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Chromosome 1
Chromosome 2
Chromosome 3
Chromosome 4
Chromosome 5
Position
Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
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1 10 20 30 40 50 60 70 80 90 100
--------->
GLK1(1)
<---------
ARR14(2)
--------->
ARR14(2)
<-----------
ARR10
-
<---------
LBD16
--------->
GLK1(1)
-
<----------
DOF2
<---------------
AGL15
<---------
CCA1(2)
<
------>
ARR11(3)
<---------
TOE2(3)
--------->
ZAT18
--------->
ANAC58
<
------>
GLK1(2)
<------
ZmHOX2a(1)
--------->
CCA1(2)
--------->
ANAC58
<--
-------
ARR11(3)
<---------
LBD16
----------------->
AGL3
--------->
ANAC46
<---------
ATHB12
aatcttttgggggtttttttctcaggaaattaagaaaacccaattgaagaaacgagcactaaacatataaaaaaaactcgcaaatctacagaaatcatct
4964000
---------->
DOF2
--------->
YAB1
<xxxxxxxxxxxxxxxx
smallRNA(s)
<------
ZmHOX2a(2)
<xxxxxxxxxxxxxxxx
smallRNA(i)
<-------
TEIL
--------->
WRKY12
--------->
CCA1(2)
--------->
WRKY38(1)
--------->
ARR14(1)
<---------
ZAT2
--------->
ANAC58
-------->
ARR11(1)
<---------
At4g35610
--------->
ANAC58
-------->
ARR14(2)
--------->
ZAT2
--------->
ANAC46
---------
ARR14(2)
--------->
At4g35610
--------->
AGP1
---------
GLK1(2)
---------->
DOF2
----------->
HVH21
--------->
ZAT2
---------->
DOF2
-------
TOE2(3)
----------->
GT1
<------
ZmHOX2a(2)
--------->
At4g35610
aagattcgatcaaaagaaacagagtaaatagagaaagagagatcgagctgac
cagtagagagagccttgatgagaccagctctacgaccacgaaagtcgc
4964100
---------->
DOF2
<---------
GLK1(1)
--------->
ANAC58
--------->
GLK1(1)
--------->
ANAC58
<---------
At4g35610
---------->
DOF2
<---------
At4g35610
----------->
HVH21
--------->
At4g35610
<---------
ANAC58
--------->
At4g35610
<-----------
GT1
<------
ZmHOX2a(1)
<---------
ANAC58
<----------
DOF2
------->
TEIL
-
taaaaacctcttcgacagtgcgaggtataggatgctgaattccttccat
agtattgcttcaaaagccaaagactttcacagatgagaatgaatcagcctc
4964200
------>
ZmHOX2a(2)
<------
ZmHOX2a(2)
<----------
DOF2
--------->
ARR11(3)
--------------->
AGL15
<---------
ARR11(3)
<---------------
AGL15
<---------
ARR14(2)
----------------->
AG
--------->
ARR14(2)
<-----------------
AGL1
----------->
ARR10
----------------->
AGL1
-
--------->
ANAC58
<-----------------
AG
-------
<----------
ID1
---------->
ID1
<-------
--------->
ANAC58
<-----------
GT1
<-------
--------->
DOF2
<-------
TEIL
---------->
DOF2
<----------
DOF2
<--------
accaaagaatgcttccaagtatcgagatgcactcagaaacaaaaaagccaagatcggctttttagtttttccttttgagggaattttgtatagttcgggg
4964300
<---------
LBD16
-----
<---------
AHL20(2)
---------
--------->
GLK1(1)
--------->
AHL20(1)
----------
---------->
GT1
--------->
AHL20(2)
<----------
ID1
-->
LBD16
<---------
AHL20(1)
--------->
At4g35610
---------->
DOF2
--
LBD16
<---------
AHL20(2)
<---------
At4g35610
--------->
TOE1(3)
--
ANAC46
<------
ZmHOX2a(1)
--------->
ZAT2
--------->
TOE2(3)
-
LBD16
<---------
LBD16
<---------
AHL20(2)
<---------
ZAT2
-----------------------
gagagtgaaatctataaactttcggaggaatttatttcatttggggaaattgagaagagagagctgtgctaagaaaaaaaaaccctaaaaacgaaaagga
4964400
<----------
ID1
----->
DOF2
<------------
CBF
>
DAG2
*
TSS
--------->
ATHB12
<---------
ARR11(3)
>
DOF2
---------->
DOF2
--------->
ARR14(2)
<----------
ID1
<---------
DAG2
->
ANAC81
<---------
ARR14(2)
---------->
DOF2
<----------
DOF2
---------->
DOF2
aaggagacaaaagacaatttgag
ggatttggaagcattggaagaatagattaaagcgacaacatctcaactttttttttttttttttaaagtcacaacct
4964500
--------->
LBD16
<---------
HSFB2a(2)
<---------
AHL20(2)
--------->
AHL20(2)
------>
ZmHOX2a(1)
--------->
AHL20(2)
----------->
RAV1(2)
--------->
AHL20(2)
<----------
DOF2
<-----------
GT1
<---------
AHL20(2)
--------->
DAG2
<----------
DOF2
--------->
AHL20(2)
---------->
DOF2
<----------
DOF2
<---------
DAG2
<<<<<<<<<
GATA-1
--------->
HSFB2a(2)
<---------
DAG2
--------->
ZAT18
<-----------
GT1
--------->
ANAC46
<-----------
GT1
<---------
ZAT18
gtatttatctatttatttaattcactccagaaatataaagtcgttttacttttcttttgttttgggtcaatatttatgtgcgcttttttttcctgaggca
4964600
<
<
<-
--------->
ZAT18
--
--------->
ZAT14
<---------
ARR11(1)
--------->
TOE2(3)
<---------
ARR14(2)
--------->
ICU4
<---------
TOE1(3)
<---------
ARR11(3)
--------->
YAB1
<---------
TOE2(3)
--------->
ARR14(2)
----------->
GT1
<-----------
GT1
----------------->
AG
--------->
MYB52(1)
--------->
MYB52(1)
<-----------
GT1
--
------->
GAMYB
<---------
DOF5.7(2)
--------->
YAB1
<-
--------->
MYB46(3)
--------->
At5g28300
<---------
WOX13(1)
<---------
YAB1
<------
ZmHOX2a(2)
<---------
MYB52(2)
----------->
GT1
<---------
YAB1
<---------
ZAT14
<---------
CCA1(2)
--------->
HSFB2a(2)
--------->
YAB1
<---------
At5g28300
--------------->
AtSPL3
---------
<---------
HSFB2a(2)
-------->
HAHB4
<-----------
GT1
--------------->
AtSPL8
<---------
ETT(2)
tgttctacaacgaactgaagtaataatacagtaaatttctgccagttttactgtgattaacgtttaagaactgtactataatatccatatctgtcgatca
4964700
<---------
ICU4
--------->
ATHB12
<---------
YAB1
--------->
DAG2
--------->
ICU4
-
---------
YAB1
--------->
YAB1
---------
---------
AHL20(2)
<---------
ICU4
<---------
ICU4
--------
AHL20(2)
--------->
AHL20(1)
-------->
HAHB4
------->
AHL20(2)
--------->
YAB1
--------->
YAB1
------->
AHL20(1)
--------->
AHL20(2)
--------->
ICU4
--------
AHL20(1)
--------->
AHL20(2)
--------->
GLK1(2)
<---------
ATHB51
>
WOX13(1)
--------->
ICU4
--------->
ICU4
<-----------
GT1
----------->
GT1
-----
atataatggaaaggctaaagattaaaaaaaaataatgattttaaacaaaattgatggttttacaatattctgtcattaatctctagttaataatgagtta
4964800
<---
<---------
TOE2(3)
----------->
GT1
<---------
TOE1(3)
<---------------
AGL15
<---------
MYB52(1)
<-
--------------->
AGL15
<---------
At4g35610
<---------
DOF5.7(2)
-------->
YAB1
<---------
ANAC46
<----------
DOF2
--------->
DOF5.7(2)
<
-->
GT1
--------->
YAB1
--------->
TOE2(3)
--------->
ARR11(3)
--------->
TOE2(3)
----
---->
AHL20(2)
---------->
DOF2
--------->
YAB1
<---------
ARR11(3)
<---------
AHL20(2)
<------
aattatactactaatagttaaaaagaatgcttcaagcttaataccgtagagagagcgagggtctttatctgatttgtttaatcgttaatgttttttgtta
4964900
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AGI:
At1g14510.1
Description:
PHD finger family protein. similar to PHD finger family protein [Arabidopsis thaliana] (TAIR:AT2G02470.1); similar to PHD5 [Glycine max] (GB:ABI97244.1); contains InterPro domain Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); contains InterPro domain Zinc finger, PHD-type; (InterPro:IPR001965); contains InterPro domain Zinc finger, FYVE/PHD-type; (InterPro:IPR011011)
Range:
from: 4961881
to: 4964423
Orientation: Reverse
Links:
TAIR
MIPS
Please cite the corresponding
publications
when using AthaMap.
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