Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                        <----------DOF2                                             ------>ZmHOX2a(1)                    <---------ZAT18 <--                                          ------>ZmHOX2a(1)                     <---------ZAT2   <--- ------>ZmHOX2a(1)                    --------->ARR14(2)                        --------->At4g35610 --------->RAV1(2)    ------->TEIL    ------->TEIL     <-----------HVH21        <---------At4g35610 ->DOF2    ----------->GT1            <---------ARR14(2)   <---------At4g35610  --------->ZAT2   ----   ctcctgcaatgtattgcaaaaatgtatcaattcacacatgaatcctcctaagaaacttgtcagccaatataaactaggcctaagctcgctctatggaaca  3180000                              <---------ARR14(2)                              --------->GLK1(2)                                ----------->RAV1(2)                              --------->ARR14(2)                              -------->P                              <---------ARR11(1)                             ------->GAMYB                              --------->ARR11(3)                            --------->MYB46(3)                              <---------ARR11(3)                            <---------MYB111(2)                         --------->ANAC58                                   <---------MYB55(2)      -                         --------->ANAC58                              --------->ANAC58           <--                 <---------ICU4                                        <---------ANAC55(2)       <---   --------->At4g35610   --------->AtLEC2                              --------->ANAC58        ------   <---------At4g35610 <-----------RAV1(2)                             --------->ANAC46       ------- -------ICU4    <---------ATHB12                     <---------ZAT6    --------->ANAC55(2)    ------- ------YAB1   --------->WOX13(1)              --------->ZAT14          --------->ANAC55(1) --------->DEAR3(1) ----->ICU4 <---------ATHB12 <---------CCA1(2)<---------ZAT14       --------->ARR14(2)    --------->DEAR3(2)   taattagctgtgaaatcaatcaatgccaggcaaatcttgaaggaacagagcagtagtataagaaattacagacacgcaacaacctgcaatacaccgacga  3180100                                                                         <---------ALFIN1            <---------ANAC58                                            <---------ZAT18  <---------ANAC58                                                      <---------ZAT14  <---------ANAC58                                                      --------->ZAT14 <---------ZAT18                                                  --------->MYB52(1) --------->SPL7                                                   <-----------GT1 --------->ZAT14                                                <---------MYB52(2) --------->ABI4(2)                                             --------->ANAC46 -------->ALFIN1    <---------ANAC46                           --------->ANAC58 -------DEAR3(2)  <-------GAMYB  --------->CCA1(2)             --------->ANAC58 ------DEAR3(1)  <-----------RAV1(1)                         ------->GAMYB >NtERF2------>ZmHOX2a(1) <---------LBD16                  --------->ANAC58 ---->HVH21--------->ZAT2------->TEIL <---------GLK1(1)    --------->ANAC58                  <-------TEIL -->DEAR3(1)<---------ANAC58--------->LBD16     ------->TEIL--------->MYB46(3)      <---------ZAT14   cggtgcggtccttagcttgctgttgtgaaccggagaaacgagttccgatgtactcaatggcaaccaagtaacgctgcactctagggtttactgggttcat  3180200                    <---------ZAT2     <-----------TGA1            <----------DOF2                    <---------At4g35610<-----------HVH21          --------->TOE2(3)                    --------->ZAT2    --------->ANAC46      --------->ANAC58              <---------ARR14(2)<---------GLK1(2)           --------->ANAC46          <------NtERF2     <---------At4g35610             --------->ANAC58                     ----       --------->RAP2.6(3)  ------>ZmHOX2a(1)          <---------GLK1(2)                   ------>ZmHOX2a(1)   ggactccaagtcggccaatccctgctgttcctctgattcttcgtcactaaatccctcgattctcgcaacctttgagagtctctcgagtgattcctcacta  3180300                                                                      --------->DEAR3(1)                                                                   <---------ALFIN1                                                             <---------ARR11(3)                                                             --------->ARR11(3)                                                            --------->GLK1(1)                          --------->MYB52(1)                <---------GLK1(1)             <------ZmHOX2a(1)                            --------->YAB1                      ------- ----->At4g35610       <---------GLK1(2)                 <---------YAB1                       <------   gctgtacaatcgagaggatgcttcagattatcggacatgactcactcactcactgatttatgatatctcacaccgtctcaagctcagtgccaatgtctag  3180400                                                                                                    -                                                                                                    <                        <---------AtLEC2                                               <---------AHL20(2)                  <---------ANAC46                                              <---------ATHB12    -                  <---------ANAC58        --------->YAB1          <xxxxxxxxxxxxxxxxsmallRNA(se3)    <     <---------TOE2(3) *TSS<---------MYB46(3)                     <------MYB46(1)--------->YAB1     < -->HSFB2a(2)     <---------ANAC58     --------->WOX13(1)         <------MYB83--------->WOX13(1)    - ---HSFB2a(2)    <------NtERF2        --------->AHL20(2)  <----------DOF2   ------------>CBF     ----   agggtttaagaaatatggtgtcgtttggatggatgctcgattaatcaaatttcggtttagctttcatttggtatgctctccaatcatattttttcagatt  3180500                                                                 --------->ZAT18                                                               xxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                                               xxxxxxxxxxxxxxxx>smallRNA(s)                                                             <xxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                                             <xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                             xxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                            <xxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                                            xxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                                            <xxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                                            <xxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                                           <xxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)              <---------YAB1                             <---------ZAT18            -------->HAHB4                               <---------ZAT14            --------->YAB1                               --------->ZAT14            <---------ICU4                             ------->PIF5           <---------ATHB51                            <-------PIF5  --------->ANAC58           --------->ICU4                              <xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)         --------->YAB1                            <xxxxxxxxxxxxxxxxsmallRNA(s)         <---------ICU4                           --------->ANAC58   --------->ANAC58     <-----------GT1                              <xxxxxxxxxxxxxxxxsmallRNA(i) -------->ARR11(3)                        <xxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                 <xxxxxxx ---------AHL20(2)                        <xxxxxxxxxxxxxxxxxsmallRNA(se3) xxxxxxxxxxxxxxxx>smallRNA(i) -------->AHL20(1)                        <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)------>NtERF2<xxxxxxxxx ---------ARR11(3)                       <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)<---------ATERF1(1) ---------AHL20(1)              <---------MYB46(3)--------->ANAC58xxxxxxxxxxxxxxxxxxxx>smallRNA(le3) -------->AHL20(2)       <-----------GT1 <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)<---------DEAR3(1) ----->AHL20(2)    --------->ATHB12 --------->ATHB12 <xxxxxxxxxxxxxxxxsmallRNA(s)     ---------->DOF2   aatatattcactaattatgaatgattttaactatttgttgatgggatgagccaagcccgtgcagtagtgcaacgcatgggcgactcgcgaaagcccagat  3180600                                                           <xxxxxxxxxxxxxxxxxsmallRNA(fl3)                                                           <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                                           <xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                                                           --------->PCF2                                                          <-----------TCP11(1)                                                          xxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                                         <xxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                                        <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                                       <---------At4g35610                                                 --------->ALFIN1                                               <---------ANAC46   xxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                               --------->ALFIN1  xxxxxxxxxxxxxxxxxxxxx>smallRNA(l2)                                             <---------ANAC46 <---------ALFIN1                                             <---------ANAC58 ----------->RAV1(1)                                      xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                     <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)             --------->ZAT18         <xxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                          <--             <---------ZAT18         <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                        ---        <xxxxxxxxxxxxxxxxsmallRNA(fl3)xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(l2)                  <-------       --------->YAB1                xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)    <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)       --------->TOE2(3)            <---------ZAT6     --------->At4g35610 <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)     <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)    <---------ANAC58<xxxxxxxxxxxxxxxxxxxxsmallRNA(se3)   <--  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)    --------->ARR11(3)<xxxxxxxxxxxxxxxxsmallRNA(s)    <------- --------->ANAC58        <----------DOF2   xxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                <xxxxxxx --------->ANAC58<----------DOF2    <xxxxxxxxxxxxxxxxxxxsmallRNA(se3)   --------->ARR11(3)   -------- xxxxxxxxxxxxxxxxxxxsmallRNA(se3)<xxxxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)<---------RVE1(1)   xxxxxxxx xxxxxxxsmallRNA(i)  ---------->ID1 ----------->GT1----------->TCP11(1) <---------ARR11(3) <xxxxxxxxx   agcaagctatcttagtgggctttctccctttaaaaatagagttaatatcgtgtgggccgatggcccacatatcagatattaaactgataagaacagatac  3180700       ------>ZmHOX2a(2)     --------->ARR11(3)     <---------ARR11(3)  <xxxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3) <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2) <xxxxxxxxxxxxxxxxsmallRNA(se3)                                       --------->YAB1 <xxxxxxxxxxxxxxxxsmallRNA(si3)                                --------->AHL20(1) <xxxxxxxxxxxxxxxxsmallRNA(fl3)                                <---------AHL20(1) <xxxxxxxxxxxxxxxxxsmallRNA(si3)                            --------->AHL20(2) -------ZAT18         <------NtERF2                       <----------DOF2 ------>ZAT14     <----------ID1                          ==========================bZIP_DOF --GLK1(2)       --------->DAG2                           --------------->AGL15 -------ZAT14   <xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) --------->ZAT2   <---------YAB1 --ARR14(2)     ---------->DOF2        =============================================bZIP_DOF xxxxxxxxxxxxxxsmallRNA(si3)           ---------->DOF2   --------->TOE2(3) ->ARR14(2)    ---------->DOF2   --------->ATHB12   --------->At4g35610 xxxxxxxxxx>smallRNA(si3)---------->DOF2            <---------At4g35610   <---------TGA1a xxxxxxxxxxxxsmallRNA(si3)      <---------YAB1      <---------ZAT2<---------AHL20(2)   tacacttgatcttagccaaaaggccgagaaaggtatgatttgaaagtgagacccagcttcctttatatattatcagacttgggagacgttctcttctact  3180800                                                                                <---------ANAC58                                                                                <---------ANAC58    <                                                               --------->HSFB2a(1)                 --                                                               <---------HSFC1(2)                  <-                                                               <---------HSFB2a(1)                ---                 --------->AtMYB61              <---------ANAC58                <---------ANAC46  <--        <---------PCF2             ---------->DOF2       --------------------->WRI1               ---       <----------ID1       ---------->DOF2     <---------ANAC58--------->KAN4(2)                <---     --------->ALFIN1     <---------YAB1    <---------MYB52(1) --------->HSFC1(2)    ------->TEIL----   tgtcgatgtgggacaaaaaccaaaacttatgaaagagcaaagaacagtttgcttagtttctgagaaaattccgaacacatttgtgtgcatcttcttctaa  3180900  Previous    Next  AGI:  At1g09800.1    Description:  tRNA pseudouridine synthase family protein. similar to tRNA pseudouridine synthase family protein [Arabidopsis thaliana] (TAIR:AT3G06950.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO46965.1); contains InterPro domain tRNA pseudouridine synthase; (InterPro:IPR001406) Range:  from: 3176885    to: 3180423    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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