Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                  ---------->DOF2                                                                          <---------AHL20(2)                           <-----------GT1                              <---------AHL20(2)                       -------->ATHB1                                  <---------AHL20(1)          <-          <---------AHL20(2)  <----------DOF2                          --------->AHL20(1)          --  ----------->GT1      --------->ATHB51            --------->MYB52(1)--------->AHL20(1)<---------AHL20(2) ------>GAMYB          --------->ATHB12   <---------ICU4             <---------AHL20(1)--------->AHL20(2) ------->RAV1(1)      <---------YAB1--------->ANAC46                --------->AHL20(2) --------->YAB1   aacagagtatatataatccagcgtattattgactttatactcaaatattgcattaacagaaaaatgcaaaatatatattttttaaagaattatatgtgaa  4872500                      --------->ARR11(3)             --------->YAB1            ----------->GT1                                      ----------->TGA1            <---------YAB1                             <---------YAB1          -------->HAHB4          --------->ICU4     <---------AHL20(2)                            <-          <---------ICU4         <---------TOE2(3)  --------->AHL20(2)                           ----          --------->YAB1        ---------->DOF2     --------->ICU4--------->MYB52(1)        ---------         --------->ICU4        <---------AHL20(2) <---------ICU4 ----------->HVH21   --------->TOE1(2)         <---------ATHB51      --------->AHL20(2)--------->ICU4 <---------MYB52(2) <------ZmHOX2a(2)       --------->YAB1 <---------ARR11(3)    ----------->GT1    --------->At4g35610--------->ARR11(3) ----------GT1     <---------AHL20(2)      --------->DAG2      <---------At4g35610<---------ARR11(3) ------->MYB52(1)  --------->AHL20(2)     ---------->DOF2 <---------TOE2(3)   ---------->DOF2<-------   ataacagtttaataatgaaaataaaatctaaaattaaagattagaaaagtaatatttattatggaaactgacgagttttgaaaagatcatgggattaaat  4872600                                           --------->YAB1                                         --- --------ANAC46                         --------->YAB1           ---------->DOF2                  --- ------->GT1      --------->ANAC46     <---------YAB1           <---------AHL20(2)               ---- >AHL20(2)---------->ID1              --------->AHL20(2)        --------->AHL20(2)              ----- --AHL20(2)     <-----------GT1      --------->YAB1      ----------->GT1           <-----------HVH21   ggtgtattatttgtagttatacgacttggttttttaaaattataatcaaaaacaacatgttgttaattaaagaggtactagatgctgtcagaaatagacc  4872700                                                                 ----------->TBP                <----                                                           --------->MYB46(3)     <---------MYB52(1)                                                          <---------At4g35610    <---------RAP2.6(3)                                                         <---------DOF5.7(2)   <------NtERF2    -----                                                         --------->MYB52(1)   ------>NtERF2     <----                                      <---------MYB52(1)<---------WRKY12     <---------ARR14(2) =====   ---------->DOF2                   <---------RAP2.6(3)<---------WRKY38(1)  --------->ARR14(2) ----- --->MYB46(1)                       ----------->GT1     <---------WRKY45   ------->GAMYB<----------DOF2 --->MYB83                         <------NtERF2      <-----------HVH21 --------->MYB52(1)      ===== ------->RAV1(1)          --------->ZAT6 <---------YAB1--------->WRKY18(1) ========================== ---->AtMYB61   <----------DOF2 <------ZmHOX2a(1)--------->ARR11(3)   <---------MYB52(2)=============   aacaaaaaagagagactactttagattaccactaggagccgttatacttaagttctggtcaacggctatataactaacggagccgttagtcttttcagac  4872800      <----------DOF2                            ------>NtERF2    <---------YAB1                             --------->LBD16   <---------ARR11(3)--------->ANAC58         <---------ANAC58 <---------MYB52(1)---------->DOF2            <---------LBD16 --------->DOF5.7(2) --------->ANAC58         <---------ANAC58 -----TGA1a --------->LBD16                   --------->HSFB2a(2) ---->TGA1a--------->LBD16                   <---------LBD16 -----O2   --------->ANAC46               <---------GLK1(1) ================bZIP_DOF                 --------->GLK1(1)   <----------DOF2 ---->O2  <---------LBD16               --------->ATHB12   --------->GLK1(2) ================bZIP_DOF            <---------ANAC58      --------->ARR11(3)        <---------At4g35610 =====MYC_MYB    --------->YAB1      <---------ANAC58      <---------ARR11(3)        --------->At4g35610 =====bZIP_DOF  ----------->TBP  <---------MYB52(1)*TSS--------->YAB1       <----------DOF2   gtcgttatctttcccgctataaaaagccattttccattagcttgatttccgggccaaacaaaatcttttgtgaagaaactttctctcatcttcccaaggg  4872900                                                                --------->At4g35610          --------                                                                <---------At4g35610          --------                                                                --------->ZAT2               --------                                                                <---------ZAT2             <---------DOF5.7(2)                                                         <---------RVE1(1)               --------->DOF5.7(2)                            <---------CCA1(2)           --------->ARR14(2)           <---------At5g28300                          <---------ANAC58              <---------ARR14(2)          <-----------GT1                          <---------ANAC58              <---------MYB52(1)      <---------ARR11(3)                          <---------ANAC46             <---------RAP2.6(3)      --------->ARR11(3)                        <-----------GT1          <---------ANAC58               <-----------ARR10                    <----------DOF2              <---------ANAC58         ----------->GT1<-----------HVH21   agagagcaaataccaaaaacttctttttgcgtctctcttctaacattccttccttgccgatatttcagctcacgacgagaaaaatctcaccgttcacgct  4873000                                      <------MYB46(1)                                      <------MYB83                                     --------->MYB59                                    <---------ARR14(2)                                  --------->ARR14(2)                                    --------->ARR14(2)                                  --------->ARR11(1)                           <----------DOF2                                  <---------ARR14(2)                      <----------DOF2                               <---------HSFB2a(2)                       ------>ZmHOX2a(2) --------->ANAC55(2)                               --------->HSFB2a(2)                       <---------ICU4 <---------GLK1(2)                               <---------------AGL15                   --------->ARR11(3)  <---------ANAC55(2)                              <-----------------AGL3               ------>ZmHOX2a(2)--------->HSFB2a(2)                              <-----------------AG               <---------ARR11(3) <---------LBD16                              <-----------------AGL1             --------->ARR11(3) <---------HSFB2a(2) <-------TEIL                 <-----------------AGL2       --------->GLK1(2)   <---------DAG2      -- ->ANAC46            <---------AHL20(2)                    --------->ARR11(3) <---------ANAC58  ----- ->ANAC58     <---------At4g35610 <---------GLK1(2)        <---------ARR11(3) <---------ANAC58  ----- ->ANAC58   <-----------RAV1(2)--------------->AGL15   --------->LBD16 <---------ARR11(3) <-------TEIL   atatacatctatttgcaggtgattttttttcttctagatttggtatctcgttttctccgaaaatctcgatcttgatctttgcttttctcggattcgtaac  4873100 ------->MYC2                              <---------ANAC58 <-------MYC3                              <---------ANAC58                                         < ------->MYC3                              <---------ANAC46                                         - <-------MYC2                             ---------->ID1                                           <- ----->TEIL                       <---------ANAC58             <---------ANAC46                    -- ---->ANAC58    <-------TEIL      <---------ANAC58             <---------ANAC58           --------->At4g35610 ---->ANAC58 <---------ZAT6     --------->ARR11(3)             <---------ANAC58           <---------At4g35610   gcatgtgtctgattagagttcatatacttgtgaatttcttgtttttcgtatttagggatttgatttcgtagaagtggttttgggaaacactgagatgagt  4873200                                                                                   <---------MYB46(3)                                                                                   --------->LBD16                                                                                  <---------ANAC46                             <------MYB46(1)           <---------ANAC46          <---------LBD16                             <---------MYB46(3)    --------->At4g35610          --------->LBD16           <---------ANAC46  <------MYB83       <------NtERF2                   ------>NtERF2         <-----------HVH21  <---------AtMYB61  --------->LBD16                 <---------DEAR3(1) ---------ICU4             <---------WOX13(1)<---------LBD16         <---------ZAT14<------NtERF2 -------->YAB1<---------ARR14(2)        --------->ARR14(2)--------->ZAT14     <---------LBD16 --------ATHB12   --------->TOE2(3)     <---------ARR14(2)<---------ZAT14   <---------ARR14(2)     <- ------->ICU4 --------->ARR14(2) ----------->HVH21 <---------At4g35610   <---------GLK1(2)         --   aatcatcacacggtcgtatatgttaatggattggttcgaccggttctcgcggaggctgagtatagtatgagaacagagtctccggcggataatgcaattg  4873300                                                                 --------->ARR14(2)                                                                 <---------ARR14(2)            <---------ARR14(2)                                --------->ETT(1)            <---------ARR11(3)                             --------->ALFIN1            --------->ARR11(3)                           <---------ANAC46            --------->ARR14(2)                          <------NtERF2           --------->GLK1(1)                         --------->At4g35610          ----------->ARR10                          <---------LBD16      <---------LBD16                        --------->GLK1(1)<---------ANAC46    --------->ANAC46                <---------ARR14(2) --------->LBD16         ------->TEIL    ----------->HVH21               --------->ARR14(2)--------->ANAC46      <---------YAB1 --------->TOE2(2)            --------->ALFIN1       --------->LBD16      <------ZmHOX2a(1)  -------- --------->TOE1(2)           <------ZmHOX2a(1)       <---------At4g35610 --------->ICU4      -------- --------ARR11(3)  --------->LBD16 <------ZmHOX2a(1)<---------ANAC46    >>>>>>>GRF7         <-------- ------->ARR11(3)<---------LBD16<------ZmHOX2a(1)  <---------LBD16--------->GLK1(1)       <---------TOE2(3)   atatctacgacggagatactacggagaatgaggaggaggattcactgatttcttccgcggagtgtcggatttgtcaggatgaatgtgatattaagaatct  4873400  Previous    Next  AGI:  At1g14260.1    Description:  zinc finger (C3HC4-type RING finger) family protein. similar to zinc finger (C3HC4-type RING finger) family protein [Arabidopsis thaliana] (TAIR:AT2G02960.1); similar to zinc finger (C3HC4-type RING finger) family protein [Arabidopsis thaliana] (TAIR:AT2G02960.4); similar to zinc finger (C3HC4-type RING finger) family protein [Arabidopsis thaliana] (TAIR:AT2G02960.3); similar to hypothetical protein [Vitis vinifera] (GB:CAN70908.1); contains InterPro domain Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841); contains InterPro domain Zinc finger, variant RING-type; (Inter Range:  from: 4872851    to: 4874902    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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