Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                          --------->ARR11(3)                                        <---------ARR11(3)                                  <---------YAB1                               --------------->AGL15                               <---------------AGL15                               <---------DAG2                               <----------DOF2                         --------->ANAC55(2)                   <---------TOE2(3)                  <-------TEIL<-----------------AGL3           --------->MYB59                    ---   --------->ANAC46      <---------ANAC55(2)             <---------AHL20(2)                 <--------   <---------ALFIN1    <---------AHL20(2)            ----------->GT1                        --------- -CCA1(2)   --------->YAB1<---------MYB59--------->CCA1(2) <---------YAB1  --------->ANAC55(2)-------   attacacacctctataagcatacatttacttaactttttatagatatgtatagggctgtttattttaggtatgttttaagtaatgcaatttcagagttcc  4600900                                --------->ANAC46                              <---------ANAC46                              <---------ANAC55(2)                             <-------TEIL                            --------->ARR14(1)                            --------->CCA1(2)                           --------->ARR14(2)                                                     --- ------>STY1(1)            <---------ARR14(2)                                                    <--- -GLK1(1)                  --------->ARR11(1)                                                  ------ >GLK1(1)                ----------->ARR10       ---------->DOF2                              ------- -->ZAT18          <---------ANAC46----------->ARR10                          --------->ANAC46<------   ctaggctggatagtttgggtttagtataagatacgcgtagtttcggtatacaaaagtattggctaatctctgaaaaaaacacaaaactaaaaattggata  4601000                                                                                           <---------                                                                                      --------->AHL20(2)                                                                                      --------->AHL20(1)                                                                                      <---------AHL20(2)                                                                <XXXXXXXXXXXXXXXXXXXXMIR863-5P                                                       --------->WOX13(1)            <---------AHL20(2)                                                     <---------YAB1                  --------->AHL20(2) ------>ATHB12         ----------->GT1              --------->TOE2(3)             --------->AHL20(2) ------YAB1           <---------TOE2(3)            <---------ICU4                 --------->YAB1 --->CCA1(2)       <---------AHL20(2)              --------->YAB1              --------->YAB1     <-- -->ARR14(2)      --------->AHL20(2)              <---------ATHB12            <---------YAB1 -------- ---ARR14(2)<---------AHL20(2)                  --------->WOX13(1)       ----------->GT1  --------->AHL20(2)   tgatttggacagatttaaaattttatggaaaattgagtaaacacacatatcaatcatcaatccattgaaatcaacaagtgataataaaaaaattaactct  4601100                                                                                    ------>MYB46(1)                                                                                    --------->MYB52(1)                                                                                    ------>MYB83                                                                                  <---------MYB111(1)                                                                                  <---------MYB59                                                                                  <---------MYB46(2)                                                                                 <---------ANAC55(2)                                                                                 --------->ANAC55(2)                                                                            --------->YAB1                                                                            <---------ICU4          <---------MYB46(3)                                               <---------AHL20(2)          --------->MYB46(2)                                               --------->ICU4          --------->MYB52(2)              --------->ANAC46                 <---------ATHB12  <-----------GT1                        --------->ZAT14                   --------->AHL20(2) --GT1    --------->MYB111(1) <---------AHL20(2)                           <---------ATHB51 --------DOF2           ----------->GT1  <---------ZAT14            <------ZmHOX2a(1)            <--- ->ZAT6 <---------MYB52(1)    --------->AHL20(2)            ------>ZmHOX2a(1)  <-----------GT1 <-----   cttttttctcgttagttagaatcgaatggtaaaaaaatactactacacaatttctaattttcctacagaaggagcaaataattacctaaccttctaagta  4601200                                                        --------->MYB52(1)                                              <------------CBF                                            <---------YAB1--------->DAG2                                          <---------At4g35610  <------NtERF2                                         <---------ARR14(2)  --------->RAP2.6(2)                                         --------->ARR14(2)  <----------ID1               <----------DOF2                       ---------->DOF2   --------->GLK1(2)*TSS------>NtERF2             --------->At4g35610        <------------CBF                <---------GLK1(1)---------->DOF2                <---------At4g35610      --------->ARR11(3)       <---------ALFIN1    <---------ZAT18              --------->ATHB12 ---------CBF     ---------->ID1  <----------DOF2  --------->ZAT18             <-------TEIL        <- ----AHL20(2) <----------DOF2 <-----------------AGL1    ---------->DOF2        <---------YAB1--------   attgagaaggtattgactttgtcttcaaagcctccactttgggaatctgattgtgaactaaaggcgccaaatcgaaacagtttcattgggagctttcatc  4601300                                                        --------->MYB52(2)                                                      <---------MYB52(1)                                                    <---------YAB1                                                    --------->ANAC55(2)                                                    <---------ANAC46                                                    <---------ANAC58                                                    <---------ANAC58                                                    <---------ANAC55(2)                                            --------->GLK1(2)      <---------LBD16                       --------->ARR14(2)------>ZmHOX2a(1)      --------->LBD16                       <---------ARR14(2)--------->LBD16 <---------ANAC58    <---------LBD16                 <---------O2    <---------ANAC55(1)       <---------ANAC58 --------GLK1(2)                    --------->O2 <---------MYB52(1)  ----------->GT1              --- ->YAB1               <----------DOF2 ----------->HVH21 <---------MYB46(3)    <---------ANAC46    <--   aaattctctggggaaagactcaatctttttgtattttctcgtgacaaatctgttacgtttgttcctgaatatcgaaaattgcgagagtttctctagtttc  4601400                                                       ----------->GT1                                             <---------ANAC58                                          <----------DOF2            ---------->DOF2           <---------CCA1(2)<---------ANAC55(2)     --------->ANAC46              <-------TEIL      --------->YAB1 ------>At4g35610              --------->DAG2<---------ANAC46            <---------GLK1(2)         -- -------At4g35610             ---------->DOF2<---------ANAC58    --------->LBD16         --------->TOE2(3)   agcttctaagtcaccaaagaggctattggaagaaaagttcatctctttcttggaatcatgtaaaacccagaaacagcttcttcaaattcaatctcaaacc  4601500                              <---------DEAR3(2)                           <-----------HVH21                          <---------ANAC55(2)                          --------->ANAC46                          <---------ANAC58                          <---------ANAC58                                       --------->ANAC58                          --------->ANAC55(2)      <---------MYB46(3)            --------->ANAC58                          --------->bZIP60(1)    <---------ANAC58                --------->ANAC46                          <---------bZIP60(1)    <---------ANAC46               --------->SPL7                          <---------bZIP60(2)    <---------ANAC58               ------->TEIL                        <---------TGA2(2)    <---------At4g35610               <---------ALFIN1                     <---------ICU4         <---------DEAR3(1)               --------->ANAC58                     --------->YAB1       <-----------HVH21                  --------->ANAC58                     --------->ATHB12    --------->O2                        <---------ANAC55(2)   -- <-----------HVH21  <---------YAB1       <---------O2                   --------->ATHB12          <-- ------->SPL7       --------->ICU4 --------->LBD16 <-----------RAV1(1) --------->ICU4       ---------   gtatgtcacgagttactacagaatgattacgtcgctccgagactcgtcgctgcttgttgccgaatcacgagaattgattacgcacgccaagtgttcgaca  4601600           ------>MYB83           ------>MYB46(1)                                      <----------DOF2                    -- ------->GLK1(2)                                         <---------ARR11(3)                        <- -------GLK1(2)                      <---------AHL20(2)  --------->ARR11(3)                       --- >ETT(2) ------->GAMYB           <---------YAB1      ---------->DOF2       <-----------RAV1(1)-------   gaatctctcaaccaaatgtttctgtttggaatgctatgtttaatgggtatgcacaaaaagatttgtcttttgaagttttgttgttgttcaagagaatgag  4601700                                                                  <------ZmHOX2a(2)                                                                  =======================HOX2a_HOX2a                                                                 --------->ARR11(3)                                                                 <---------ARR11(3)                                                                 --------->ARR14(2)                                                              <---------TOE1(3)                                                              <---------TOE2(3)                                                         <---------MYB46(3)                                                   <---------ANAC46                                                   <---------ANAC55(2)                                               <---------ANAC58  <---------ARR14(2)                                               <---------ANAC58 <------ZmHOX2a(1)                                      <---------ZAT6    <---------YAB1                                  --------->LBD16  --------->ANAC55(2) <----------DOF2                  <---------MYB52(1) ----------->HVH21 ------->HSFC1(2)                --------->ANAC46  <---------ANAC58======================HOX2a_HOX2a --------HSFC1(2)               <---------HSFB2a(2)<---------ANAC58------>ZmHOX2a(2) ------>GLK1(2)                 --------->HSFB2a(2)<---------ANAC55(1)                 <---------At5g28300 -->YAB1                <-----------GT1    ---------->DOF2<-------GAMYB           <------ZmHOX2a(1)   aagctttgatgtgatgcccaattgttttactcttcccgtagttttaaaagcttgcgtgatggttaaggatcttagacagggagaggagttacagtgtttt  4601800  Previous    Next  AGI:  At1g13410.1    Description:  binding. similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT4G02750.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO42148.1); contains InterPro domain Pentatricopeptide repeat (InterPro:IPR002885) Range:  from: 4601258    to: 4603295    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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