Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                  --------->At4g35610  ----------->TBP  --------->ANAC55(2)                <-------GAMYB        --------->AHL20(2)                            --------->AHL20(2)               <---------MYB46(3)    <---------AHL20(2)     <---------AHL20(2) --------->AHL20(2)   <               --------->MYB52(2) ------->TEIL        <---------ANAC55(2)      <---------ARR11(3)----       <---------YAB1      <---------AHL20(2)       <-----------GT1          --------->ANAC58    <---     <---------AHL20(2)    --------->AHL20(2)       --------->AHL20(2)       --------->ANAC58   <----   tttgtgtttatttttgtccgttgcaaaatttatatgtatataaataagaagaaattacatattttttttttttgtcaacaagaaattacatagtttgata  3684200                                                       <---------AHL20(2)                                                      --------->AHL20(2)           ---------->DOF2                        <---------YAB1                            ---------   <---------ICU4                               <-----------GT1    ----------->GT1          <--------   --------->ATHB12                      <---------ANAC55(2)   --------->ARR11(3)        --------->ARR14(2)  --------->ICU4                         --------->ANAC55(2)   <---------ARR14(2)        <---------ZAT14  <---------YAB1                       --------->CCA1(2)      <---------CCA1(2)          --------->ZAT14 ---------ICU4                        <---------ARR14(2)   <---------AHL20(2)            <---------ARR14(2) ----->ANAC55(2)                     --------->At4g35610  <---------AHL20(2)         --------->ZAT6 ------ANAC55(2)         ------->GAMYB--------->ARR14(2)  --------->AHL20(2)        <---------At5g28300 ---TEIL<-----------HVH21----------->GT1<-------TEIL  <---------AHL20(2)           <-----------GT1   cataatgatttgtcaaagcattttcaacagaaaaaaatcagatacatattttactattaattttatatctggtaaattctatattttacagtatacagta  3684300                                                                     --------->YAB1                                                                  <------------CBF                                                              --------------->AGL15                                                              <---------------AGL15                                                             ----------------->AGL1                                                             <-----------------AG            ------>ZmHOX2a(1)                                <-----------------AGL1            --------->LBD16                                  ----------------->AGL2          <---------LBD16          <---------------AGL15     <-----------------AGL2          ----------->RAV1(2)      ============================================MADS_MADS       ------ ------>AtSPL8              --------->AHL20(2)     --------->AHL20(2)----------->GT1      ----------- -------AtSPL8     --------->At4g35610      --------->YAB1<----------DOF2             --------->AHL20(2)   cattacacaatttcctgaatcagttgaatataaaatgctcaaactagcataaatttaaaactttccagcattggtaatactcaaaaaaaaaaatcaataa  3684400                                                                                               ------                                                                              <----------DOF2  ------                                                                           <-----------GT1     ------                                                                          <-----------GT1      ------                                                                      <----------DOF2       ---------                                                                  <---------ZAT14         <---------TOE2(3)                                                                  <---------ZAT18        ---------->DOF2                                                                --------->ZAT18     <---------WOX13(1) <---------AHL20(2)                                             <---------ZAT18    <------------CBF --------->AHL20(2)                                            <---------ANAC58  <---------YAB1------ --->YAB1                                          ----------->GT1--------->ZAT18<---------AHL20(2) ->CBF                  --------->ANAC46  ---------->DOF2      <---------ANAC58  --------->AHL20(2)--   caaataaatgtttagttgtaattcagacacaacttgaaaccccaaaaatcagactgtgaaaatttgtgtgctctttttaacttttaattgctaaagttag  3684500                                                                        --------->YAB1                                                                        ----------->GT1                                                                     <---------ICU4                                                                    --------->ICU4     <---------AHL20(2)                                             <---------YAB1     --------->AHL20(2)                                           --------->YAB1 --->MYB111(1)                                                    -------->HAHB4 --->MYB52(2)                                                    <---------YAB1 --->MYB46(2)                             <---------At5g28300   <---------TOE2(3)   ------->GAMYB --->MYB111(2)                           <-----------GT1     <---------AHL20(2)    --------->MYB46(3) --->MYB.PH3(2)                         <---------YAB1       --------->AHL20(1)   --------->RAP2.6(3) --->MYB59   --------->GLK1(2)        <---------ICU4         --------->AHL20(2)<---------MYB52(2)<--- --------->GT1                 <---------ZAT6  ----------->GT1<---------AHL20(2) --------->MYB52(1)   ttagtaatttaaaacattctggttactcacttagtattagttattactgtggtaacaacaaaatttaatgataattgtaaaactaacggccaatcgcatt  3684600                          --------->TOE1(2)                         ------>ZmHOX2a(2)                        <------ZmHOX2a(2)                       --------->ARR14(3)                       <---------ARR11(3)                       <---------AGP1                       <---------ARR14(2)                       <-----------ARR10                       --------->ARR14(2)                       <---------ARR14(3)                       --------->AGP1                       --------->ARR11(3)                  --------->ANAC46                  --------->ANAC58                         --------->LBD16              --------->ZAT2                              <---------HSFB2a(2)              <---------ZAT2                     ---------->ID1              <---------At4g35610          <---------AHL20(2)              --------->At4g35610         --------->AHL20(1) <---------At4g35610  <---------CCA1(2)   <---------AHL20(1)--------->LBD16 --------->At4g35610 ----------->ARR10 --------->AHL20(2) --------->HSFB2a(2)                       - --------RAV1(1)  --------->ANAC58  <----------DOF2<----------DOF2                     --------->TOE2(3)   tgctgctctcttcttcagctacgcagatcttacgagcacttttatatatttgtctttcttcccgaaatacccttgtttcgattttctcacctaaaactct  3684700                                                          <------NtERF2                                                          --------->RAP2.3(1)                                                         ------>NtERF2                                                         <------NtERF2                                                         <---------ATERF1(1)                                                        ------------------>SPL14                                                        --------->RAP2.6(2)                                                        --------->RAP2.3(2)                                                        --------->DEAR3(1)                                                        <---------DEAR3(1)                                                       --------->ATERF1(1)                                                       --------->RAP2.3(1)                                                       --------->SPL7                                                   ------>MYB83                                                 --------->TOE2(2)              <---------ARR14(2)                                                 --------->TOE1(2)      --------->GLK1(2)                                                <---------HSFC1(2)     --------->GLK1(1)                                                --------->HSFB2a(1)    --------->ARR14(2)                                                --------->HSFC1(2)     <---------GLK1(1)                                                --------->DEAR3(2)     <---------ARR14(2)                                            --------->ANAC58       --------->LBD16                                            --------->MYB46(3)    <---------LBD16                                    <---------YAB1 ------>MYB46(1)<---------ANAC46                                    --------->ICU4--------->MYB52(1)<------NtERF2                                 <---------DEAR3(1)--------->SPL7<---------LBD16--------->ZAT18                                <------NtERF2  ------->TEIL  <---------MYB52(1)<------ZmHOX2a(1)                              <---------DEAR3(1)<---------HSFB2a(1)<---------LBD16   --------->MYB52(1)                         --------->O2       --------->ANAC58<---------SPL7 <---------ANAC46 -------->LBD16     --------->MYB46(3)      <---------MYB52(2)--------->SPL7--------->LBD16   tccccaaaaatttgcaaattcaacgactcgtctcggcgatgatggaacgaacctacggccgccgtaagccggggattccgaggaccctatcggactctct  3684800                                               --------->SPL7                                             --------->LBD16                                             ----------->HVH21                                            --------->DEAR3(1)                                           <------NtERF2                                       <-----------HVH21                                  ------>ZmHOX2a(1)                       <---------ARR11(3)  --------->ATERF1(1)                       --------->GLK1(2)   <---------LBD16                       <---------ARR14(2) <---------ATERF1(1)                       <-----------ARR10  ------>NtERF2                   ------>ZmHOX2a(1)                       --------->ARR11(3)<---------DEAR3(1)  --------->YAB1            --------->WRKY18(1)                       --------->ARR14(2)--------->DEAR3(1)  --------->ATHB12 <----------DOF2       -   aaacgactctgtttctcagactgagtatctctcttcctcttcgtcgccggacatcgagcccattgattactctctccttcctttctccagtcaagagtct  3684900                                                                        <---------------------WRI1                                                                       ----------->GT1        <------                                                                 <---------LBD16             <-------                                                                 --------->SPL7              --------                                                                <<<<<<<<<SPL7                <-------                       <-----------HVH21                       <---------SPL7          --------->MYB52(1)                     --------->LBD16                        <------------------SPL14  <------ZmHOX2a(1)                    <---------HSFB2a(2)            --------->MYB52(1) <---------DEAR3(1)     --------               <<<<<<<<<TBF1                    --------->ANAC46<<<<<<<<<SPL4      <-----------RAV1(2) ----->ZmHOX2a(1)   --------->HSFB2a(2)<------ZmHOX2a(1)   --------->ALFIN1 ---------->DOF2 ---------   tcctctctctggcattcttcttccaggtcaaatttcagagaggattatccacagaacggaggtgttgtacggagggcgaaaagagtcaggaacggtgctg  3685000                                                ----------->HVH21  <---------ZAT2                              --------->At4g35610  --------->At4g35610                         <---------ZAT2  --------->ZAT2                              <---------At4g35610  <---------At4g35610                    <------MYB46(1)                                       ------ ----CDC5                                <------MYB83                                         <------ZmHOX2a(1) --ZAT2                <---------ANAC58  <---------ANAC46                 <----------DOF2     ======= ->ZAT2<----------DOF2 <---------ANAC58 --------->MYB111(2)          --------->DOF5.7(2)    <-------- --At4g35610           <---------ANAC46 --------->MYB46(2)         ----------->GT1----------->HVH21 ->At4g35610       <----------DOF2 <------ZmHOX2a(1)              <---------TOE2(3)--------->ATHB12<- >ALFIN1        <---------ALFIN1<-----------RAV1(2)           <------ZmHOX2a(1)  <----------DOF2   ==   aggctgctgcttttacttccactttgcttgaggctcaggagtttggtgagctgatggagcatgaggatgaggttaactttgcgcttgatgggttgaggaa  3685100  Previous    Next  AGI:  At1g11050.1    Description:  protein kinase family protein. similar to RKF3 (RECEPTOR-LIKE KINASE IN IN FLOWERS 3), kinase [Arabidopsis thaliana] (TAIR:AT2G48010.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO24667.1); contains InterPro domain Beta-ketoacyl synthase, N-terminal (InterPro:IPR014030); contains InterPro domain Protein kinase, core; (InterPro:IPR000719); contains InterPro domain Protein kinase-like (InterPro:IPR011009); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) Range:  from: 3681888    to: 3684169    Orientation: Forward Links:  TAIR  MIPS    AGI:  At1g11060.1    Description:  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G61030.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO16922.1); contains domain gb def: Hypothetical protein T19D16.5 (PTHR22100:SF10); contains domain FAMILY NOT NAMED (PTHR22100) Range:  from: 3684568    to: 3689847    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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