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Chromosome 1
Chromosome 2
Chromosome 3
Chromosome 4
Chromosome 5
Position
Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
Go to graphical and table display
1 10 20 30 40 50 60 70 80 90 100
-------->
AHL20(2)
--------->
AHL20(2)
----->
TOE2(3)
<---------
AHL20(2)
------>
GT1
--------->
AHL20(2)
--------->
AHL20(2)
----
TOE2(3)
<---------
AHL20(2)
--------->
AHL20(2)
----
TOE1(3)
--------->
AHL20(2)
<---------
TOE2(3)
--------
--
AHL20(2)
<---------
AHL20(1)
<---------
TOE1(3)
<---------
ATHB12
-
AHL20(2)
<-------
TEIL
<----------
DOF2
<---------
AHL20(2)
--------->
YAB1
<-------
gttaaaattccatatacatacaatttaatttctcatcttttaaatatgtgtgtttaatgttataaaataaaacatctaatcgaaatcaagacgattttaa
3973500
<---------
YAB1
--------->
YAB1
<---------
YAB1
<---------
AHL20(2)
<---------
AHL20(1)
--------->
AHL20(1)
--------->
AHL20(2)
<---------
ZAT6
--------->
DAG2
------->
TEIL
----------->
GT1
---------->
DOF2
--------->
CCA1(2)
<-----------
GT1
<-
<----------
DOF2
--------->
ICU4
<---------
AHL20(2)
<---------
AHL20(2)
<-
--------->
TOE2(3)
--------->
YAB1
--------->
AHL20(2)
<-----------
GT1
<-----------
GT1
---
->
AHL20(2)
<---------
AHL20(2)
<---------
YAB1
<---------
ARR11(3)
--------->
AHL20(2)
---
--
AHL20(2)
--------->
YAB1
--------->
YAB1
--------->
ARR11(3)
--------->
ATHB51
<--
tcaactttagtgttaatataataataaagttatcacaattaaacgatagatatgtatatactaatcgaattatttatctgtttgtaacgaattggcagaa
3973600
==============================================
bZIP_DOF
--------->
ANAC55(2)
--------->
ANAC58
--------->
O2
<---------
ANAC55(2)
--------->
bZIP60(1)
--------->
ANAC46
<-----
--------->
ANAC58
<------
ZmHOX2a(2)
<---------
bZIP60(1)
--------->
ARR11(3)
<------
MYB83
<---------
TGA1a
<---------
AGP1
----------->
GT1
<---------
ARR11(3)
<------
MYB46(1)
--------->
AGP1
--------
YAB1
--------->
MYB59
<---------
At5g28300
<-----------
GT1
------
--------
AHL20(2)
<---------
O2
--------->
REM1(2)
<---------
ICU4
------>
ZmHOX2a(2)
------>
AHL20(1)
--------->
TGA1a
<---------
ANAC58
--------->
AHL20(2)
----------
------>
AHL20(2)
<-----------
HVH21
<---------
ANAC58
--------->
ICU4
--------->
CCA1(2)
-------
AHL20(1)
------->
TEIL
<-----------
GT1
<----------
DOF2
---------->
DOF2
<------
tataataggtagtatttggtaaatgtatcacgtcaaattactgtccgtgttgaaaacaaatgttctttggaaatatttactcaaagatctaaatccatat
3973700
--------->
ARR14(2)
<---------
ARR11(3)
<---------
ARR11(1)
<---------
CCA1(2)
------>
MYB83
<---------
ATHB12
--------->
YAB1
-
--------->
ANAC58
<---------
YAB1
----
--------->
ANAC46
--------->
TOE2(3)
<----
--------->
ANAC58
--------->
ATHB12
------
<---------
ALFIN1
<---------
ICU4
--------
----
ARR11(3)
------>
MYB46(1)
--------->
YAB1
------------>
CBF
--->
ARR11(3)
--------->
AtMYB61
<---------
YAB1
<---------
ATHB12
<---------
ICU4
<-------
------->
AGL3
------->
GAMYB
<-----------
RAV1(1)
--------->
ICU4
--------->
YAB1
<-------
---
CCA1(2)
--------->
MYB46(3)
<---------
ANAC46
--------->
LBD16
--------->
YAB1
<--------
attgttctccactcaaccatccatatctattgttgtgtttgaaacgatttgataccgcaaatcattaatagaaaatactaataataagagagcaatatat
3973800
--------->
TOE2(3)
--------->
ANAC58
----------->
GT1
<---------
ICU4
--------->
ANAC58
--------->
AHL20(2)
-------->
YAB1
--------->
At5g28300
----->
YAB1
--------->
LBD16
-----
AHL20(2)
----------->
GT1
----------->
HVH21
----
--->
AHL20(2)
--------->
TOE2(3)
<---------
At4g35610
------
->
AHL20(1)
<---------
ANAC46
--------->
At4g35610
---------
--
AHL20(1)
------------>
CBF
<---------
AHL20(2)
<--------
--
ARR11(3)
<-------
TEIL
<-----------
GT1
--------->
AHL20(2)
---------
---
TBP
--------->
YAB1
----------->
TBP
--------->
AHL20(2)
*
TSS
--------->
TOE2(3)
aataagaacgtaaattcaaaaatagcatacatatatgtctatatatacaataccgtaaataaaaaattactccg
atgacaaaacctctaagcatctagaa
3973900
---------->
DOF2
----------->
GT1
<----------
ID1
<---------
TOE2(3)
---------->
DOF2
<---------
AHL20(2)
----------->
GT1
<---------------
AGL15
------->
GT1
--------->
ATHB12
--------------->
AGL15
---->
DOF2
--------->
ICU4
<---------------
AGL15
>
HSFC1(1)
<---------
YAB1
----------------->
AGL3
<-
-
HSFB2a(2)
<----------
DOF2
------->
MYC3
<---------
ARR14(2)
<-----
>
HSFB2a(2)
<---------
ATHB12
<---------
AtLEC2
<-------
MYC3
--------->
ARR14(2)
------
agaaaaa
atgaaaaatacttcaatctttctagttgtctttgccctatgcatgattagcaatgcatatggccattcgaatccatttaaaggaaaaaagacg
3974000
<
--------->
YAB1
--------->
ARR11(3)
-
<---------
YAB1
--------->
ARR14(2)
---------->
DOF2
<---------
LBD16
------
GAMYB
<----------
DOF2
<---------
ARR14(2)
<-------
TEIL
-----------
----
O2
<------
ZmHOX2a(1)
<-------
TEIL
<---------
ATHB12
--------->
CCA1(2)
--
--->
O2
<---------
LBD16
--------->
MYB46(3)
----------->
GT1
--------->
ICU4
<---------
ARR11(3)
---
tcgttgttattcaggaacagtctttctcacaacaaatggctcaaggtacgttgtaaatctggggacaatgatgttcgtgaaagatatatgaaacctggag
3974100
---------->
DOF2
---------->
DOF2
<---------
MYB52(1)
<---------
ZAT18
<-------
TEIL
---------
ARR14(2)
<---------
bZIP60(1)
--------->
ZAT18
<---------
At4g35610
-------->
ARR14(2)
--------->
bZIP60(1)
<---------
ANAC46
--------->
At4g35610
>
RAV1(2)
----------->
STF1
<-----------
RAV1(1)
<---------------------
WRI1
------->
ATHB12
<---------
TGA2(2)
<---------
DAG2
<<<<<<<<<
EIN3
----------->
GT1
-------->
ARR10
----------->
TGA1
<----------
DOF2
----------->
GT1
--------->
ANAC46
-------
aagattggggttttagtttccacgatgacgttatgggagaaacacttttctggtgtacaatgtataaaggagctgattacaaggtacaaaagaagtttga
3974200
--------->
YAB1
<---------
ICU4
--------->
ICU4
--------->
YAB1
<---------
YAB1
<----------
DOF2
<
----------->
GT1
--------->
YAB1
------
<---------
ANAC58
--------->
WOX13(1)
-------
<---------
ANAC58
------>
ZmHOX2a(2)
<-------
<---------
ANAC46
<------
ZmHOX2a(2)
<---------
ARR14(2)
<------
NtERF2
<-----------
RAV1(1)
--------->
ARR11(3)
--------->
ARR14(2)
---->
HVH21
<---------
MYB46(3)
<---------
ARR11(3)
<---------
SPL7
cgcatatgttcaagacaagagaatgcctcatggtggctcgtataattatgttgctcaagaagatgggatctatcacagtactttgatacaccgtatgcgg
3974300
--------->
ATHB12
<---------
YAB1
---------
ARR11(3)
----------->
GT1
<---------
ARR11(1)
--->
LBD16
<---------
YAB1
<---------
TOE1(2)
--------->
ARR11(3)
-->
ANAC46
<---------
TOE2(3)
<---------
TOE2(2)
--------->
AHL20(2)
--------->
ATHB12
----
--
LBD16
<---------
WOX13(1)
------>
ZmHOX2a(1)
--------->
YAB1
<---------
CCA1(2)
------
aagatgtatgattggaattag
ggatgttgataaaactctcctatgtttatccaatatttataaaatgcttattcaaatctttgatttgatatagttgtaa
3974400
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AGI:
At1g11765.1
Description:
S1 self-incompatibility protein-related. similar to self-incompatibility protein-related [Arabidopsis thaliana] (TAIR:AT3G26880.1); contains InterPro domain Plant self-incompatibility S1 (InterPro:IPR010264)
Range:
from: 3973875
to: 3974508
Orientation: Forward
Links:
TAIR
MIPS
Please cite the corresponding
publications
when using AthaMap.
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