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Chromosome 1
Chromosome 2
Chromosome 3
Chromosome 4
Chromosome 5
Position
Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
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1 10 20 30 40 50 60 70 80 90 100
<-------
GAMYB
<---------
TOE2(3)
<---------
AtMYB61
<---------
MYB46(3)
<-------
GAMYB
xxxxxxxxxxxxxxxxxxxx
<---------
MYB46(3)
<---------
TOE2(3)
<xxxxxxxxxxxxxxxxxxxx
<---------
AtMYB61
<---------
MYB46(3)
<-------
GAMYB
<--------
P
<---------
DEAR3(2)
<------
MYB83
<---------
MYB46(3)
<------
MYB46(1)
<---------
MYB46(3)
<---------
MYB46(3)
<---------
DREB2C(2)
<xxxxxxxxxxxxxxxxxxxxxxx
smallRNA(se3)
xxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(i2)
<---------
AHL20(1)
<xxxxxxxxxxxxxxxxxxxxxxx
smallRNA(si3)
<---------
ICU4
<---------
AHL20(2)
<xxxxxxxxxxxxxxxxxxxxxxx
smallRNA(fl3)
------>
ZmHOX2a(1)
------->
TEIL
xxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(le3)
<---------
YAB1
<-------
TEIL
<xxxxxxxxxxxxxxxxxxxxxxx
smallRNA(si3)
<-----------
GT1
<-----------
GT1
xxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(le3)
---------->
ID1
--------->
ATHB12
xxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(se3)
--------->
ARR14(2)
<---------
YAB1
--------->
AHL20(2)
xxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(se3)
<---------
ARR14(2)
---------->
DOF2
--------->
AtLEC2
<---------
YAB1
<---------
DEAR3(1)
<----
tttgtggattttgttttttttcctgattacaaaagtatgatttaacatgcattttatttgttatgtttgggtttagtcggttgtggttgtggttgttctt
4773200
<-------
TEIL
------->
TEIL
--------->
ANAC55(2)
<---------
ANAC55(2)
--------------->
AtSPL8
--------------->
AtSPL3
<-----------
GT1
<-------
TEIL
<-------
TEIL
--------->
TOE1(3)
--------------->
AtSPL8
--------->
TOE2(3)
<---------
ICU4
<---------
AHL20(2)
xx>
smallRNA(se3)
--------->
DAG2
--------->
ARR11(3)
--------->
TOE2(3)
--------->
AHL20(2)
xx
smallRNA(se3)
<---------------
AtSPL8
<---------
ARR11(3)
----------->
GT1
--------->
YAB1
-------
GT1
---------->
DOF2
--------->
GLK1(2)
----------->
GT1
<-------
TEIL
-----
acaatttagttttttgaataaagtacatatttttaccaaaaacaaaatcttaaatacgtacattttgaaatgttaaaaatgacatattcataaaatttta
4773300
<------
ZmHOX2a(2)
<---------
AGP1
<---------
ARR11(3)
--------->
ARR14(3)
<---------
YAB1
--------->
ICU4
------>
ZmHOX2a(2)
--------->
YAB1
<---------
ARR14(3)
--------->
TOE2(3)
--------->
ICU4
--------->
ARR11(3)
------>
MYB46(1)
<----------
--------->
YAB1
--------->
ARR14(2)
------>
MYB83
--------->
AHL20(2)
<---------
ICU4
<---------
ARR14(2)
----------->
RAV1(1)
<---------
AHL20(2)
--------->
ICU4
--------->
RVE1(1)
--------->
MYB46(3)
----------->
GT1
---------->
DOF2
------>
GT1
---------->
DOF2
<----------
ID1
--------->
TOE2(3)
--------->
YAB1
--------
gtaaaaatgatgattttaaaagatctcgatgaaaaatgacaaaaccaacattaatcgcttacattattcgtaaaatttatcatgttttcaaagacatgaa
4773400
--------->
SPL7
--------->
MYB52(1)
------>
ZmHOX2a(2)
------->
MYC3
--------->
ANAC55(2)
<---------
TGA1a
<---------
ANAC55(2)
--------->
O2
==================================================
bZIP_DOF
<---------
O2
--------->
TGA1a
<------
ZmHOX2a(2)
----------->
GT1
--------->
ARR11(3)
--------->
LBD16
--------->
At4g35610
<---------
TOE2(3)
<---------
LBD16
<---------
At4g35610
--------->
YAB1
------>
ZmHOX2a(2)
<---------
CCA1(2)
<---------
SPL7
--------->
ANAC58
--------->
ARR11(3)
--------->
YAB1
----------->
HVH21
--------->
ANAC58
<---------
ARR11(3)
------>
ZmHOX2a(2)
<-------
MYC3
--------->
ALFIN1
------------>
CBF
-
-------------
TaNAC69(2)
<---------
ARR11(3)
--------->
ANAC46
<---------
ARR14(2)
----------
->
AtLEC2
----------->
HVH21
--------->
ARR11(3)
<---------
ANAC46
--------->
ARR14(2)
<----------
DOF2
aacattgatctctatatgaccggagaaaacattgatctctcatatcagatcacgtgatcgaacggtggagaaacgctctctacaataaggctttaaagcc
4773500
<---------
At4g35610
--------->
At4g35610
<---------
WRKY38(1)
<----
=====================
HOX2a_HOX2a
<----
------>
ZmHOX2a(2)
-----
======================
HOX2a_HOX2a
--------->
LBD16
<------
ZmHOX2a(2)
-----------
<---------
AHL20(1)
--------->
ARR14(2)
------->
TEIL
--------->
ARR11(3)
--------->
HSFB2a(2)
<---------------
AtSPL3
<---------
ARR11(3)
<----------
DOF2
<---------
WRKY45
--------------->
AtSPL8
--------->
AHL20(1)
<----------
DOF2
<---------
ARR14(2)
--------->
ARR11(3)
--------->
AHL20(2)
<---------
DAG2
--------->
LBD16
<---------
ARR11(3)
--------->
TOE1(3)
--------->
ANAC58
----------------->
AGL1
*
TSS
--------->
GLK1(2)
--------->
DOF2
---------->
DOF2
--------->
ANAC58
<---------
HSFB2a(2)
------>
ZmHOX2a(1)
--------->
SPL7
>
DOF2
--------->
TOE2(3)
---------->
DOF2
---------->
ID1
<---------
WRKY12
--------->
RVE1(1)
-
cataaaacccttaaatatatcaaagcccaaaagaaacgccttttgcgctttcccgatcgtggtcaacttcct
ctgttaccaaaaaatctgtaccgcaaaa
4773600
<------
NtERF2
--------->
LBD16
--------->
DEAR3(1)
<---------
LBD16
<------
NtERF2
--------->
ATERF1(1)
<---------
RAP2.3(1)
<---------
O2
--------->
ANAC46
<---------
bZIP60(1)
------>
MYB46(1)
--------->
ZAT2
<---------
bZIP60(2)
------>
MYB83
-
--------->
ZAT18
--------->
bZIP60(1)
-------->
P
-
--------->
ZAT2
<-----------------------
TaNAC69(2)
----
<-----------
HVH21
----------->
HVH21
--------->
AtMYB61
<---
-----
ARR11(3)
--------->
At4g35610
--------->
ZAT14
<---------
MYB59
----
-----
ARR14(2)
<---------
ZAT2
<------
ZmHOX2a(1)
----------->
TGA1
<---------
MYB111(1)
<---
---->
ARR14(2)
<---------
At4g35610
--------->
ALFIN1
--------->
ZAT18
<---------
ANAC58
<---------
ZAT2
>
GT1
<---------
ZAT2
----------->
HVH21
<---------
ZAT14
<---------
ANAC58
--------->
ZAT2
----->
ZmHOX2a(1)
<-----------
HVH21
<----------
DOF2
------>
NtERF2
<---------
MYB46(2)
----
tcctcgtcgaagctcgctgctgcaacc
atgtccgacgaggagcatcactttgagtccagtgacgccggagcgtccaaaacctaccctcaacaagctggaa
4773700
------>
ZmHOX2a(2)
========
<------
ZmHOX2a(2)
=========
<---------
ARR14(2)
----------->
GT1
<---------
AGP1
<---------
MYB46(3)
--------->
AGP1
--------->
ICU4
--------->
ARR14(2)
--------->
LBD16
<---------
ARR11(3)
--------->
ANAC55(2)
--------->
ARR11(3)
<---------
ANAC55(2)
------>
ZmHOX2a(2)
--------->
ANAC46
--------->
ARR11(3)
----->
MYB83
======================
HOX2a_HOX2a
----->
MYB46(1)
<---------
At4g35610
----->
HSFB2a(1)
------>
ZmHOX2a(1)
<--
------
HSFB2a(1)
<-----------
GT1
<---------
ARR11(3)
----->
MYB46(3)
<---------
ANAC58
=======================
HOX2a_HOX2a
------
HSFC1(2)
<---------
ANAC58
<---------
ALFIN1
==================
----->
HSFC1(2)
<-----------
TGA1
--------->
AtLEC2
<---------
ICU4
=============
HOX2a_HOX2a
ccatccgtaagaatggttacatcgtcatcaaaaatcgtccctgcaag
gtttcgttctcaaacatttctccactctcttcctctgatcttattagatctgt
4773800
<----------
DOF2
--------->
GLK1(2)
<---------
GLK1(2)
<---------
AHL20(2)
<---------
ARR14(2)
----------->
GT1
<----
--------->
ARR14(2)
--------->
ATHB12
<--------
------>
ZmHOX2a(1)
<---------
ICU4
---------
<---------
GLK1(2)
--------->
ANAC46
<---------
YAB1
<---------
AHL20(1)
===================
HOX2a_HOX2a
--------->
AtMYB61
--------->
ICU4
--------->
AHL20(2)
===================
HOX2a_HOX2a
<---------
At4g35610
--------->
YAB1
--------->
AHL20(1)
-------
ICU4
--------->
TOE2(3)
<-----------
HVH21
<---------
ANAC58
<---------
AHL20(2)
===================
HOX2a_HOX2a
--------->
At4g35610
<---------
ANAC58
<-----------
GT1
<----
tcattacttagattcctcagattcttttttttgtcacctccacgatgttcgactgatatttgttcttgtcatcattgttaaattcacattttattgcact
4773900
<<<<<<<<<<
WRKY38
<<<<<<<<<<
WRKY26
<<<<<<<<<<
WRKY43
--------->
AHL20(1)
<---------
ZAT2
<---------
AHL20(1)
--------->
At4g35610
--------->
AHL20(2)
<---------
At4g35610
<---------
AHL20(2)
--------->
ZAT2
--------->
AHL20(2)
<-----------
RAV1(2)
<---------
AHL20(2)
<------
ZmHOX2a(2)
<---------
YAB1
--------->
ARR14(2)
<---------
ICU4
--------->
ANAC58
-------->
ATHB1
----------------------->
TaNAC69(2)
-----
DAG2
<---------
AHL20(2)
<---------
RVE1(1)
<---------
ARR14(2)
-
ZAT18
--------->
AHL20(2)
=================================
HOX2a_HOX2a
>
ZAT18
--------->
ICU4
--------->
At4g35610
<------
ZmHOX2a(1)
<-----------
GT1
------
DOF2
<---------
ATHB51
<---------
MYB52(1)
<---------
TOE2(3)
--------->
ANAC58
--------->
At4g35610
tttgttttagcgaaattattaaattggtcatcttcagttttgttcgattagataagttttaggattttttcttacacaagttactggatcagctgctaaa
4774000
<---------
TOE1(3)
<---------
TOE2(3)
<-------
GAMYB
--------->
MYB111(2)
<-
<---------
MYB46(3)
----
<--------
P
----
<---------
TOE2(2)
--------
<---------
TOE1(2)
<---------
YAB1
--------
<-----------
RAV1(2)
--------->
AtLEC2
--------->
ARR11(3)
<---------
ANAC46
--------->
YAB1
<---------
ARR11(3)
<-----------
HVH21
--------->
ANAC58
<---------
CCA1(2)
<-----------
RAV1(1)
--------->
ANAC58
<---------
GLK1(1)
=================
RAV
--------->
TOE2(3)
--------->
WRKY18(1)
---------->
ID1
--------
tgtcattttgtgtcgcag
gttgttgaggtttcaacctcgaagactggcaagcatggtcatgctaaatgtcattttgtagctattgatatcttcaccagca
4774100
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AGI:
At1g13950.1
Description:
EIF-5A (eukaryotic translation initiation factor 5A-1); translation initiation factor. Identical to Eukaryotic translation initiation factor 5A-1 [Arabidopsis Thaliana] (GB:Q9XI91;GB:Q9LMG2); similar to eukaryotic translation initiation factor 5A, putative / eIF-5A, putative [Arabidopsis thaliana] (TAIR:AT1G69410.1); similar to Eukaryotic translation initiation factor 5A-2 (eIF-5A-2) (GB:Q945F4); contains InterPro domain Translation protein SH3-like (InterPro:IPR008991); contains InterPro domain KOW (InterPro:IPR005824); contains InterPro domain Translation protein SH3-like, subgroup (InterPro:IPR014722); contains InterPro domain Eukaryotic
Range:
from: 4773573
to: 4774864
Orientation: Forward
Links:
TAIR
MIPS
Please cite the corresponding
publications
when using AthaMap.
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