Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                         <---------YAB1                                   <---------ANAC58                            <----------DOF2                                 --------->At4g35610      --------->YAB1       ------>ZmHOX2a(2)                            ------>ZmHOX2a(2) -------->At5g28300      --------->ARR11(3)                           <---------ARR11(3)<---------ARR11(3) --------->GT1           <---------ARR11(3)     <----------DOF2       --------->ARR11(3)--------->ARR11(3) -------AGL15    --------->ARR11(3)<---------ANAC58          ----------->RAV1(1)   --------->AHL20(2)   atggtaaatcatagtgaaacatctactgatctttctagcttatgactctggtttatgggaagacaacatagtgatctcatcagaaaaaaatgtcttcagg  4948000                                                                     <----------DOF2                                                                   =================HOX2a_HOX2a                                                                   <---------RVE1(1)                                                                   <------ZmHOX2a(2)                                                                  <-----------ARR10                                                                  --------->ARR11(3)                                                                  --------->ARR14(3)                                                                  --------->ARR14(2)                                  <------MYB83                    <---------ARR14(2)                                  <------MYB46(1)                 <---------ARR11(3)                                  <---------ANAC46                --------->GLK1(2)                                 <---------AtMYB61                <---------ARR14(3)                                 --------->ALFIN1                <------ZmHOX2a(1)                          <---------ANAC58                    <------ZmHOX2a(1)                          <---------ANAC58                    =============HOX2a_HOX2a                          <---------ANAC46                  --------->ALFIN1                       <---------RAP2.6(2)                 <------ZmHOX2a(1)                      <---------At4g35610                  ===============HOX2a_HOX2a                      --------->At4g35610             ------>ZmHOX2a(1)      <------ZmHOX2a(1)                     <---------DOF5.7(2)              --------->HSFB2a(2) <-----------RAV1(2)                     --------->MYB52(2)               =====================HOX2a_HOX2a                   <---------MYB52(1)<---------MYB46(3)    ================HOX2a_HOX2a             <-                   --------->DOF5.7(2)                <---------HSFB2a(2) ===========================                ---------->ID1 <---------ANAC58       ====================HOX2a_HOX2a       <--------            <---------ANAC58   <---------ANAC46      <---------LBD16------>ZmHOX2a(2)     <----------            <---------ANAC58   <---------ANAC58     <---------ANAC46================HOX2a_HOX2a   <--   cataaacatggtgttcttgtcgttagcggcttggcttggtggatgatgaccatgtcctggaggaggaggatcttttgcaggagaagatggaactgttggg  4948100                                                                                          --------->MYB52(1)                                                                                         <---------WRKY12                                                                                         <---------ZAT14                                                                                         <---------WRKY38(1)                                                                                        ----------->HVH21                                                                                      <---------DEAR3(2)        --------->ALFIN1                                                             <---------At1g77200        <---------AtMYB61                                                            <---------DEAR3(1)     ------>ZmHOX2a(1)                                --------->CCA1(2)           <---------ANAC46 ---------DOF2                    <------ZmHOX2a(1)  --------->ARR14(2)           <---------ANAC58 =RAV<-----------RAV1(1)    <---------LBD16          <---------ARR14(2)           <---------ANAC58 -MYB52(1)            --------->YAB1                 --------->ARR11(3)        <---------MYB52(1) -RAV1(1)<---------MYB46(3)----------->RAV1(2)      <------ZmHOX2a(1)     <-----------GT1--------->ZAT14 -------DAG2         <---------YAB1              <------ZmHOX2a(1)      <---------AHL20(2)<---------DOF5.7(2)   ccttttcctggtggtgaatgaccatgataacctggaggagtatgttttgaaggaggatatggaactgtttggattttatcggtttcgtcggtgaacggtc  4948200                  <---------YAB1               <---------MYB52(1)                                          <---------ANAC58              <-------GAMYB                                                <---------ANAC58              --------->At5g28300                                     <---------ICU4       <---------ANAC58             <---------MYB46(3)                                       --------->ATHB12     <---------ANAC46             ----------->GT1>>>>>>>>>TBF1                            <---------YAB1        <---------ANAC58            <---------DEAR3(1)                --------->ATHB12       --------->ICU4   <---------At4g35610           <---------ORA47(1)                <---------YAB1   --------->ARR11(3)      --------->At4g35610      <---------ANAC46   >>>>>>>>>TBF1     --------->YAB1     <---------ARR11(3)<---------MYB46(3)---   tggcaattgtttggacggttattagaagaagaagaaacagagcaatcttcattgtttttgcagagaacttcatgatttcttgttgttgagcttacttgta  4948300                                              <---------AtMYB61                   ----------->GT1                                            <----------DOF2                   >>>>>>>>>GATA-3    <---                                           <---------ANAC58                   >>>>>>>>>GATA-4  *TSS                                           <---------ANAC58                   >>>>>>>>>GATA-1 -------            ----------->GT1        <---------WOX13(1)                         >>>>>>>>>GATA-2 <------   <---------ARR14(2)            --------->ATHB12                          --------->ALFIN1  <------- -------->GT1                   <---------ATHB12      <-------TEIL      <---------AtMYB61    <-------   ttgtatatatggatttgtaatttgtatgtagccagtgattgttttgctttggtgagttcatgtgagtataagtagaggtggattgagtaaaatcgatatc  4948400                                                         --------->ANAC55(2)                                                  <---------------AGL15                                                  --------->TOE2(3)               <---------MYB59                                                  --------------->AGL15      <---------WRKY38(1)                                                  <---------MYB59         <------MYB83 <---------ICU4                                                 ====================================================                                                 ----------------->AGL3   <------MYB46(1)                                                 <-----------------AGL3   ----------->GT1<---------YAB1    <------------CBF                             ----------------->AGL1  <---------AtMYB61  <---------YAB1                                 <-----------------AGL1  <---------MYB46(3) -------DOF2                                     <---------ANAC55(2)    <--------P--------->TOE1(3) -->ARR11(3)                                     ----------------->AG  <-------GAMYB  --------->ICU4 ---ARR11(3)                                     <-----------------AG <---------MYB46(3) <---------AHL20(2) --GLK1(1)              <-----------GT1<----------DOF2   <---------ANAC55(2)--------->WRKY18(1) --CCA1(2)    ------------>CBF ------------>CBF<-----------GT1 <---------AHL20(2) --------->TOE2(3)   tttgaagattgaattagtcaatagtttcacttattcaatctctttgttgttacctaaataggtatttttttttggttggtcaaacctaaatattatttct  4948500                               >>>>>>>>>>WRKY43                               >>>>>>>>>>WRKY26                               >>>>>>>>>>WRKY38                               >>>>>>>>>>WRKY6             ---------->DOF2   >>>>>>>>>>WRKY11         --------->TOE2(3)     <---------WRKY18(1)         --------->TOE1(3)    --------->WRKY12  --------->AHL20(2)        <---------------AGL15 --------->WRKY38(1)                                --------->MYB46(3)      <-----------GT1         --------->WRKY45 <---------AHL20(2)         --------->AHL20(2) <---------RVE1(1)       ---------->DOF2    --------->AHL20(2)      <----------DOF2 =======================MADS_MADS          --------->AHL20(2)       <---------DAG2   gtgatattttaccttaaaagaaattttaaaagttgaccaaaaacaataaataatataaacaaatactaaactttttttatataacaaacaaatactagta  4948600                                                           <---------AHL20(2)                                                      --------->AHL20(1)                                     <---------YAB1   <---------AHL20(1)                                    --------->YAB1   --------->YAB1                                    <---------AHL20(2)<---------AHL20(2)                          ---                                    --------->AHL20(2)--------->AHL20(2)                 <-----------GT1                              <---------DAG2         --------->AHL20(2)   <---------At4g35610<-------                              <----------DOF2     <---------ICU4 ------->TEIL  <----------DOF2   <---                   <---------YAB1 <---------YAB1 --------->ICU4 <---------CCA1(2)   --------->ANAC55(2)   ttctactaacttgatacaagtatgaaaaatcgctttattaatattctcgtaagaattatattatatgtatctagtaagatgcttttacatatttctgctc  4948700                                               <--------HAHB4                                               --------->YAB1                                               <---------ICU4                                              --------->ICU4                                              <---------YAB1  --------->TOE1(1)                         <---------ICU4                                         --  --------->TOE2(1)         --------->LBD16 --------->YAB1                               --------->ANAC46 ------>ZmHOX2a(1)      <---------ARR14(2) <---------ATHB12                           <-------TEIL -- --->ZmHOX2a(1)         --------->ARR14(2) --------->ICU4                   ------>ZmHOX2a(1)-------- --At4g35610      --------->ANAC58 <---------ICU4    --------->YAB1     --------->ARR14(2)   -------- ------ALFIN1     --------->ANAC58<---------YAB1    <---------YAB1      <---------ARR14(2) ----------   ctcctcgtatatatgtaggcaggcactatccgtataatttttgcaataatcattttcataaatgtttcgaaacaaatcctccaatacatacactaaagca  4948800                                          <-----------GT1                                       <---------ICU4                                      --------->AHL20(2)                                           <-     --------->At5g28300              --------->AHL20(1)                                        <----    ----------->GT1                   <---------AHL20(2)                                        <---- ------->AHL20(2)           --------->ZAT18                 --------->ANAC55(2)              <------- -------->DOF2          --------------->AtSPL8       <---------YAB1                         --------- ->ANAC58         --------->YAB1     --------->AHL20(2)   <---------AHL20(2)                <-------- ->ANAC58 <---------DAG2<---------------AtSPL8 <---------ARR11(3)                  --------->TOE2(3) >DOF2    <----------DOF2   <---------ZAT14    <-----------ARR10         --------->YAB1     <--------   ataaaacagtaacttttctatcaaattgagtactctaaaaaaaattacaaatcttatcatttacttattttgctatcaaattcaacattagcatataatt  4948900  Previous    Next  AGI:  At1g14455.1    Description:  unknown protein Range:  from: 4947814    to: 4948395    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At1g14460.1    Description:  DNA polymerase-related. similar to STI (STICHEL), ATP binding / DNA binding / DNA-directed DNA polymerase [Arabidopsis thaliana] (TAIR:AT2G02480.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN80768.1); similar to Os12g0209300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001066394.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO46929.1); contains InterPro domain DNA polymerase III clamp loader subunit, C-terminal; (InterPro:IPR008921); contains InterPro domain AAA+ ATPase, core; (InterPro:IPR003593); contains InterPro domain AAA ATPase, core; (InterPro:IPR003959); contains InterPro domain DNA polymerase III, subu Range:  from: 4948743    to: 4952922    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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