Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                           --------->ZAT6                                                                                      <-------TEIL                                                                                     --------->CCA1(2)                         -------->P                                                 --------->ARR14(2)                <---------TOE2(3)                                            <---------ZAT2               --------->YAB1                                                ----------->RAV1(2)           --------->ATHB12                                                  --------->ZAT2         --------------->AGL15                                               --------->At4g35610        <---------At4g35610                                                  <---------At4g35610        --------->bZIP60(2)                                                <-----------RAV1(2)    <-----------HVH21    ------>MYB46(1)    --------->ARR11(3)           <-----------HVH21        ---    <-----------TGA1     ------>MYB83     --------->ICU4    --------->At4g35610     <---------ARR14(2)   caaaatcgtcacctcattgagaataccaactcgaggggagagaaatgattttggggactatgagctagaagtaagagtcagctgaagattcacagtagaa  3952100                                   <---------ALFIN1                                <-----------GT1                                <---------ARR14(2)                <---------AtMYB61                            <-----------GT1              --------->ATHB12                           <---------AHL20(2)           <---------YAB1               --------->YAB1   --------->ARR14(2)    <---------ZAT6           <---------At4g35610 ------>YAB1<----------DOF2--------->AHL20(2)         ----------->GT1          --------->At4g35610   tgaaaatgtctcatcttttatagtttgattttaatatccaccttgttttacttatagtgtgattagtttaggtgttcttggagatgaaaatgtctcattc  3952200                                                    <---------ANAC58                                                    <---------ANAC58                                               --------->ALFIN1                        ----------->HVH21                                               <---------ANAC46                      --------->O2                                               <---------ANAC58                      --------->ZAT2                   ----------->GT1         <---------ANAC58               <---------ANAC58              <---------YAB1               <---------ANAC46               <---------ANAC58  ---------              ----------->TBP              <---------ANAC58             --------->ARR11(3)  <--------          <---------WOX13(1)           <------------CBF     --------->ANAC55(2)      --------->At4g35610       <---------YAB1         <---------YAB1   <---------ANAC58------->TEIL        <-----------RAV1(2)   aatatggttttgatttataaatggctaatattcttcttgtttattgctggtgtggctagtttatgtatttgttagagcttgtgaaccaggtgactgaaca  3952300                                                                                             --------                                                                                             --------                                                                                             --------                                                                                            <--------                                                 <------------CBF                          --------->MYB52(1)                                                --------->ATHB12                          <------ZmHOX2a(2)                                              <----------DOF2                            --------->ARR11(3)                                             <---------ANAC58                           --------->At4g35610                                          <---------WOX13(1)                            <---------At4g35610                                  <---------ANAC58                                   <---------At4g35610   <---------YAB1           --------->ATHB12 <---------ANAC58                       <-----------HVH21 --------->YAB1    <-----------HVH21     <------------CBF ------------>CBF    <---------ARR14(2)    - >ZAT14           ------->GAMYB   <---------ANAC58      ----------->GT1       --------->ARR14(2)   -- -ZAT14          --------->MYB46(3)<----------DOF2    ---------->DOF2        <---------GLK1(1)     <-   gttttataatcgatttctaaccatcagacatgtttggctttcagattgcttcattggaaagtcaatacaaatcaaatgggtttctgcatcagatcacggc  3952400  <-----------RAV1(2) ->ANAC58            <-----------GT1                                                                - ->ANAC46   --------->GLK1(2)                                                                   ----- ->ANAC58   --------->ARR14(2)                            <---------ICU4                        ----- -LBD16  <---------TOE2(3)                                --------->ATHB12               --------->ANAC58 -------->ALFIN1  --------->YAB1    <---------YAB1       <---------YAB1            <----------DOF2  - ----->PIF5 <---------ARR14(2)   <---------YAB1    <----------DOF2     --------->TOE2(3) --------->ANAC46 ------PIF5<---------GLK1(2) <------------CBF      ------>ZmHOX2a(1) <---------AHL20(2)  --------->ANAC58   aagtgcaggttaagaatctgtgataacctttcattgtgattactgattcagtccttttgatgatttcttattttcttaaccaagacttttcaaggaagaa  3952500                                        --------->LBD16                                       --------->HSFB2a(2)                                       <-----------RAV1(2)                                    --------->PCF2          ----------->RAV1(1)                                   <-----------HVH21   <---------MYB52(2)           --------->ARR11(3)                           --------->DAG2             <------NtERF2                 <---------ARR11(3)           <---------RAP2.6(2)    --------->At4g35610------>NtERF2       <---------ZAT14 -------->ANAC58          ---------->DOF2    <---------ARR14(2)     <------ZmHOX2a(1) ---->ANAC58 <---------At4g35610  <---------At4g35610<---------ATERF1(1) --------->ZAT14      >>>>>>> ---->ANAC58 --------->At4g35610<-----------RAV1(2) <---------DEAR3(1)   --------->ZAT18  --------->At4g35610 -------->ANAC58    <------ZmHOX2a(1)  <---------HSFB2a(2) --------->MYB46(3)   ---------->DOF2     -   gcaaggaagaatggctgcttcaggaccaaaaagctcaggtcccagaggttttgggcgacgaacaacagtaggaagtgctcagaaaagaactcagaagaag  3952600                                                                            --------->ALFIN1                                                                         --------->DAG2                                                                        ---------->DOF2                                                                     --------->ZAT2                                                                     <---------At4g35610                                                                     <---------ZAT2                                                                     --------->At4g35610                                                                  <------NtERF2                                                                  <---------At4g35610                                                                  --------->LBD16                                               <---------LBD16   --------->ANAC46                                              <---------LBD16    --------->ANAC58                   <                                    --------->MYB52(1)           --------->ANAC58                  <-                                   ------->GAMYB--------->LBD16 <---------LBD16                   <--                                  --------->MYB46(3)            --------->ATERF1(2)        ----------      ---------->DOF2             <---------MYB52(2)            <---------ATERF1(2)     --------->ANAC58 >>TBF1   <---------ARR11(3)      <---------MYB55(2)       --------->At4g35610          --------->ANAC58 ---------->GT1                 ----------->RAV1(1)        <---------At4g35610 <---------------AtSPL3   aatggtgaaaaagatagtaatgccacttctacagcaacaaacgaggtttcagggattagtaagttgcccgcagctaaagtggatgtacagaagcaaagct  3952700                                                                                      --------->ATHB12                                                                                     --------->ICU4                                                                                     <---------YAB1                                                                                   --------->YAB1                                            <------ZmHOX2a(1)                   --------->YAB1                                    <---------ARR14(2)                         <---------ATHB12                                    --------->ARR11(3)                         --------->ICU4                                    --------->ARR14(2)                  --------->MYB46(3) ---------MYB52(1)             <-----------HVH21                  --------->ANAC58--------->ICU4 ------GAMYB                  <------MYB46(1)           ------>ZmHOX2a(2)--------->MYB52(1) ---------RAV1(1)             <------MYB83<---------TOE2(3)       --------->ANAC58<---------YAB1 >DOF2<---------YAB1         --------->MYB59===================HOX2a_HOX2a --------->MYB46(3)       -   ctgttgttttgaatgagagaaatgtgttagataggtcggatattgaggatggaagtgatcgtttggacaagaaaacaaccgatgatgatgatttgttaga  3952800                                 <------ZmHOX2a(1)                               <---------TOE2(2)                        <---------HSFB2a(1)                        <---------HSFC1(2)                        --------->HSFC1(2)                        --------->HSFB2a(1)                       <---------ARR11(3)                       --------->ARR11(3)                       <-----------ARR10                            <---------ANAC58                       --------->GLK1(2)                            <---------ANAC58                       --------->ARR14(2)                --------->LBD16                          <--              ---------->DOF2  <---------TOE1(2)         ----------->GT1                    ---------   ----------->GT1     <---------ARR14(2)              <---------At4g35610                  <--------  ----------->GT1     <---------GLK1(2)                --------->At4g35610                  ------->TEIL --------->DOF2       <---------ARR14(1)               <---------LBD16                     <---------CCA1(2)   acaaaagttaaaacttgaaagagagaatcttcgtaggaaggaaatagaaacgcttgcagcggaaaatttggcgagaggtgatagaatgtttgtgtatccc  3952900                                                                                             <-------                                                                                        <---------ANAC58                                                                                        <---------ANAC46                                                                                        ----------->GT1                                                                                        <---------ANAC58                                                 --------->ETT(2)                      <------NtERF2                                                 <---------ETT(2)                     ------>NtERF2                                           --------->GLK1(2)   ------->GAMYB         <---------DEAR3(1) -------MYB52(1)                          <---------GLK1(2)   <---------MYB52(2)     <---------RAP2.3(3) >ARR14(2)                               <------ZmHOX2a(1)  --------->MYB52(1)  --------->ATHB12 -ARR14(2)                  --------->ALFIN1   <-----------HVH21 ------->TEIL   <---------ICU4<------   gttattgtgaaacctgatgaagacatagaagtgtttctcaacaggaatctgtcgactctgaataacgaacccgatgttttgatcatgggggcgtttaacg  3953000  Previous    Next  AGI:  At1g11720.1    Description:  ATSS3 (STARCH SYNTHASE 3); starch synthase/ transferase, transferring glycosyl groups. similar to ATSS4/SSIV (STARCH SYNTHASE 4), transferase, transferring glycosyl groups [Arabidopsis thaliana] (TAIR:AT4G18240.1); similar to Soluble starch synthase 3, chloroplast precursor (SS III) (Soluble starch synthase III) (GB:Q43846); similar to unnamed protein product [Vitis vinifera] (GB:CAO17942.1); similar to soluble-starch-synthase [Solanum tuberosum] (GB:CAA64173.1); contains InterPro domain Starch synthase III (InterPro:IPR009756); contains InterPro domain Starch synthase catalytic region (InterPro:IPR013534); contains InterPro domain Glycogen/s Range:  from: 3952511    to: 3957044    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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