA1(1)                        ------>MYB46(1) -------->AHL20(2)                 --------->YAB1                                 ------>MYB83  ===== ---------AHL20(2)                 --------->AHL20(2)                            ----------->RAV1(1) ----AHL20(1)                   --------->YAB1                        --------->YAB1    <------------MYB.PH3(2) --->AHL20(2)                  <---------AHL20(2)            ----------->GT1    --------->AtMYB61 ----AHL20(2)                 --------->AHL20(2)        <------ZmHOX2a(2)      --------->MYB46(3) ------->AHL20(2)   <---------ANAC55(2)  --------->RVE1(1) ---------->DOF2--------->ANAC46     ------   atttaataagactatactaaatacttaaactttttaataaaaaatatctgtattttagatcaaaagttacaatcacacaaaaccaacacaacaaactcct  5148900               --------->AHL20(2)           ---------->DOF2                                                                      -----      ----------->RAV1(1)                                                                       <----     <----------ID1               <---------ANAC58                                          <--------  --------->DAG2         --------->ZAT6                                                     --------- ---------->DOF2   <---------------AtSPL3   <----------DOF2                                 ========= ->ZmHOX2a(1)----------->GT1      <---------AtLEC2                                       --------->ZAT6 -----------AGL15  --------------->AtSPL8--------->GLK1(2)                          ----------->GT1 ==================================================================================================== --->TOE2(3)--------->DAG2        <---------ANAC58  <---------MYB46(3)            ---------->DOF2   taaaaaagcgacaaaaagtaaattgtaccactagttgcatgacaatctttttagttgttcaaaattgtatgaccatctaaactctaaagtaatactaact  5149000                                                   <---------AHL20(2)      --------->TOE2(3)                           --------->AHL20(2)    --------->AHL20(1)                <---------AHL20(1)    <---------AHL20(1)                <---------ARR11(3)                   <---------------AGL15    --------->ARR11(3)                --------->ARR11(3)    <---------AHL20(2)        <---------ANAC46    --------->ICU4                    <---------AHL20(2)    --------->AHL20(1)        <---------ANAC58    <---------ARR11(3)                --------->AHL20(1)    --------->ARR11(3)        --------->ALFIN1 ---->TOE2(3)             <---------ARR11(3)      <---------AHL20(2)    <-----------GT1 ------DOF2               <---------AHL20(1)  <---------AHL20(2)     <---------ICU4   <---------ANAC58 -------AGL15      --------->DAG2     --------->AHL20(2)    --------->AHL20(2)      <---------ANAC58 ------>AGL15----------->GT1     ==========================================================MADS_MADS ================================================MADS_MADS  <---------ARR11(3)      <---------ANAC46 =======MADS_MADS ---------->DOF2--------------->AGL15      <---------AHL20(1)      <---------ANAC58   ttagaaaatattaatctgtaaaaagctatatattccctaatatattagtttattaatttcaatatattccctaattacaaattttggtgtgtgtgtgatt  5149100                                <---------MYB52(1)       ----------->HVH21                               <-------GAMYB            --------->TOE1(1)                <---------At4g35610                    <---------At4g35610                --------->At4g35610    ----------->RAV1(2)           <----------DOF2   <---------ANAC46       <-------TEIL                                    -       <---------CCA1(2)<---------REM1(1)       <---------YAB1                   <----------DOF2  ---     <---------CCA1(2)  ===========================RAV --------->At4g35610    ------->TEIL       <---   <---------DAG2       <-----------RAV1(1)     <---------ATHB12       <-----------HVH21       ------   --------->TOE2(3)   --------->ARR11(3)    ------>ZmHOX2a(2)        --------->bZIP60(2)    --------   ttcagccttatctctttgagctgtagatgttgctgttagccctctgatccatgattcatcggacatcgagccccatcacgagcctttttattctcaacaa  5149200        <---------AHL20(2)    --------->YAB1    <---------ICU4    <--------HAHB4                                                                                  -   <---------YAB1                                  <---------YAB1       ----------->GT1           ---   --------->ICU4                                ----------->GT1      <---------ANAC58           ==== <---------ICU4                             --------->AHL20(2)        <---------ANAC58           ---- --------->YAB1                            --------->AHL20(1)         ----------->GT1           <---- -------->ICU4                             <---------AHL20(1)         <---------ANAC46 ============== ------>YAB1            ------>MYB46(1)    <---------AHL20(2)       --------->ZAT14    ------>ZmHOX2a(1) ------ATHB51           ------>MYB83       --------->AHL20(2)--------->ALFIN1         --------->TOE2(3) --->YAB1            *TSS  ------>ZmHOX2a(1)<---------AHL20(2)      --------->ZAT18<---------ARR14(2) ---->CBF          <-----------GT1   <-----------GT1  <---------YAB1<---------ZAT14--------->ARR14(2)   taataatcattttttttcttataaccttcctctctatttttacaatttattttgttattagaagtggtagtggagtgaaaaaacaaatcctaagcagtcc  5149300                    --------->GLK1(2)                   --------->ARR11(3)         --------->LBD16        --------->LBD16        --------->ANAC46                            --------->AGP1       --------->HSFB2a(2)                          <---------AGP1       --------->LBD16           --------------->AGL15       <---------HSFB2a(2)       <---------------AGL15           ----------->GT1      <---------LBD16           ----------------->AG--------->ARR14(2)    <------ZmHOX2a(2)           <-----------------AGL2  ----------->RAV1(1)   <---------ARR14(2)           ----------------->AGL3 ----------->HVH21   --------->ARR14(2)           ----------------->AGL1 <---------ETT(1) -------->MYB46(3) <---------ARR11(3)  --------->DAG2<------ZmHOX2a(2) ------>MYB52(1)   <---------GLK1(2)  ---------->DOF2--------->CCA1(2) ==========HOX2a_HOX2a        ------>MYB46(1)       <---------ARR11(3)            <-------TEIL -->ZmHOX2a(1) ---------->DOF2------>MYB83          <---------ARR14(2)           <------ZmHOX2a(2) -----MYB59 --------->At4g35610 ----------------->AGL2------>ZmHOX2a(2)         --------->AGP1      - ==========HOX2a_HOX2a   <-----------GT1          ----------->ARR10       <----------DOF2          --   taaccgatccccgaagctaaagattcttcaccttcccaaataaagcaaaacctagatccgacattgaaggaaaaaccttttagatccatctctgaaaaaa  5149400                                --------->YAB1                                <---------ICU4                             --------->YAB1                             <---------ICU4                            <---------YAB1                          <---------ICU4                          --------->YAB1                         <---------YAB1                       --------->YAB1                       <---------ICU4                <------ZmHOX2a(2)    --------->YAB1  XXXXXXXXXXXXXXXXXXXX>MIR414                                 ------->GAMYB   --------->MYB46(3) <---------YAB1                                           --------->ANAC58   <---------ATHB12 <---------ICU4                                             --------->ANAC58  ------>MYB46(1)   --------->YAB1                    <---------YAB1          --------->RAP2.6(3)  ------>MYB83 <---------ARR11(3)                     --------->ICU4         <---------DOF5.7(2)  -------->P   --------->ARR11(3)       --------->CCA1(2)<---------YAB1      --------->MYB52(1) -------->AtMYB61  <---------YAB1    <---------YAB1 --------->YAB1         --------->At5g28300 ------->MYB46(3)--------->YAB1<---------YAB1      <---------YAB1          --------->DOF5.7(2)    <--   aaccaaccatgaagagagatcatcatcatcatcatcatcaagataagaagactatgatgatgaatgaagaagacgacggtaacggcatggatgagcttct  5149500                           --------->ANAC46                                                       <--                         --------->At4g35610                                                    <----                     <-----------HVH21                                                         <-----                    <------MYB83                 <---------GLK1(2)                             <-----                    <------MYB46(1)         <---------ANAC46           <---------YAB1          ------                   --------->MYB46(2)  <---------REM1(1)    --------->ZAT2                     ------                   --------->MYB59     <-----------RAV1(1)  --------->At4g35610       <---------HSFB2a(2) -------At4g35610<---------MYB52(1)<---------ANAC46      <---------At4g35610    <---------TOE2(3)----   agctgttcttggttacaaggttaggtcatccgaaatggctgatgttgctcagaaactcgagcagcttgaagttatgatgtctaatgttcaagaagacgat  5149600                                                  -------->ABF1                                                  <-------MYC2                                                  <-------PIF5                                                  <-------MYC4                                                  ------->MYC4                                                  ------->PIF5                                                  ------->MYC2                                                  <-------MYC3                         <---------MYB52(1)                                                 --------->ANAC55(2)               ==================                                                 --------->ANAC46                  ------>ZmHOX2a(1)                                                 <---------TGA1a           --------->TOE1(3)                                                 <---------O2              --------->TOE2(3)        --------->ANAC58                         --------->O2            ------>MYB46(1)        --------->ANAC46                      <---------REM1(2)          ------>MYB83 <-----------HVH21        --------->ANAC58                   ================bZIP_DOF     --------->ORA47(1) --------DOF2                        <---------DEAR3(1) XXXXXXXXXXXXXXXXXXXX>MIR778================== --ZmHOX2a(2)                       <---------LBD16   <---------ANAC58 <---------MYB46(2) ----ARR14(2)                      --------->LBD16------->MYC3         --------->MYB46(3) ----ARR11(3)                    <---------LBD16 --------->TGA1a       --------->DEAR4(1) --->ARR11(3)          <---------ZAT14     <----------DOF2             --------->DEAR3(1)          -- --->ARR14(2)          <---------ZAT18 <------NtERF2  <---------ANAC58 --------->DREB2C(2)        --- -->ZmHOX2a(2)         --------->ZAT14--------->LBD16 <---------ANAC46--------->DEAR3(2)    ---------   ctttctcaactcgctactgagactgttcactataatccggcggagctttacacgtggcttgattctatgctcaccgaccttaatcctccgtcgtctaacg  5149700  Previous    Next  AGI:  At1g14920.1    Description:  GAI (GA INSENSITIVE); transcription factor. Identical to DELLA protein GAI (GAI) [Arabidopsis Thaliana] (GB:Q9LQT8;GB:O23643;GB:O23724); similar to RGA1 (REPRESSOR OF GA1-3 1), transcription factor [Arabidopsis thaliana] (TAIR:AT2G01570.1); similar to DELLA protein RGA1 (RGA-like protein 1) (BrRGA1) (GB:Q5BN23); similar to DELLA protein GAI [Gossypium barbadense] (GB:ABG26370.1); similar to DELLA protein RGA2 (RGA-like protein 2) (BrRGA2) (GB:Q5BN22); contains InterPro domain GRAS transcription factor (InterPro:IPR005202) Range:  from: 5149221    to: 5151349    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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