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Chromosome 1
Chromosome 2
Chromosome 3
Chromosome 4
Chromosome 5
Position
Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
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1 10 20 30 40 50 60 70 80 90 100
----
<---------
AHL20(2)
--------->
AHL20(2)
---------->
DOF2
--------->
TOE2(3)
---------->
DOF2
--------->
LBD16
----------->
RAV1(1)
--------->
YAB1
--------->
HSFB2a(2)
--------->
REM1(1)
--------->
WOX13(1)
<---------
HSFB2a(2)
--------->
ZAT6
--------->
AHL20(2)
---->
DOF2
---------->
DOF2
<---------
ARR14(2)
----------->
RAV1(1)
------
agtcattcagaaagtttgagaaagtcaaaccctcttgttgagtaagagactatccagaagaaagaagagtaatctccaacactacaacacattaatttag
3535000
------>
MYB83
------>
MYB46(1)
<---------
ICU4
------->
GAMYB
--------->
ICU4
--------->
MYB46(3)
<---------
ATHB12
--------->
ANAC58
<-----------
GT1
<---------
ATHB51
--------->
ANAC58
--------->
AHL20(2)
--------->
YAB1
<-------
TEIL
-
----->
ARR11(3)
--------->
ATHB12
------>
ZmHOX2a(1)
<-----------
GT1
--------->
ICU4
<------
--->
MYB59
<---------
YAB1
--------->
TOE2(3)
--------->
ICU4
---------->
DOF2
-------
gtcttgtttagtttgtttatgattaaacaagtctcctcaataatgaagtgtcataaataagttatacaatcccttgttgtaaagatgcaaccaaataagt
3535100
<----------
DOF2
<--
<<<<<<<<<<
GT-3b
<------
MYB83
<---------
AHL20(1)
<------
--------->
ARR11(3)
<------
<---------
AHL20(2)
<------
MYB46(1)
<---------
ICU4
<------
--------->
AHL20(2)
--------
<---------
AHL20(2)
<-------
--------->
AHL20(2)
----------->
HVH21
--------
--------->
AHL20(2)
<------
MYB46(1)
--------
-------->
YAB1
--------->
AHL20(1)
----------->
GT1
--------->
ATHB12
--------
---
ANAC55(2)
<---------
ARR11(3)
<------
MYB83
<---------
MYB46(3)
--------
-->
ANAC55(2)
<---------
AHL20(2)
--------->
MYB59
<---------
AtMYB61
<-------
TEIL
--------
aatgagaaattaataaatatttttcttttaaa
aacaaaatttggttatatgtgacacaaatggaatggttgaagttgaaacgttcattttcaagttaggt
3535200
---------->
DOF2
--------->
ZAT2
<---------
ZAT2
----
NtERF2
<---------
At4g35610
---
ANAC58
--------->
At4g35610
---
bZIP60(2)
<---------
ARR14(2)
---
ANAC58
<---------
ANAC55(2)
->
MYB55(2)
<---------
ANAC58
--
AtMYB61
<---------
ANAC58
->
MYB111(2)
--------->
ANAC55(2)
<---------
AHL20(2)
->
MYB46(2)
<---------
DAG2
<---------
ANAC46
--------->
AHL20(2)
->
MYB52(2)
<----------
DOF2
--------->
ARR14(2)
----------->
GT1
->
MYB111(1)
<---------
ALFIN1
<-------
TEIL
<---------
MYB46(3)
->
MYB59
--------->
MYB46(3)
--------->
CCA1(2)
<---------
TOE2(3)
------>
ZmHOX2a(1)
ggcatactctaaaattgaatgaacaattgaacatccaccagcttttttcagagatgcgtagctgcaaagtcttgctaatgtttgttaaataaatcctagt
3535300
<--------
HAHB4
--------->
AHL20(2)
-------->
ATHB1
*
TSS
<----
--------->
ATHB51
<---------
AHL20(2)
--------->
ATHB12
----------->
GT1
<-------
<---------
ICU4
---------->
DOF2
--------->
AHL20(1)
<---------
AHL20(2)
--------->
CCA1(2)
--------->
AHL20(2)
--------->
ICU4
------>
ZmHOX2a(1)
<---------
ARR11(3)
<---------
AHL20(1)
<---------
ATHB12
---------->
DOF2
--------->
AHL20(2)
--------->
YAB1
<---------
ATHB51
---------->
DOF2
--------->
ARR11(1)
--------->
TOE2(3)
----------->
GT1
------------>
CBF
--------->
TOE1(2)
--------->
YAB1
<---------
ICU4
atgtagaaaaataatccaaattctaatgcaattatttgctaaatcctacaaaagtatatactataaagatttgagaaagaaataaac
attaaattatgtg
3535400
<---------
YAB1
<-------
GAMYB
----------->
GT1
<---------------
AGL15
--------->
At5g28300
<------
MYB46(1)
<-----------------
AG
----------->
GT1
<------
MYB83
====================================
MADS_MADS
<---------
MYB46(3)
<-----------------
AGL1
<---------
YAB1
<---------
WOX13(1)
<---------
AHL20(1)
--------------->
AGL15
<---------
YAB1
--------->
YAB1
<---------------
AGL15
-------->
HAHB4
--------->
YAB1
<---------
ARR11(3)
--------->
YAB1
--------->
MYB59
<---------
YAB1
--------->
ZAT6
<-----------
GT1
<-----------------
AGL3
<-
----------->
GT1
<---------
MYB46(3)
---------->
DOF2
--------->
AHL20(1)
----------------->
AGL3
<-
---
TEIL
--------->
ICU4
--------->
YAB1
----------->
GT1
<-----------
GT1
<-----------------
AGL2
<-
--
ANAC46
--------->
ATHB12
<---------
AHL20(2)
--------->
AHL20(2)
----------------->
AGL2
-----
catatgtaaaatgattgttggttataatactaaataataaagtttataacaatattttacaaatttggaagttgcaactataaatggtaaattcggtcct
3535500
--------->
TOE2(2)
-------->
P
------>
MYB83
------>
NtERF2
<---------
MYB59
--------->
LBD16
<---------
MYB55(2)
--------->
ANAC58
--------->
MYB46(3)
--------->
ANAC46
<---------
MYB111(1)
--------->
ANAC58
--------->
ANAC46
------>
ZmHOX2a(2)
--------->
ANAC58
--------->
ARR14(1)
--------->
ANAC58
<------
ZmHOX2a(2)
--------->
MYB46(3)
--------->
CCA1(2)
<---------
MYB59
--------->
ARR11(1)
<---------
At4g35610
--------->
ARR11(3)
--------->
At4g35610
--------->
At4g35610
<---------
ARR11(3)
<------
MYB83
-------->
P
<---------
At4g35610
<---------
ARR14(2)
<------
MYB46(1)
------>
MYB46(1)
--------->
ARR14(2)
<---------
MYB46(3)
--------->
TOE1(2)
--------->
AGP1
---------->
DOF2
<---------
AtMYB61
------>
MYB83
----------->
ARR10
<----------
ID1
<--------
P
<---------
MYB46(2)
--------->
At5g28300
--------
TOE2(3)
<-----------
RAV1(1)
------>
MYB46(1)
----------->
GT1
-
--------
YAB1
<---------
ANAC58
<---------
MYB111(1)
------->
GAMYB
<
--------
TOE1(3)
<---------
ANAC58
<---------
MYB111(2)
<---------
ALFIN1
---------->
DOF2
<
->
ZmHOX2a(1)
<---------
ANAC46
<---------
MYB52(2)
-------->
P
--------->
MYB52(1)
<------
taagattagaagacaaagaagagtcgtgttggtgagctaactacccaacctgtgaagctacccccattctctctcaacg
gtaaagatccgccattttcac
3535600
<---------------
AGL15
--------------->
AGL15
<-----------------
AGL3
<-----------------
AGL2
<----
<-----------------
AG
-----
------>
ZmHOX2a(2)
<---------
ARR14(2)
------
<---------
ARR14(2)
------->
TEIL
<-----
------>
ZmHOX2a(2)
<---------
AGP1
<---------
ARR11(1)
<---------
ARR14(2)
-------->
GLK1(1)
--------->
ARR14(2)
<-----------
ARR10
--------->
ARR14(2)
------
ZmHOX2a(2)
--------->
ARR11(3)
--------->
ARR14(2)
<---------
MYB52(1)
---------
GLK1(1)
<---------
ARR11(3)
<---------
CCA1(2)
--------->
TOE2(3)
----
-----
GT1
<---------
CCA1(2)
<---------
MYB46(3)
<-----------------
AGL1
--------->
MYB52(2)
cgatctctgtttcttctcgtttggatctttggaaattttagagtttgttcgttctctctcgtatctcattttggaattgaatcgttagtggatttgatcg
3535700
<
<-
------>
ZmHOX2a(2)
--
--------->
ICU4
--------->
ARR14(2)
=========
-----
HSFB2a(2)
<---------
ARR11(3)
<------
ZmHOX2a(1)
---->
HSFB2a(2)
<---------
ARR14(2)
<---------
ANAC58
>
ZmHOX2a(2)
<---------
ZAT6
<---------
AGP1
<---------
ANAC46
----
LBD16
<---------
ANAC58
<---------
LBD16
<-----------
GT1
<---------
ANAC58
----->
LBD16
<---------
ANAC58
<-----------
GT1
<---------
YAB1
----------------
ggaaatgagtgttttcgcgttcgattagtgtttatcagtctctggatctgtgattttgattttgttttctccag
ttttcgttttgaa
atggcgaggaaga
3535800
<---------
TOE1(3)
------>
ZmHOX2a(2)
<-------
TEIL
<---------
REM1(1)
<------
ZmHOX2a(2)
<------
MYB46(1)
--------->
AGP1
<---------
MYB46(3)
--------->
ARR14(2)
<------
MYB83
--------->
YAB1
<---------
MYB46(3)
<-----------
HVH21
<---------
AtMYB61
==============
HOX2a_HOX2a
--------->
MYB111(2)
===============
HOX2a_HOX2a
--------->
MYB55(2)
<---------
HSFB2a(2)
<---------
ARR14(2)
<---------
DEAR3(1)
--------->
HSFB2a(2)
<---------
GLK1(2)
------
ZmHOX2a(2)
--------->
MYB46(2)
<----------
DOF2
------>
ZmHOX2a(1)
--------->
AHL20(2)
--------
ARR11(3)
--------->
MYB111(1)
--------->
DAG2
--------->
At4g35610
<---------
TOE2(3)
------->
ARR11(3)
<--------
P
--------->
HSFB2a(1)
--------->
ARR11(3)
<-----------
RAV1(2)
======
HOX2a_HOX2a
<---------
MYB55(1)
---------->
DOF2
<---------
ARR11(3)
<---------
MYB52(1)
-------->
ANAC81
---------->
DOF2
<---------
HSFB2a(1)
---------->
DOF2
--------->
At4g35610
<-
agatcagagagtatgactcaaagaggttggtgaaggaacatttcaaaaggctttctggcaaagagcttcctatcagatccgttcag
gtttaaatctgttt
3535900
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AGI:
At1g10660.1
Description:
similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G62960.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO64308.1)
Range:
from: 3532429
to: 3535132
Orientation: Forward
Links:
TAIR
MIPS
AGI:
At1g10670.1
Description:
ACLA-1 (ATP-citrate lyase A-1). similar to ACLA-3 (ATP-citrate lyase A-3) [Arabidopsis thaliana] (TAIR:AT1G09430.1); similar to ACLA-2 (ATP-citrate lyase A-2) [Arabidopsis thaliana] (TAIR:AT1G60810.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO66107.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN70448.1); similar to ATP citrate lyase b-subunit [Lupinus albus] (GB:CAC86996.1); contains InterPro domain ATP-grasp fold, succinyl-CoA synthetase-type (InterPro:IPR013650); contains InterPro domain Succinyl-CoA synthetase-like (InterPro:IPR016102); contains InterPro domain ATP-grasp fold, subdomain 2; (InterPro:IPR013816
Range:
from: 3535388
to: 3538282
Orientation: Forward
Links:
TAIR
MIPS
Please cite the corresponding
publications
when using AthaMap.
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