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UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
 
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                                                                                       <-------GAMYB
                                                                                     <---------TOE2(3)
                                                                                     <---------AtMYB61
                                                                                   <---------MYB46(3)
                                                                                 <-------GAMYB
                                                                                xxxxxxxxxxxxxxxxxxxx
                                                                                <---------MYB46(3)
                                                                               <---------TOE2(3)
                                                                               <xxxxxxxxxxxxxxxxxxxx
                                                                               <---------AtMYB61
                                                                             <---------MYB46(3)
                                                                           <-------GAMYB<--------P
                                                                          <---------DEAR3(2)
                                                                          <------MYB83<---------MYB46(3)
                                                                          <------MYB46(1)<---------MYB46(3)
                                                                          <---------MYB46(3)
                                                                         <---------DREB2C(2)
                                                                  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)
                                                                  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)
                                                 <---------AHL20(1)     <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)
                    <---------ICU4               <---------AHL20(2) <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)
                   ------>ZmHOX2a(1)          ------->TEIL     xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)
                   <---------YAB1           <-------TEIL       <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)
               <-----------GT1         <-----------GT1        xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)
         ---------->ID1           --------->ATHB12           xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)
   --------->ARR14(2)            <---------YAB1  --------->AHL20(2)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)
   <---------ARR14(2)      ---------->DOF2 --------->AtLEC2<---------YAB1<---------DEAR3(1)    <----
 
tttgtggattttgttttttttcctgattacaaaagtatgatttaacatgcattttatttgttatgtttgggtttagtcggttgtggttgtggttgttctt  4773200
                                                       <-------TEIL
                                                       ------->TEIL
                                                    --------->ANAC55(2)
                                                    <---------ANAC55(2)
                                                   --------------->AtSPL8
                                                   --------------->AtSPL3
                             <-----------GT1       <-------TEIL
                    <-------TEIL            --------->TOE1(3)
                --------------->AtSPL8      --------->TOE2(3)            <---------ICU4 <---------AHL20(2)
xx>smallRNA(se3)--------->DAG2            --------->ARR11(3)       --------->TOE2(3)   --------->AHL20(2)
xxsmallRNA(se3) <---------------AtSPL8    <---------ARR11(3)       ----------->GT1  --------->YAB1
-------GT1     ---------->DOF2            --------->GLK1(2)       ----------->GT1  <-------TEIL-----
 
acaatttagttttttgaataaagtacatatttttaccaaaaacaaaatcttaaatacgtacattttgaaatgttaaaaatgacatattcataaaatttta  4773300
                   <------ZmHOX2a(2)
                  <---------AGP1
                  <---------ARR11(3)
                  --------->ARR14(3)
      <---------YAB1
      --------->ICU4------>ZmHOX2a(2)
    --------->YAB1<---------ARR14(3)         --------->TOE2(3)
   --------->ICU4 --------->ARR11(3)       ------>MYB46(1)                               <----------
 --------->YAB1   --------->ARR14(2)       ------>MYB83                 --------->AHL20(2)
 <---------ICU4   <---------ARR14(2)      ----------->RAV1(1)           <---------AHL20(2)
--------->ICU4   --------->RVE1(1)      --------->MYB46(3)      ----------->GT1      ---------->DOF2
------>GT1    ---------->DOF2   <----------ID1            --------->TOE2(3) --------->YAB1  --------
 
gtaaaaatgatgattttaaaagatctcgatgaaaaatgacaaaaccaacattaatcgcttacattattcgtaaaatttatcatgttttcaaagacatgaa  4773400
                                                         --------->SPL7
                                                        --------->MYB52(1)
                                                      ------>ZmHOX2a(2)
                                                 ------->MYC3
                                                --------->ANAC55(2)
                                                <---------TGA1a
                                                <---------ANAC55(2)
                                                --------->O2
                                                ==================================================bZIP_DOF
                                                <---------O2
                                                --------->TGA1a
                                             <------ZmHOX2a(2)
                 ----------->GT1            --------->ARR11(3)
                 --------->LBD16           --------->At4g35610                     <---------TOE2(3)
               <---------LBD16             <---------At4g35610                 --------->YAB1
     ------>ZmHOX2a(2)                <---------CCA1(2)<---------SPL7--------->ANAC58
   --------->ARR11(3)               --------->YAB1----------->HVH21  --------->ANAC58
   <---------ARR11(3)           ------>ZmHOX2a(2)<-------MYC3--------->ALFIN1------------>CBF      -
-------------TaNAC69(2)       <---------ARR11(3)--------->ANAC46  <---------ARR14(2)      ----------
->AtLEC2    ----------->HVH21 --------->ARR11(3)<---------ANAC46  --------->ARR14(2)   <----------DOF2
 
aacattgatctctatatgaccggagaaaacattgatctctcatatcagatcacgtgatcgaacggtggagaaacgctctctacaataaggctttaaagcc  4773500
                                                             <---------At4g35610
                                                             --------->At4g35610
                                                           <---------WRKY38(1)                 <----
                                                     =====================HOX2a_HOX2a          <----
                                                     ------>ZmHOX2a(2)                         -----
                                                    ======================HOX2a_HOX2a     --------->LBD16
                                                    <------ZmHOX2a(2)                    -----------
            <---------AHL20(1)                     --------->ARR14(2)                  ------->TEIL
            --------->ARR11(3)                  --------->HSFB2a(2)                <---------------AtSPL3
            <---------ARR11(3)              <----------DOF2<---------WRKY45        --------------->AtSPL8
            --------->AHL20(1)      <----------DOF2<---------ARR14(2)            --------->ARR11(3)
           --------->AHL20(2)      <---------DAG2--------->LBD16                 <---------ARR11(3)
     --------->TOE1(3)          --------->ANAC58----------------->AGL1  *TSS     --------->GLK1(2)
--------->DOF2   ---------->DOF2--------->ANAC58<---------HSFB2a(2)------>ZmHOX2a(1)   --------->SPL7
>DOF2--------->TOE2(3)   ---------->DOF2---------->ID1     <---------WRKY12     --------->RVE1(1)  -
 
cataaaacccttaaatatatcaaagcccaaaagaaacgccttttgcgctttcccgatcgtggtcaacttcctctgttaccaaaaaatctgtaccgcaaaa  4773600
                                                               <------NtERF2
                                                              --------->LBD16
                                                             --------->DEAR3(1)
                                                            <---------LBD16
                                                            <------NtERF2
                                                            --------->ATERF1(1)
                                                           <---------RAP2.3(1)
                                                          <---------O2           --------->ANAC46
                                                          <---------bZIP60(1) ------>MYB46(1)
              --------->ZAT2                              <---------bZIP60(2) ------>MYB83         -
         --------->ZAT18                                  --------->bZIP60(1) -------->P           -
       --------->ZAT2                                    <-----------------------TaNAC69(2)     ----
 <-----------HVH21                                     ----------->HVH21    --------->AtMYB61   <---
-----ARR11(3) --------->At4g35610                  --------->ZAT14          <---------MYB59     ----
-----ARR14(2) <---------ZAT2       <------ZmHOX2a(1)   ----------->TGA1     <---------MYB111(1) <---
---->ARR14(2) <---------At4g35610--------->ALFIN1  --------->ZAT18<---------ANAC58       <---------ZAT2
>GT1   <---------ZAT2       ----------->HVH21      <---------ZAT14<---------ANAC58       --------->ZAT2
----->ZmHOX2a(1)         <-----------HVH21  <----------DOF2------>NtERF2    <---------MYB46(2)  ----
 
tcctcgtcgaagctcgctgctgcaaccatgtccgacgaggagcatcactttgagtccagtgacgccggagcgtccaaaacctaccctcaacaagctggaa  4773700
                                                                                            ------>ZmHOX2a(2)
                                                                                            ========
                                                                                           <------ZmHOX2a(2)
                                                                                           =========
                                                                                          <---------ARR14(2)
          ----------->GT1                                                                 <---------AGP1
          <---------MYB46(3)                                                              --------->AGP1
      --------->ICU4                                                                      --------->ARR14(2)
  --------->LBD16                                                                         <---------ARR11(3)
 --------->ANAC55(2)                                                                      --------->ARR11(3)
 <---------ANAC55(2)                                                              ------>ZmHOX2a(2)
 --------->ANAC46                                                               --------->ARR11(3)
----->MYB83                                                                 ======================HOX2a_HOX2a
----->MYB46(1)                                                              <---------At4g35610
----->HSFB2a(1)                                                             ------>ZmHOX2a(1)    <--
------HSFB2a(1)                                               <-----------GT1   <---------ARR11(3)
----->MYB46(3)                                 <---------ANAC58             =======================HOX2a_HOX2a
------HSFC1(2)                                 <---------ANAC58  <---------ALFIN1 ==================
----->HSFC1(2)     <-----------TGA1  --------->AtLEC2    <---------ICU4     =============HOX2a_HOX2a
 
ccatccgtaagaatggttacatcgtcatcaaaaatcgtccctgcaaggtttcgttctcaaacatttctccactctcttcctctgatcttattagatctgt  4773800
                    <----------DOF2
                 --------->GLK1(2)
                <---------GLK1(2)                                          <---------AHL20(2)
                <---------ARR14(2)                                     ----------->GT1         <----
                --------->ARR14(2)                                  --------->ATHB12       <--------
            ------>ZmHOX2a(1)                                       <---------ICU4         ---------
       <---------GLK1(2)              --------->ANAC46             <---------YAB1     <---------AHL20(1)
===================HOX2a_HOX2a   --------->AtMYB61                 --------->ICU4     --------->AHL20(2)
===================HOX2a_HOX2a  <---------At4g35610              --------->YAB1       --------->AHL20(1)
-------ICU4--------->TOE2(3)<-----------HVH21               <---------ANAC58          <---------AHL20(2)
===================HOX2a_HOX2a  --------->At4g35610         <---------ANAC58    <-----------GT1<----
 
tcattacttagattcctcagattcttttttttgtcacctccacgatgttcgactgatatttgttcttgtcatcattgttaaattcacattttattgcact  4773900
                       <<<<<<<<<<WRKY38
                       <<<<<<<<<<WRKY26
                       <<<<<<<<<<WRKY43
                --------->AHL20(1)                                                     <---------ZAT2
                <---------AHL20(1)                                                     --------->At4g35610
                --------->AHL20(2)                                                     <---------At4g35610
                <---------AHL20(2)                                                     --------->ZAT2
               --------->AHL20(2)                                                    <-----------RAV1(2)
               <---------AHL20(2)                                                   <------ZmHOX2a(2)
              <---------YAB1                                                       --------->ARR14(2)
            <---------ICU4                                                --------->ANAC58
            -------->ATHB1                                   ----------------------->TaNAC69(2)
-----DAG2  <---------AHL20(2)                               <---------RVE1(1)      <---------ARR14(2)
-ZAT18     --------->AHL20(2)                             =================================HOX2a_HOX2a
>ZAT18     --------->ICU4 --------->At4g35610             <------ZmHOX2a(1)  <-----------GT1
------DOF2 <---------ATHB51      <---------MYB52(1)     <---------TOE2(3) --------->ANAC58--------->At4g35610
 
tttgttttagcgaaattattaaattggtcatcttcagttttgttcgattagataagttttaggattttttcttacacaagttactggatcagctgctaaa  4774000
                     <---------TOE1(3)
                     <---------TOE2(3)
                 <-------GAMYB
                --------->MYB111(2)                                                               <-
                <---------MYB46(3)                                                              ----
               <--------P                                                                       ----
            <---------TOE2(2)                                                               --------
            <---------TOE1(2)                          <---------YAB1                       --------
           <-----------RAV1(2)                         --------->AtLEC2            --------->ARR11(3)
         <---------ANAC46                      --------->YAB1                      <---------ARR11(3)
       <-----------HVH21                     --------->ANAC58                     <---------CCA1(2)
      <-----------RAV1(1)                    --------->ANAC58                     <---------GLK1(1)
      =================RAV     --------->TOE2(3)    --------->WRKY18(1) ---------->ID1      --------
 
tgtcattttgtgtcgcaggttgttgaggtttcaacctcgaagactggcaagcatggtcatgctaaatgtcattttgtagctattgatatcttcaccagca  4774100
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AGI:  At1g13950.1   
Description:  EIF-5A (eukaryotic translation initiation factor 5A-1); translation initiation factor. Identical to Eukaryotic translation initiation factor 5A-1 [Arabidopsis Thaliana] (GB:Q9XI91;GB:Q9LMG2); similar to eukaryotic translation initiation factor 5A, putative / eIF-5A, putative [Arabidopsis thaliana] (TAIR:AT1G69410.1); similar to Eukaryotic translation initiation factor 5A-2 (eIF-5A-2) (GB:Q945F4); contains InterPro domain Translation protein SH3-like (InterPro:IPR008991); contains InterPro domain KOW (InterPro:IPR005824); contains InterPro domain Translation protein SH3-like, subgroup (InterPro:IPR014722); contains InterPro domain Eukaryotic
Range:  from: 4773573    to: 4774864    Orientation: Forward
Links:  TAIR  MIPS 
 
 
Please cite the corresponding publications when using AthaMap.

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