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Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
 
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                                                   <------ZmHOX2a(2)                     --------->LBD16
                                                  <---------ARR11(3)                   <---------LBD16
                                         <---------MYB52(1)                           --------->MYB52(1)
                                       ----------->GT1     <---------At5g28300        <---------At5g28300
                                 --------->ANAC46 <---------ARR14(2)              <---------ARR11(3)
                  --------->TOE2(3)   <------------AtMYB77<-----------GT1         --------->ARR11(3)
   <---------MYB46(3)            --------->ANAC58 --------->ARR14(2)          ---------->DOF2      <
-----ZmHOX2a(2)  ----------->GT1 --------->ANAC58 --------->AGP1     <---------ICU4  <-----------GT1
 
gatcgattgttcaattcgaaatgttaattctactctaagcaactgttaatccagatccaatttacagtcaaaacatgactctaaagatttaccggtgaag  4839200
                                                                                        ----------->HVH21
                                                                                        ----------->TGA1
                                                                                       =============
                                             <----------DOF2                          ==============
                                     --------->O2                                     <------ZmHOX2a(2)
                                     <---------TGA1a                                  --------->CCA1(2)
                                     --------->TGA1a                                 <---------ARR11(3)
                                     <---------O2                                    --------->ARR11(3)
                                     ===================bZIP_DOF                     <-----------ARR10
                                   ------>NtERF2                                     <---------ARR14(2)
                                  --------->DEAR3(1)                                 --------->AGP1
                                ------>ZmHOX2a(1)                  --------->ANAC58  --------->ARR14(2)
                               --------->TOE1(2)          ====================================HOX2a_HOX2a
       ----------->RAV1(2)     --------->TOE2(2)          ===================================HOX2a_HOX2a
       <---------ANAC55(2)  <---------ARR11(3)            <------ZmHOX2a(1)          <---------AGP1
    --------->DOF5.7(2)     --------->ARR14(2)      <---------ANAC46         --------->MYB52(2)
    <---------MYB52(1)      --------->ARR11(3)      <---------ANAC58       <---------MYB52(1)
   <-----------HVH21        <---------ARR14(2) <-----------RAV1(1) --------->ANAC58 <---------CCA1(2)
---------ALFIN1    --------->ZAT6 ----------->HVH21 <---------ANAC58     <---------ZAT6------>ZmHOX2a(2)
 
aaacaccgttacctgagctataacaccagaaaatcctccgacgagagcctttgtggcgagaggaagagactcgctattgttagtttcagatctgacgatg  4839300
                       <---------GLK1(2)
               --------->ARR14(2) <---------ANAC58                                     <---------ATHB12
               <---------ARR14(2) <---------ANAC46                       <----------DOF2
              <---------CCA1(2)   <---------ANAC58             <------NtERF2          ------>MYB83
       <---------GLK1(2)   <---------YAB1                    --------->DEAR3(1)       ------>MYB46(1)
 ------>ZmHOX2a(1)    <--------ATHB1                        <---------LBD16 --------->REM1(2)
 <----------DOF2      --------->YAB1       <-----------RAV1(2)--------->LBD16        --------->WOX13(1)
========HOX2a_HOX2a  --------->ICU4 --------->ALFIN1--------->YAB1    --------->ARR11(3)          <-
========HOX2a_HOX2a  <---------ATHB12--------->REM1(2) <---------ICU4 <---------ARR11(3)      ------
 
agtcctttcaaattctcgtatccaatgattctgataggcgtgtagaacaggtgtctgataatcgccggagatagacctttgtagagaccaatcactcctt  4839400
                                                                       --------->At4g35610
                                                            --------->LBD16
                                                           <---------HSFB2a(2)
                                                         <------ZmHOX2a(2)
                                                 ---------->DOF2       --------->ZAT2
                                               <-----------RAV1(2)     <---------ZAT2
              <---------ARR14(2)             ----------->RAV1(1)       <---------At4g35610         -
   --------->ANAC46                        --------->ZAT18 --------->HSFB2a(2)                  ----
   --------->ANAC58               <---------ARR14(2)    --------->ARR14(2)                    <-----
   --------->ANAC58      ---------->DOF2   <---------ZAT18------>ZmHOX2a(2)                  -------
---------DOF2 --------->ARR14(2)  --------->ARR14(2)    <---------ARR14(2)           <----------DOF2
>ZmHOX2a(1) --------->ANAC46     --------->WOX13(1)    <---------ARR14(1) <-------TEIL      --------
 
cctttctcgcaatctccgatacgactccgaaagcgccaatccgatgcgcaccagaagcggatcccgaaccatggagctgcattctagtctttgtgagatc  4839500
                                                               <---------DEAR3(2)
                                                               <------MYB83
                                                               <------MYB46(1)
                                                              <---------DEAR4(1)
                                                              <---------DEAR3(1)
                                                              --------->MYB46(2)
                                                              --------->MYB55(2)
                                                              <---------DREB2C(2)
                                                              --------->MYB52(2)
                                                              <---------MYB46(3)
                                                             <---------ORA47(1)
                                                             --------->SPL7
                                                             <--------P
                                                    ------>ZmHOX2a(1)
          <------------AtMYB77                    ------>ZmHOX2a(2)                      --------->ANAC46
        --------->MYB52(1)                       <------ZmHOX2a(2)                      <---------At4g35610
     --------->ANAC58                           <---------ARR14(2)                      --------->At4g35610
     <---------ANAC55(2)                        --------->ARR14(3)                     <---------ALFIN1
     --------->ANAC58                           --------->ARR11(3)                    <------NtERF2
     --------->ANAC46                           <---------ARR11(3)  <----------DOF2  ------>NtERF2
     --------->ANAC55(1)                        --------->ARR14(2) <---------ANAC58  <---------ATERF1(1)
     --------->ANAC55(2)                        <---------ARR14(3) <---------ANAC58 --------->ARR14(2)
  --------->ARR14(2)                           <------ZmHOX2a(1)  --------->ABI4(2) <---------ARR14(2)
  <---------ARR14(2)                        --------->YAB1   <---------MYB55(1)    <---------ZAT2
-------->YAB1          ------->GAMYB  --------->ANAC58 <---------ARR14(2)          <---------At4g35610
----->WOX13(1)         --------->AtMYB61   <---------ZAT2<---------LBD16           --------->At4g35610
-ZmHOX2a(2)           <---------MYB55(2)  --------->ANAC58  <---------MYB52(1)     --------->ZAT2
-->ARR11(3)           --------->MYB46(3)  --------->ANAC58  <-----------HVH21     <---------ATERF1(1)
->At4g35610------->GAMYB              --------->ANAC58 --------->ARR14(2)  <-----------HVH21      <-
 
aatcggaaacgtaactgactctgcaaccatcgcagagagtgaagcaagcaggatcctggttccggtcggtgcttctctggtcactcggctccgctccatt  4839600
                                                                     ------->GAMYB
                                                                    --------->ANAC46
                                                                  <---------DOF5.7(2)
                                                                 <---------WRKY38(1)
    <---------ARR14(2)                                           <---------WRKY12
    --------->ARR14(2)       *TSS                                <---------WRKY45                ---
  --------->LBD16   --------->ZAT6                         <---------ANAC58          --------->At4g35610
<---------LBD16 <---------MYB52(2)                         <---------ANAC46          <---------At4g35610
----------GT1 --------->ZAT6 --------->WOX13(1)            <---------ANAC58      <-----------HVH21
 
ttcaccggatttgattaccactaacacaatgtccatcacagagaacacaacttgattctatttcgtagtcaacgacatcgtttcggtcatcagagtgtat  4839700
                                                                                         <---------ANAC46
                                                                                         <---------TGA1a
                                                                                         <---------bZIP60(2)
                                                                                         --------->TGA1a
                                                                                         --------->O2
                                                                                         <---------O2
                                                                                         ===========
                                                                                        <------NtERF2
                                                                                       ------>NtERF2
                                                                                       <---------RAP2.6(3)
                                                                                      --------->DEAR3(1)
                                                                                      =============MYC_MYB
                                                                                      ------->GAMYB
                                                                                     --------->DEAR3(2)
                                                                                    <---------At4g35610
                                                                                    --------->At4g35610
            --------->TOE2(3)                                                      ------->GAMYB
       <---------DEAR3(2)                                                          ================MYC_MYB
   <---------bZIP60(1)      ---------->DOF2                                       --------->MYB46(3)
   <---------O2   <------------CBF                                              --------->MYB52(1)
   --------->bZIP60(1)   <----------DOF2                                    <---------ZAT6
   --------->O2 <---------AHL20(2)      --------->PCF2                 <----------DOF2----------->HVH21
-------->HVH21 --------->YAB1           <---------PCF2                 ============================bZIP_DOF
 
ttgacgacgtcgtttccataatattgggctttaaagtcttatgggcccatgttcacaaattctaaaatacaaaactttagagataacagccgacgtggca  4839800
                                                                                                   -
                                                                                                   -
                                                                                                   -
                                                                                                  --
                                                                                                 ---
                                                                                                 ---
                                                                                                ----
                                                                                              <-----
                                                                                              ------
                                                                                             -------
                                                   ------>ZmHOX2a(1)                       <--------
                                                 *TSS                                      ---------
                                               <---------ARR14(2)                          ---------
                                               --------->ARR14(2)                         --------->MYB46(3)
                                              <---------CCA1(2)                         --------->REM1(1)
            --------->REM1(2)  --------->At4g35610--------->TOE1(3)                   ------>ZmHOX2a(1)
   ---------->DOF2 <---------YAB1   ------>ZmHOX2a(1)                            --------->At4g35610
==============bZIP_DOF         <---------At4g35610--------->TOE2(3)              <---------At4g35610
 
aaacatgaaagaccgagtagacattatagttttgagctcctcccatttcatatccttaagaaaaacaaaaacaaaaatcaaatgagctccttcaccacca  4839900
      ------>NtERF2
      --------->LBD16
      <---------ATERF1(1)
     --------->ANAC58
     --------->ANAC58
     --------->ANAC46
  --------->ANAC46    --------->HSFB2a(2)
--------->ZAT6--------->ARR14(2)
<---------ALFIN1     <---------LBD16
----->MYB46(1)<---------ARR14(2)
----->MYB83   <-----------ARR10                     --------->MYB46(3)
------->P------>NtERF2<---------HSFB2a(2)          -------->P
--------->RAV1(1)   ------>ZmHOX2a(1)              ------>MYB83
------>MYB46(3)--------->GLK1(1)                   ------>MYB46(1) <-----------RAV1(1)
------>AtMYB61------->TEIL                 --------->REM1(2)   <---------ANAC46               <-----
----->MYB46(3)<---------ARR11(1)         --------->LBD16     <-----------HVH21            --------->ANAC58
----ALFIN1<------NtERF2--------->LBD16  <---------ANAC46     --------->LBD16    --------->ARR14(2)
--->AtMYB61  <---------CCA1(2)       --------->DEAR3(1)<---------MYB52(1)       <---------ARR14(2)
-->MYB46(3)  <---------ARR14(1)   --------->YAB1  --------->MYB55(1)        --------->LBD16   ------
-ALFIN1 <---------ALFIN1         <---------YAB1   --------->MYB52(1)      <---------LBD16 --------->ANAC46
>AtMYB61--------->DEAR3(1)    <---------AHL20(2) --------->AtMYB61<---------TOE1(2)       --------->ANAC58
>ANAC46--------->MYB46(3)     --------->AHL20(2)--------->MYB46(3)<---------TOE2(2)   ----------->RAV1(1)
 
ccaacactccgccaccgtatctcctccggaaaatttatcatcgccgtgtaaaccaaccgttctccgtcgtatgttgcaccggagaaccccaacaagacat  4840000
                                                        <-----------HVH21
                                                       --------->bZIP60(1)
                                                       --------->ANAC58
                                                       --------->ANAC55(2)
                                                       <---------ANAC55(2)
                                                       --------->ANAC58
                                                       --------->REM1(1)
                                                       --------->ANAC46
                                                       --------->bZIP60(2)
                                                      <-----------STF1
                                                   --------->ABI4(2)
                                                  --------->ALFIN1
                                                 <------NtERF2
                                                <---------DEAR3(2)
              --------->TOE2(3)                 <---------DEAR4(2)
        <------NtERF2                           <---------MYB46(3)
       --------->LBD16                          <---------ORA47(2)
      --------->DEAR3(1)                       <---------DREB2C(2)
     <---------LBD16                           <---------DEAR3(1)
     <------NtERF2                            <---------ABI4(1)
    ------>NtERF2>>>>>>>>>WRKY18            <---------DEAR3(1)
    --------->LBD16                        <---------At4g35610
    --------->MYB52(1)    --------->YAB1   --------->At4g35610                       <----------ARF1
   --------->ANAC46  --------->ZAT14      ----------------------->TaNAC69(2)         ----------->HVH21
   ------->GAMYB <---------WRKY18(1)     <---------WRKY38(1)--------->At4g35610      <----------ID1
  --------->MYB46(3) --------->ZAT18     <---------WRKY12--------->TGA2(2)       --------->ALFIN1
  <---------MYB55(2) <---------ZAT14    --------->WRKY18(1) <---------At4g35610--------->CCA1(2)
----ARR11(3)  --------->TOE1(3)        <-----------HVH21<-----------TGA1<-----------RAV1(2)       --
--->ARR11(3)--------->GLK1(2)       <---------At5g28300<---------bZIP60(1) <------ZmHOX2a(1)<-------
 
cttcacccgccggagaaccttgacttcactaataacattcacggtcatcggcggtgctacgtcatcagcattagcacaggagaaatgggggacaaggtca  4840100
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AGI:  At1g14140.1   
Description:  mitochondrial substrate carrier family protein. similar to ATUCP2 (UNCOUPLING PROTEIN 2), oxidative phosphorylation uncoupler [Arabidopsis thaliana] (TAIR:AT5G58970.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO48352.1); contains InterPro domain Adenine nucleotide translocator 1; (InterPro:IPR002113); contains InterPro domain Mitochondrial brown fat uncoupling protein; (InterPro:IPR002030); contains InterPro domain Mitochondrial substrate carrier; (InterPro:IPR001993); contains InterPro domain Mitochondrial carrier protein; (InterPro:IPR002067)
Range:  from: 4837924    to: 4839630    Orientation: Reverse
Links:  TAIR  MIPS 
 
AGI:  At1g14150.1   
Description:  oxygen evolving enhancer 3 (PsbQ) family protein. similar to PSBQ/PSBQ-2/PSII-Q (PHOTOSYSTEM II SUBUNIT Q-2), calcium ion binding [Arabidopsis thaliana] (TAIR:AT4G05180.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO48361.1); contains InterPro domain Photosystem II oxygen evolving complex protein PsbQ; (InterPro:IPR008797)
Range:  from: 4839850    to: 4840748    Orientation: Forward
Links:  TAIR  MIPS 
 
 
Please cite the corresponding publications when using AthaMap.

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