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Chromosome 1
Chromosome 2
Chromosome 3
Chromosome 4
Chromosome 5
Position
Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
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1 10 20 30 40 50 60 70 80 90 100
------->
GAMYB
----------->
RAV1(1)
--------->
ANAC58
<---------
ALFIN1
--------->
ARR11(3)
<<<<<<<<<<<<<<<<<
LFY
<---------
AHL20(2)
--------->
ANAC58
------
HSFB2a(2)
--------->
AHL20(2)
--------->
MYB46(3)
--
----->
HSFB2a(2)
<---------
ALFIN1
--------->
ZAT6
<----------
DOF2
--------->
TOE2(3)
->
ZmHOX2a(2)
<-----------
HVH21
--------->
MYB52(1)
<---------
ARR11(3)
<----------
DOF2
-
YAB1
--------->
ANAC46
--------->
YAB1
--------->
YAB1
<---------
LBD16
--------->
YAB1
<--
gagaagagaacaccacattggtcacactgtatgacaataactgatcactaataaatgtctttttcggcaacgacagaatgatatcaactttagttagcct
4760600
<<<<<<<<
-----------
--------->
ICU4
<---------
At4g35610
<---------
YAB1
--------->
AHL20(2)
--------->
DAG2
<----------
DOF2
--------->
TOE2(3)
--------->
ANAC46
--------->
At4g35610
------->
YAB1
--------->
YAB1
---------->
DOF2
<----------
ID1
<-----------
GT1
--------->
ALFIN1
-------
ATHB12
<-----------
GT1
----------->
RAV1(1)
<---------
YAB1
---------->
DOF2
--
atcatcaacgtccaaatataaacttttctaacatagagcaacattattaagacaaataatatgagtattaaactccataaactaaagtggtgctgtcaaa
4760700
--------->
YAB1
<-------
TEIL
<---------
YAB1
--------->
AHL20(2)
--------->
YAB1
<---------
AHL20(2)
<-----------
GT1
<-
<---------
YAB1
<---------
RVE1(1)
<-
<---------
AHL20(2)
<---------
GLK1(2)
--
<----------
ID1
<---------
AHL20(2)
--------->
ARR11(3)
-----
----------->
GT1
<---------
AHL20(2)
<---------
ARR11(3)
<---------
AHL20(2)
--
<
WRKY18
---------->
DOF2
--------->
AHL20(2)
<---------
RVE1(1)
--------->
AHL20(2)
<---
>
GT1
--------->
TOE2(3)
<---------
AHL20(2)
<---------
ZAT6
<-----------
GT1
--------
-------->
DOF2
--------->
ATHB12
--------->
AHL20(2)
---------->
DOF2
<----------
DOF2
<--------
aaaaagaaaaacttaaaagtgattagagttttatttatttattaatattcatagtgataaagagatttttatctctttcaatttatgaaatgttttcata
4760800
--------
AHL20(2)
<---------
AHL20(2)
--------
AHL20(1)
--------->
AHL20(2)
------->
ARR11(3)
<---------
AHL20(2)
<---------
YAB1
---->
YAB1
--------->
AHL20(2)
--------->
AHL20(2)
------->
AHL20(1)
<---------
AHL20(1)
--------->
YAB1
------
AHL20(1)
<---------
AHL20(2)
<---------
AHL20(2)
<-----------
GT1
--------->
YAB1
->
YAB1
<---------
YAB1
--------->
AHL20(2)
----------------------->
TaNAC69(2)
-
YAB1
<---------
ANAC46
--------->
YAB1
<---------
AHL20(2)
<---------
ANAC46
------
atattttgttgtcaaatatggagtattattttattttcaataacaaaaaattataaataaatgagtcgttttcacatttacgtctacaatcacaatgtat
4760900
<---------
ANAC58
<---------
ANAC58
-------->
HAHB4
--------->
YAB1
<---------
YAB1
<--------
ATHB1
<---------
TOE2(3)
<--------
HAHB4
--------->
YAB1
<---------
ICU4
<---------
YAB1
--------->
YAB1
--------->
TOE2(3)
<----------
DOF2
--------->
ARR14(2)
--------->
ATHB51
--------->
YAB1
<---------
DAG2
<---------
ARR14(2)
<---------
ATHB12
<---------
ICU4
<----------
DOF2
<-----------
RAV1(1)
--------->
ICU4
--------->
ATHB12
<---------
ZAT14
<---------
ANAC58
--------->
AHL20(2)
--------->
ICU4
----------->
GT1
---------->
ID1
----------->
RAV1(1)
<---------
ATHB51
<---------
ATHB12
--------->
ZAT14
<---------
ANAC58
->
TEIL
--------->
YAB1
<---------
ANAC46
---------->
DOF2
<---------
ZAT18
<----------
DOF2
--------->
GLK1(1)
gttatttagaacaataattatagtggcttaaaaatcattaatgaaagtagataatagtatactttttctttttctttgtgtggccaacatatccattttc
4761000
----------->
GT1
<----------
ID1
<---------
AHL20(2)
--------->
ZAT6
--------->
AHL20(1)
<-----------
GT1
<---------
AHL20(1)
<---------
ARR14(2)
--------->
AHL20(2)
--------->
ARR14(2)
<---------
AHL20(2)
------->
TEIL
<---------
CCA1(2)
--------->
AHL20(2)
----------->
GT1
<
--------->
GLK1(1)
--------->
AtLEC2
<---------
AHL20(2)
--------->
DAG2
<----
----------->
TBP
<---------
CCA1(2)
*
TSS
<----------
ID1
--------->
YAB1
---------->
DOF2
<------
tagtctatatatacacatatccatctcttaactcttcc
atccaaaaaaaacaaaacaaaaaattatattcaagagaaaaaggaaaaa
atgaatttcatct
4761100
---
----
-------
------>
MYB83
--------->
AtMYB61
--------->
MYB46(3)
<---------
MYB111(2)
<---------
MYB111(1)
<---------
GLK1(2)
--------->
ZAT2
<
---------->
DOF2
--------->
At4g35610
----------->
GT1
--------->
ANAC58
<---------
ZAT2
-
<---------
ANAC55(2)
--------->
ANAC58
<---------
At4g35610
<-----------
RAV1(2)
--------->
ANAC46
--------->
At4g35610
------>
MYB46(1)
<------
ZmHOX2a(2)
<------
ZmHOX2a(1)
<---------
ARR14(2)
--------->
ANAC58
-----------
HVH21
xxxxxxxxxxxxxxxxxx>
smallRNA(si3)
--------->
ARR14(2)
--------->
ANAC58
-------------
AGL1
----------->
RAV1(1)
xxxxxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(le3)
-------->
P
<
---
At4g35610
--------->
ANAC46
--------->
AtMYB61
<---------
TOE1(2)
--------->
REM1(1)
------
ccgatcaggtaaagaaactctcaagctcaacaccagaggagccagaccacaacaagccagtcgaaggaaccgaaacagctacaagaccagctaccaacgc
4761200
--------->
ANAC58
--------->
ANAC58
<---------
At4g35610
<---
--------->
ZAT2
<---------
ARR14(2)
<---------
ZAT2
--------->
ARR14(2)
--------->
LBD16
<------
NtERF2
--------->
RAP2.6(2)
--------->
ATERF1(1)
--------->
DEAR3(1)
<---------
ATERF1(1)
--------->
ANAC58
--------->
DEAR3(1)
--------->
ANAC46
<---------
LBD16
--->
NtERF2
<-------
PIF5
<---------
At4g35610
<------
NtERF2
----->
DEAR3(1)
--------->
At4g35610
--------->
MYB52(1)
--------->
ATERF1(1)
-->
DEAR3(1)
<---------
ZAT2
--------->
At4g35610
<---------
DEAR3(1)
---------
ZAT2
<---------
At4g35610
<---------
ALFIN1
--------->
DAG2
----
-------->
ZAT2
<---------
TOE2(3)
--------->
At4g35610
---------->
DOF2
<---
---------
At4g35610
<---------
REM1(1)
--------->
ANAC58
----------->
GT1
------>
NtERF2
->
GAMYB
------->
PIF5
--------->
At4g35610
<------
NtERF2
<---------
REM1(2)
--------->
LBD16
cgagctcatggcaagtgccaaggttgtagctgaagctgctcaagccgcagctcgtaacgaatcagacaaactcgacaagggtaaagtcgccggagcctct
4761300
------>
NtERF2
--------->
DEAR3(1)
--------->
ATERF1(1)
--------->
At4g35610
--------->
TOE2(3)
<---------
ARR11(3)
--------->
ARR11(3)
<---------
CCA1(2)
<--------
P
--------->
GLK1(1)
--------->
At5g28300
<---------
GLK1(1)
<---------------------
WRI1
--------->
ARR11(3)
------
ZAT2
--------->
ANAC46
----------->
GT1
<---------
REM1(2)
--------->
MYB46(3)
----->
At4g35610
------>
NtERF2
<-----------
HVH21
<---------
ARR11(3)
------
At4g35610
--------->
LBD16
---------->
DOF2
--------------->
AtSPL3
<-----------
ARR10
gctgatatcttagacgctgccgagaaatacggtaagttcgatgaaaagagtagcactggtcagtacctcgacaaggctgagaagtatctcaacgactacg
4761400
---------->
DOF2
<------
NtERF2
<---------
At4g35610
--------->
At4g35610
------>
NtERF2
<---------
ATERF1(1)
<---------
ERF1
<---------
MYB46(3)
<---------
ATERF1(2)
--------->
ATERF1(2)
--------->
ATERF1(1)
<------
NtERF2
--------->
RAP2.3(1)
<---------
RAP2.3(1)
<---------
ORA47(2)
<---------
DEAR4(2)
------>
NtERF2
<---------
ATERF1(1)
--------->
LBD16
<-----------
RAV1(2)
<---------
RAP2.6(2)
<---------
ANAC58
<---------
TGA1a
<---------
RAP2.3(3)
<---------
ZAT2
--------->
TGA1a
<---------
RAP2.3(2)
--------->
ABI4(2)
====================
MYC_MYB
--------->
ATERF1(2)
--------->
ALFIN1
------>
NtERF2
<---------
DEAR3(1)
<---------
ALFIN1
--------->
DEAR3(1)
--------->
DEAR3(1)
<---------
ZAT14
------>
ZmHOX2a(1)
<---------
ATERF1(2)
--------->
ZAT14
<---------
ALFIN1
--------->
ANAC58
<---------
DEAR3(1)
--------->
ANAC46
------>
ZmHOX2a(1)
<----------
CDC5
----------->
RAV1(2)
--------->
ANAC58
--------->
PCF5
--------->
O2
<------
NtERF2
<---------
LBD16
--------->
ANAC58
<---------
MYB46(3)
<-----------
HVH21
--------->
ANAC58
<---------
ANAC46
--------->
ZAT6
<---------
AtMYB61
----------->
HVH21
<---------
ZAT2
--------->
ZAT2
<---------
ALFIN1
<---------
AtMYB61
<---------
O2
--------->
ANAC58
--------->
DEAR3(2)
<
<-----------
HVH21
<---------
ANAC58
------>
ZmHOX2a(1)
--------->
ANAC58
--------->
ATERF1(1)
----
agtcgtcacactccaccggtgctggtggtcctcctcctccgacgagtcaggctgagccagcaagtcagcctgagccggcggctaagaaagacgatgaaga
4761500
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AGI:
At1g13930.1
Description:
similar to nodulin-related [Arabidopsis thaliana] (TAIR:AT2G03440.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN63832.1)
Range:
from: 4761039
to: 4761722
Orientation: Forward
Links:
TAIR
MIPS
Please cite the corresponding
publications
when using AthaMap.
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