Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                 --------->ALFIN1                                              <-------PIF5                                              --------->TOE1(2)                                              ------->PIF5                                             <---------O2  --------->YAB1                                             --------->TGA1a    <---------RVE1(1)                                             <---------ANAC58   <---------CCA1(1)                                             <---------TGA1a   <---------ARR11(3)                                             <---------ANAC46 --------->YAB1           <-----------GT1                   <---------ANAC58<---------YAB1 ---MYB46(3)                     ----------->GT1       ------->TEIL <---------AHL20(2) -->MYB52(2)                 ==========================bZIP_DOF--------->ARR11(3) <---------REM1(1) -->MYB.PH3(2)               ---------->DOF2------->TEIL  <---------YAB1  <-----------GT1   tactaaaactaattcacacatttttatcaccaaaagagcaaaaatggacgtgggatgaatatgatgatattttttttgaccttgttgtagggtctctcac  3722500                                                       <---------ALFIN1                                                <---------ANAC58                              -------                <---------GLK1(1)               <---------ANAC58                              -------           ---------->DOF2 <----------DOF2     XXXXXXXXXXXXXXXXXXXX>MIR3440B-5P              <-------          --------->AHL20(2)            <---------At4g35610                          ------>NtERF2   tctcttcttccattaaagaattctcagagcttttcttacttcaactgttttcttggcccatctcactgaaataagtgtgataaactctgcctgttacatt  3722600                       ------->GAMYB                                                               <-                      --------->ANAC55(2)                                                     -------                      <---------ANAC55(2)      --------->YAB1                                 <------       <---------YAB1 --------->ANAC58         --------->AHL20(2)                             -------      <---------AHL20(2)     <---------ANAC55(2)                                              <------      --------->AHL20(2)     --------->ANAC55(2)  <---------ICU4                              ------- -->TOE2(3)           --------->ANAC58       --------->AHL20(2)       <---------DAG2         <------- -------->AGL15      >>>>>>>>>MYB98    --------->TOE2(3)              --------->TOE2(3)      -------- ----------AGL3     --------->MYB52(1)--------->REM1(1)    <---------CCA1(2)                 <-------   atttggattttaataggtgaagtaacggaatatgtaatctacatcaaaataatattcacttctatctctctaccttatggcattagaaaaatccaattat  3722700      ----------->GT1   ---------->DOF2 --------ANAC55(2) ->ATHB1 --HAHB4 -->YAB1                                       ---------->DOF2 ---ICU4                                     <---------AHL20(2) -->ATHB51               <---------REM1(1)   --------->AHL20(2) --ATHB12              --------->At4g35610   --------->YAB1   --------->CCA1(2)                <----- ->ICU4        --------->YAB1          ----------->RAV1(1)   <----------ID1               <---------- --ATHB51      ----------->GT1    ---------->DOF2      ---------->DOF2            <-----------GT1   tacatgaaaggaaactatagtaattagatgaagcatagaagcgacaattaaaagacataaagagagacaagtcttggcaagttttctctgtttcacactt  3722800                                                         *TSS                        <---------ALFIN1                                                       <---------At4g35610          <---------ZAT14                ----------->GT1                <----------DOF2                      --------->ZAT14         --------->TOE1(3)                    <---------ANAC58                      <---------ZAT18   --------->ANAC58                           <---------ANAC58       <---------HSFB2a(2)   --------->ANAC58                       <---------MYB52(1)         --------->HSFB2a(2)  <----------DOF2 -----DOF2  ---------->DOF2              ----------------------->TaNAC69(2)       --------->ANAC46 -GT1    --------->TOE2(3)         ---------->DOF2    --------->ANAC46          --------->ANAC46   tggagacgaaaccttaaaggcttaaaactgagaaaaacaaagccgttggcttttgtaagccgctcgttcttcgagacaaaacacactacactctttctct  3722900                                                                                    <---------ARR11(3)                                                                                    --------->ARR14(2)                                                                                    --------->KAN4(2)                                                                                    --------->ARR11(3)                                                                                    <---------ARR14(2)                                                                                   <---------HSFB2a(1)                                                        <---------YAB1             <----------TaMYB80                                                      <---------ICU4               --------->HSFB2a(1)                                                     <---------ATHB51              --------->KAN4(1)                                                     --------->ICU4                <---------KAN4(1)                                                --------->ANAC58                   <---------GLK1(1)                                                --------->ANAC58      <----------DOF2                                             --------->TOE1(2)    <-----------GT1 <---------KAN4(2)                        <----------DOF2   --------->GLK1(2)     <---------DAG2    ---------->TaMYB80                <----------DOF2           --------->ARR14(2)    <----------DOF2 <------ZmHOX2a(1)            <---------CCA1(2)        ------>ZmHOX2a(1)--------->YAB1 <---------DAG2--------->GLK1(1)         <------------------------ANAC81  <---------ARR14(2) <-----------GT1 --------->YAB1   <------   ctcactcactcttcatctcttttcttctttctctctctcctaaaaatccgacgaaattatgattcactttaccttttaatcaggaatatccctgtttcac  3723000                                                                              --------->ANAC58                                                                     <---------YAB1               <<<<<<<<<TBF1                              --------->ARR14(2)  ----------->GT1            <<<<<<<<<TBF1                                 <---------ARR14(2)  --------->ANAC58      <<<<<<<<<TBF1  <<<<<<<<<TBF1       --------->HSFB2a(2)         <---------AHL20(2)    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)<---------HSFB2a(2)     <---------MYB52(1)   <<<<<<<<<TBF1  <<<<<<<<<TBF1       <-----------GT1     ------->TEIL--------->ATHB12 -----GT1<<<<<<<<<TBF1     ------>ZmHOX2a(1)             <---------CCA1(2)  ---------->DOF2   ccttcttcttcttcttcttcttcttcttcctcgtgttttttttccataacattccctctgaatcttcgttttttattggaaagaaacaatctaatccaag  3723100                                                                                                 ----                                                                                                 <---                                                                                                 ----                                     <----------DOF2                                             <---                              --------->CCA1(2)                                                <-----                      --------->At4g35610                                                 <----------DOF2                     <---------MYB46(3)                   <----------DOF2       ----------->HVH21----   ttcaagggttttctcatcttcagtggctgaagttatgagctttacaagatgggaagtgttctttggtctctctgttttagccttgacaatgcctttctca  3723200     <-----------GT1        --------->GLK1(2)                      --------->WRKY38(1) ------->RAV1(2)           --------->YAB1                          --------->WRKY45        <---------ZAT18 ------At4g35610          --------->ICU4                         <----------DOF2           --------->ZAT18 ----->ZAT2 --------->TOE2(2)                                   <---------ANAC58           --------->ZAT14 ------ZAT2 --------->TOE1(2)                      <---------AHL20(2)          <----------DOF2 ------RAV1(2) --------->ANAC46                   <---------AHL20(2)        ------>ZmHOX2a(1) ------- ----->At4g35610     ----------->GT1    ---------->DOF2         <---------ANAC58        <---------ANAC46   gctggagttactaatctacgagatggtaataatctttctctgcaaagttttttttatttggattttgctttgactctccttcttttggtttagtgaacac  3723300                                                                                                 ----                                                                                            <--------     <---------AHL20(2)                                                                    <---------ARR14(2)   <---------RVE1(1)                                                                       <---------GLK1(2)  <---------GLK1(2)                                            --------->ANAC58     <---------At4g35610  <---------ARR11(3)     <---------ZAT6          <---------TOE1(3)      <---------At4g35610--------->ARR14(2)  --------->ARR11(3)   ----------->GT1           <---------TOE2(3)   ---------->DOF2--------->At4g35610 -->ZAT6          <---------ANAC46    --------->REM1(1)        --------->ANAC58<---------HSFB2a(2)   tctagattttttttagacttgtgtctagtgaaaatgacttacatcagttttagggtaaactaggtaagcaatatagctgtttgggaagctccagattggc  3723400  Previous    Next  AGI:  At1g11130.1    Description:  SUB (STRUBBELIG); protein binding. Identical to Protein STRUBBELIG precursor (SUB) [Arabidopsis Thaliana] (GB:Q8RWZ1;GB:O04081;GB:Q9SXA2); similar to SRF3 (STRUBBELIG-RECEPTOR FAMILY 3), ATP binding / kinase/ protein serine/threonine kinase [Arabidopsis thaliana] (TAIR:AT4G03390.1); similar to LRR receptor-like kinase [Solanum tuberosum] (GB:ABS89271.1); contains InterPro domain Protein kinase, core; (InterPro:IPR000719); contains InterPro domain Protein kinase-like (InterPro:IPR011009); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611) Range:  from: 3722857    to: 3727450    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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