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   Position
Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
 
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                                                                                    <---------ARR11(3)
                                                                                --------->YAB1
                                                                             --------->DAG2
                                                                            ---------->DOF2
                       <---------ZAT14                                  <----------ID1
                       --------->ZAT14                                 ----------->GT1             -
-------->GT1  --------->YAB1                           ---------->DOF2----------->GT1 ------>ZmHOX2a(2)
>CCA1(2)     <---------ATHB12              ---------->DOF2         ---------->DOF2  --------->ARR11(3)
 
ttgtaaattctaactaatcaaaacactgcaatccaatttccaagaagaaagaagtgagtaaagaacagaagaaaggggaaaaagcatgatctggtttcaa  3140000
                 --------->ANAC58
                 --------->ANAC58
               --------->MYB46(3)
       --------->LBD16
       ----------->GT1                             --------->ICU4         >>>>>>>>>TBF1
      --------->LBD16    ------->TEIL          <---------RAP2.6(3)     >>>>>>>>>TBF1
      --------->ANAC46<---------YAB1     ---------->DOF2            >>>>>>>>>TBF1       <-----------GT1
     <---------LBD16  <---------ATHB12 --------->ARR11(3)     >>>>>>>>>TBF1  >>>>>>>>>TBF1
-------->AHL20(2)-------->P          <---------ZAT6<---------YAB1>>>>>>>>>TBF1   ----------->GT1<---
 
aattaaaacccggaaaaaacaacccatgaatgttgaattagagataatgcagacatgatggtgaagaagaagaagaagaagaagaagtaattcaccagag  3140100
                                                                                                ----
                                                                                             -------
                                                                                             <------
                                                                                             <------
                                                                                            <-------
                                                                                         --------->ALFIN1
                                                                                        ------->MYC3
                                                                                        <-------MYC2
                                                                                        <-------MYC3
                                                                  --------->ANAC58      ------->MYC2
                                          --------->CCA1(2)       <---------DEAR3(1)   <---------ANAC58
      --------->ALFIN1            <---------At4g35610             --------->ANAC58     <---------ANAC58
   --------->ATHB12               --------->At4g35610    --------->MYB52(2)   --------->ANAC58  ----
 --------->TOE2(3)               ------->TEIL          <--------P--------->SPL7 ---------->DOF2 <---
---ZmHOX2a(1)           --------->At4g35610      --------->YAB1--------->ZAT18--------->ANAC58  <---
 
gaaacatcagtggaggtcattttcacgagcagaatgtagctgaagagacgaataataggttagtagggcacggcgaagagcaagaaagaaacgtgctgct  3140200
    ---------->DOF2
<---------ANAC46
----->At4g35610
-->At4g35610                                                                    <---------YAB1
---ZAT2--------->At4g35610                                                   <---------YAB1
---At4g35610                                                       <---------ZAT14
----RAV1(1)                                                       <----------DOF2
----->ZAT2                   <<<<<<<<<TBF1                      ------>ZmHOX2a(1)
------ZAT2            <---------YAB1                         ------>ZmHOX2a(1)<---------AHL20(2)
------At4g35610     <---------At4g35610            --------->ANAC46--------->ZAT14    ---------->ID1
 
gctgcgaagaagcagagagagagagatgattcttcttcaccaaaaaccctctcccctcgacttcctcctctttactgatttttatttttgtttttttttc  3140300
                                                                                    <---------AHL20(1)
                                                                                    --------->AHL20(1)
                                                                               --------->AHL20(1)
                                                                               <---------AHL20(1)
                                                                               <---------AHL20(2)
                                                         --------->AHL20(2)    --------->AHL20(2)
                                                        --------->AHL20(2)    <---------AHL20(2)
                  <---------MYB46(3)                    <---------AHL20(2)    --------->YAB1       <
                 --------->ALFIN1                     *TSS                --------->AHL20(2)       <
         ---------->DOF2                   --------->TOE2(3)         <----------DOF2<---------AHL20(2)
       --------->ANAC58                   ----------->GT1<---------AHL20(2)   --------->AHL20(2)   =
       --------->ANAC58          <---------YAB1<---------YAB1       --------->TOE2(3)             <-
     --------->MYB52(1)          ----------->GT1    <---------AHL20(2)    <---------AHL20(2) -------
 
acaagggcaaacgaaagaaggtggttcttaattgttatgttacaaatgttaatattgaatttaatttcaaacctttataaattatattatattccataaa  3140400
         <<<<<<<<<<WRKY38         <---------ANAC58
         <<<<<<<<<<WRKY26         <---------ANAC58
         <<<<<<<<<<WRKY43       <-----------GT1
  <----------DOF2          <---------YAB1                                                 --------->AHL20(2)
  <---------DAG2           --------->AHL20(2)                                             <---------AHL20(2)
 --------------->AGL15     <---------AHL20(2)                                         <---------AHL20(2)
 ==================================MADS_MADS                                          --------->AHL20(2)
 <---------DAG2           --------->AHL20(2)                                         <---------AHL20(2)
----------------->AGL1    --------->AHL20(1)         --------->ANAC58                <---------AHL20(1)
----------------->AG      <---------AHL20(1)         --------->ANAC58            <---------AHL20(2)
-----------------AG--------------->AGL15      <---------AHL20(2)                 --------->AHL20(2)
-----------------AGL1    --------->YAB1    --------->AHL20(2)                   --------->AHL20(2)
===================================MADS_MADS<---------YAB1                   --------->AHL20(2)
----------GT1      --------->TOE2(3)     --------->ICU4                      --------->ICU4        <
-->AHL20(2)     <-----------GT1 <---------AHL20(2) ---------->DOF2  <---------YAB1   --------->AHL20(2)
 
tttacctttttggtcaaattttccataaatataatttacttgtgaatattatatgaaagcaaaatgtttttatctttgaaatatttaatttaattaaaaa  3140500
                                                                    <----------DOF2
                   <---------ANAC58                                 <---------------AGL15
                   <---------ANAC55(2)                             --------->TOE2(3)
                   <---------ANAC46                                <---------DAG2
                   <---------ANAC58                                <-----------------AGL3
            <---------MYB59                                     <-----------GT1
    <---------ANAC55(2)                              --------->ANAC46                       --------
  --------->AHL20(2)                          ------->TEIL    <---------WOX13(1)  <---------DAG2
---------ICU4      --------->ANAC55(2)    <---------TOE2(3) --------->ATHB12      <----------DOF2
 
actaattacatatagcctaatttcgtatttcatatgtagttaactaatgtatatatccacaattgattaacctttttatggctaactttattcactagta  3140600
                                                                            <---------At5g28300
                                                                           <-----------GT1
                                                                           --------->MYB52(1)
                                                                        --------->YAB1
                                                                        <---------ICU4
                                                                    ----------->GT1
                                                                    <---------YAB1
                                        <---------AHL20(2)        --------->YAB1
                                       --------->AHL20(2)         <---------ICU4
                                       <---------AHL20(2)        --------->ICU4
                                       <---------AHL20(1)        <---------ATHB51
                                    <---------ICU4               <---------ATHB12
                                   <---------ATHB51         --------->TOE2(3)<------------MYB.PH3(1)
                                   --------->ICU4<---------HSFB2a(2)--------->ICU4
 <----------DOF2                   <---------AHL20(2)--------->ANAC58  <---------YAB1       --------
 <---------MYB52(1)                --------->AHL20(2)--------->ANAC46--------->YAB1   --------->YAB1
->YAB1        --------->ANAC46     <---------ATHB12  --------->ANAC58-------->HAHB4   --------->AHL20(2)
 
atccctttgttatattcacacagtttttgtattcacaaataattaatttgttctccaagtaaacatcaataatgataataaccgtttaataaaaaataaa  3140700
                                                       <---------ARR11(3)
                                                       --------->AHL20(1)
                                                       <---------AHL20(1)
                       <---------O2                    --------->ARR11(3)
                       ===================================bZIP_DOF
                       --------->O2                 >>>>>>>>>>GT-3b
                       <---------TGA1a           ----------->GT1                        ------>ZmHOX2a(1)
                       --------->TGA1a         ---------->DOF2                        ------>ZmHOX2a(2)
                     <---------ALFIN1    --------->MYB52(1)                   <---------ALFIN1
                    --------->ZAT18  <---------------AGL15                   --------->ZAT18
                    <---------ZAT18  --------------->AGL15                   <---------ZAT18    <---
                  <---------At4g35610----------------->AGL1                --------->PCF2 <---------CCA1(2)
->AHL20(2)        --------->PCF2    ----------------->AGL2                 <---------At4g35610  <---
 
aacaatttgagcccatatttgagcccacttgagcctatgtcccttaacagaaaagaaaaatatttgagcccatatttgagcccacttgatcctatatccc  3140800
             --------->ARR11(3)                                                     <---------ANAC58
             <---------AHL20(1)                                                    <----------------
             --------->AHL20(1)                                                 <----------DOF2
       ----------->GT1                                                          <---------DAG2
     ---------->DOF2                                                         ------>MYB46(1)
 <---------HSFB2a(2)                                     --------->YAB1    --------->AtMYB61
 --------->HSFB2a(2)                   <---------YAB1    -------->HAHB4  *TSS------>MYB83       <---
----------------->AGL1       <---------DAG2           --------->YAB1    <---------ALFIN1  <---------
-------DOF2  <---------ARR11(3)      <---------At4g35610<---------YAB1<---------At5g28300 ==========
------DAG2>>>>>>>>>>GT-3b    <----------DOF2       --------->YAB1    <-----------GT1<---------ANAC58
 
tttaccagaaaagaaaaatatttgagcccatacttttcgcttctgataagcgtagaataataatagtcgaatttaccaccttccttttcgttcctttttt  3140900
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AGI:  At1g09700.1   
Description:  HYL1 (HYPONASTIC LEAVES 1). similar to DRB3 (DSRNA-BINDING PROTEIN 3), double-stranded RNA binding [Arabidopsis thaliana] (TAIR:AT3G26932.1); similar to DRB3 (DSRNA-BINDING PROTEIN 3), double-stranded RNA binding [Arabidopsis thaliana] (TAIR:AT3G26932.2); similar to DRB2 (DSRNA-BINDING PROTEIN 2), double-stranded RNA binding [Arabidopsis thaliana] (TAIR:AT2G28380.1); similar to RBP2 protein [Brassica oleracea var. capitata] (GB:CAC05659.1); contains InterPro domain Double-stranded RNA-binding-like; (InterPro:IPR014720); contains InterPro domain Double-stranded RNA binding; (InterPro:IPR001159)
Range:  from: 3137769    to: 3140355    Orientation: Reverse
Links:  TAIR  MIPS 
 
AGI:  At1g09710.1   
Description:  DNA binding. similar to myb family transcription factor [Arabidopsis thaliana] (TAIR:AT1G58220.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO61600.1); contains InterPro domain Myb transcription factor (InterPro:IPR015495); contains InterPro domain Homeodomain-related; (InterPro:IPR012287); contains InterPro domain SANT, DNA-binding; (InterPro:IPR001005); contains InterPro domain Homeodomain-like (InterPro:IPR009057); contains InterPro domain Myb, DNA-binding (InterPro:IPR014778)
Range:  from: 3140874    to: 3144372    Orientation: Forward
Links:  TAIR  MIPS 
 
 
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