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Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
 
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                                                                                        --------->GLK1(1)
                                                                               <---------ARR14(2)
                                                                               --------->ARR14(2)
                                                                               <-----------ARR10   -
    <---------LBD16                                                           --------->GLK1(1)    -
<----------DOF2                     <---------------AGL15                     <---------CCA1(2)    <
------>ARR11(3)             <---------TOE2(3)      --------->ZAT18        --------->ANAC58         <
------>GLK1(2)       <------ZmHOX2a(1)        --------->CCA1(2)           --------->ANAC58       <--
-------ARR11(3)   <---------LBD16  ----------------->AGL3                 --------->ANAC46<---------ATHB12
 
aatcttttgggggtttttttctcaggaaattaagaaaacccaattgaagaaacgagcactaaacatataaaaaaaactcgcaaatctacagaaatcatct  4964000
        ---------->DOF2
      --------->YAB1                               <xxxxxxxxxxxxxxxxsmallRNA(s)
     <------ZmHOX2a(2)                             <xxxxxxxxxxxxxxxxsmallRNA(i)
 <-------TEIL                               --------->WRKY12
--------->CCA1(2)                           --------->WRKY38(1)
--------->ARR14(1)                        <---------ZAT2                              --------->ANAC58
-------->ARR11(1)                         <---------At4g35610                         --------->ANAC58
-------->ARR14(2)                         --------->ZAT2                              --------->ANAC46
---------ARR14(2)                         --------->At4g35610              --------->AGP1
---------GLK1(2)             ---------->DOF2----------->HVH21             --------->ZAT2---------->DOF2
-------TOE2(3)    ----------->GT1     <------ZmHOX2a(2)                   --------->At4g35610
 
aagattcgatcaaaagaaacagagtaaatagagaaagagagatcgagctgaccagtagagagagccttgatgagaccagctctacgaccacgaaagtcgc  4964100
                                                               ---------->DOF2
                                  <---------GLK1(1)        --------->ANAC58
                                  --------->GLK1(1)        --------->ANAC58
                             <---------At4g35610         ---------->DOF2    <---------At4g35610
        ----------->HVH21    --------->At4g35610    <---------ANAC58        --------->At4g35610
<-----------GT1           <------ZmHOX2a(1)         <---------ANAC58 <----------DOF2   ------->TEIL-
 
taaaaacctcttcgacagtgcgaggtataggatgctgaattccttccatagtattgcttcaaaagccaaagactttcacagatgagaatgaatcagcctc  4964200
                                                  ------>ZmHOX2a(2)
                                                 <------ZmHOX2a(2)  <----------DOF2
                                                --------->ARR11(3) --------------->AGL15
                                                <---------ARR11(3) <---------------AGL15
                                                <---------ARR14(2)----------------->AG
                                                --------->ARR14(2)<-----------------AGL1
                                              ----------->ARR10   ----------------->AGL1           -
                                         --------->ANAC58         <-----------------AG       -------
                                         <----------ID1          ---------->ID1             <-------
                                         --------->ANAC58       <-----------GT1             <-------
--------->DOF2          <-------TEIL   ---------->DOF2<----------DOF2                      <--------
 
accaaagaatgcttccaagtatcgagatgcactcagaaacaaaaaagccaagatcggctttttagtttttccttttgagggaattttgtatagttcgggg  4964300
                                      <---------LBD16                                          -----
                            <---------AHL20(2)                                             ---------
    --------->GLK1(1)      --------->AHL20(1)                                             ----------
---------->GT1             --------->AHL20(2)                                          <----------ID1
-->LBD16                   <---------AHL20(1)             --------->At4g35610      ---------->DOF2
--LBD16                    <---------AHL20(2)             <---------At4g35610  --------->TOE1(3)
--ANAC46               <------ZmHOX2a(1)                  --------->ZAT2       --------->TOE2(3)
-LBD16           <---------LBD16<---------AHL20(2)        <---------ZAT2     -----------------------
 
gagagtgaaatctataaactttcggaggaatttatttcatttggggaaattgagaagagagagctgtgctaagaaaaaaaaaccctaaaaacgaaaagga  4964400
<----------ID1
----->DOF2                     <------------CBF
>DAG2                 *TSS    --------->ATHB12            <---------ARR11(3)
>DOF2---------->DOF2 --------->ARR14(2)            <----------ID1 <---------DAG2
->ANAC81             <---------ARR14(2)        ---------->DOF2    <----------DOF2  ---------->DOF2
 
aaggagacaaaagacaatttgagggatttggaagcattggaagaatagattaaagcgacaacatctcaactttttttttttttttttaaagtcacaacct  4964500
                        --------->LBD16
                       <---------HSFB2a(2)
             <---------AHL20(2)
             --------->AHL20(2)                                                          ------>ZmHOX2a(1)
            --------->AHL20(2)                                                         ----------->RAV1(2)
         --------->AHL20(2)                  <----------DOF2                         <-----------GT1
         <---------AHL20(2)      --------->DAG2                                <----------DOF2
        --------->AHL20(2)      ---------->DOF2   <----------DOF2              <---------DAG2
   <<<<<<<<<GATA-1     --------->HSFB2a(2)   <---------DAG2                --------->ZAT18
  <-----------GT1   --------->ANAC46      <-----------GT1                  <---------ZAT18
 
gtatttatctatttatttaattcactccagaaatataaagtcgttttacttttcttttgttttgggtcaatatttatgtgcgcttttttttcctgaggca  4964600
                                                                                                   <
                                                                                                   <
                                                                                                  <-
                                                                    --------->ZAT18               --
                                                                    --------->ZAT14 <---------ARR11(1)
                                                         --------->TOE2(3)          <---------ARR14(2)
                   --------->ICU4                      <---------TOE1(3)            <---------ARR11(3)
                 --------->YAB1                        <---------TOE2(3)            --------->ARR14(2)
              ----------->GT1                         <-----------GT1           ----------------->AG
        --------->MYB52(1)                            --------->MYB52(1)      <-----------GT1     --
       ------->GAMYB                                  <---------DOF5.7(2)  --------->YAB1         <-
      --------->MYB46(3)  --------->At5g28300       <---------WOX13(1)    <---------YAB1     <------ZmHOX2a(2)
      <---------MYB52(2) ----------->GT1         <---------YAB1     <---------ZAT14<---------CCA1(2)
 --------->HSFB2a(2)--------->YAB1           <---------At5g28300  --------------->AtSPL3   ---------
 <---------HSFB2a(2)-------->HAHB4          <-----------GT1       --------------->AtSPL8  <---------ETT(2)
 
tgttctacaacgaactgaagtaataatacagtaaatttctgccagttttactgtgattaacgtttaagaactgtactataatatccatatctgtcgatca  4964700
                                <---------ICU4
                                --------->ATHB12
                               <---------YAB1
       --------->DAG2          --------->ICU4                                                      -
---------YAB1                --------->YAB1                                                ---------
---------AHL20(2)            <---------ICU4                                            <---------ICU4
--------AHL20(2)           --------->AHL20(1)                                          -------->HAHB4
------->AHL20(2)          --------->YAB1                                               --------->YAB1
------->AHL20(1)        --------->AHL20(2)                                            --------->ICU4
--------AHL20(1)  --------->AHL20(2)                           --------->GLK1(2)      <---------ATHB51
>WOX13(1)     --------->ICU4--------->ICU4              <-----------GT1         ----------->GT1-----
 
atataatggaaaggctaaagattaaaaaaaaataatgattttaaacaaaattgatggttttacaatattctgtcattaatctctagttaataatgagtta  4964800
                                                                                                <---
                                                                                   <---------TOE2(3)
           ----------->GT1                                                         <---------TOE1(3)
    <---------------AGL15                                                       <---------MYB52(1)<-
    --------------->AGL15                                      <---------At4g35610<---------DOF5.7(2)
-------->YAB1                           <---------ANAC46   <----------DOF2      --------->DOF5.7(2)<
-->GT1  --------->YAB1          --------->TOE2(3)       --------->ARR11(3)     --------->TOE2(3)----
---->AHL20(2)    ---------->DOF2--------->YAB1          <---------ARR11(3)<---------AHL20(2) <------
 
aattatactactaatagttaaaaagaatgcttcaagcttaataccgtagagagagcgagggtctttatctgatttgtttaatcgttaatgttttttgtta  4964900
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AGI:  At1g14510.1   
Description:  PHD finger family protein. similar to PHD finger family protein [Arabidopsis thaliana] (TAIR:AT2G02470.1); similar to PHD5 [Glycine max] (GB:ABI97244.1); contains InterPro domain Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); contains InterPro domain Zinc finger, PHD-type; (InterPro:IPR001965); contains InterPro domain Zinc finger, FYVE/PHD-type; (InterPro:IPR011011)
Range:  from: 4961881    to: 4964423    Orientation: Reverse
Links:  TAIR  MIPS 
 
 
Please cite the corresponding publications when using AthaMap.

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