Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100      ------>ZmHOX2a(2)   <---------GLK1(1)   <------ZmHOX2a(2)  <---------ARR11(3)  --------->ARR11(3)                                                   <---------AHL20(2)  <-----------ARR10                                                    --------->AHL20(2)  <---------AGP1    --------------->AGL15                             --------->YAB1 ------->DOF2  <---------HSFC1(2)                           <-----------GT1            --------->ZAT6 --->YAB1      --------->HSFC1(2)  <---------YAB1          --------->WRKY38(1)    <---------KAN4(2)   caaagatctcagtgagatggttctatagatagtatttctgatttgttagtatattagagaattgaccatctattaaaataagagaatgaacactatttga  3076200                    --------->ATHB12                    <---------ICU4                    --------->YAB1                   <---------YAB1                 --------->YAB1                 <---------ICU4                    <---------TOE1(2)                <---------ATHB12                 --------->TOE2(2)                --------->ICU4          ---------->DOF2                              <---------AHL20(1)           --------->ANAC58  --------->AHL20(2)  --------->TOE1(2)                   <---------AHL20(2)           --------->ANAC55(2)         --------->YAB1                                --------->AHL20(2)           --------->ANAC55(1)        <---------YAB1   <------ZmHOX2a(2)         <---------ICU4           --------->ANAC58  <---------AHL20(2) --------->YAB1                  <---------YAB1           --------->ANAC46<----------DOF2     <---------YAB1                 --------->YAB1           <---------ANAC55(2)   <---------ICU4<---------ATHB12              <-------TEIL          <-   taaaacaatacatacgcaattatcattgtctttaatttttatcaaagtaatcatacgatcgactatttgtatgcaaaaattcatcattttatttgcaaaa  3076300                                                                                                    <                                                                                                   --                                <---------ANAC46                                           <---------ICU4                              <---------ANAC58                                             --------->YAB1                              <---------ANAC46                                             --------->ATHB12                              <---------ANAC58                   ----------->RAV1(1)      <---------ATHB12                            <---------ANAC58                   --------->ZAT18            --------->ICU4                            <------MYB46(1)                    <---------ZAT18            <---------YAB1                            <---------ANAC58                <---------ANAC46            --------->YAB1          --------->YAB1    <---------ANAC46   <-----------RAV1(1)                     <---------AHL20(2) ---------ID1----------->GT1<------MYB83<-----------GT1--------->ICU4    <---------AHL20(2)-------->ATHB1   aaaaacaaacaaacatggtagaattgtatttggtgtgtgttttaacaaattgttgcaatgtttagtgcaacatatataatccactatatataatcattga  3076400                                        <---------ANAC55(1)                                        --------->ANAC55(2)                                         <          <---------AHL20(2)            <---------ANAC46                                            <     <---------TOE2(3)                  <---------ANAC55(2)                                         -   <---------AHL20(2)              --------->YAB1                                                   -   --------->AHL20(2)             --------->AHL20(2)                                               --  --------->ICU4                  <---------AHL20(2)               >>>>>>>>>>GT-3b  ---------->DOF2<-  <---------YAB1     --------->ANAC58 <---------ICU4            ----------->GT1  ----------->GT1   <- ---------ICU4       --------->ANAC58--------->ICU4      ----------->GT1        --------->DAG2<------ ------->ICU4 --------->AHL20(2)<----------DOF2 <---------YAB1---------->DOF2 ---------->DOF2<-------   cataattaatatttgattatatgaagcaatttctctttaattatgtgtttataaatatagggagaaaagaaaaatagagagaaaggtaaagagtagagct  3076500           --------->ANAC58           --------->ANAC58          <------NtERF2         <---------ATERF1(1)         ------>NtERF2        <---------DEAR3(1)        ----------->HVH21 --------->ARR11(1) ---------ICU4 --------ATHB1 -------->ATHB12                                                                           <---------ARR14(2) ------->HAHB4                 <---------HSFB2a(2)                            ------>ZmHOX2a(1)   <-- ------->ICU4      ----------->GT1                                           --------->TOE2(3)   ---- --------ATHB12   --------->DAG2          <---------GLK1(2)               <---------ARR11(3)   <----- --------YAB1     <---------TOE2(3)  --------->MYB52(1)                   --------->ARR14(2)   <----- ---At4g35610   ---------->DOF2--------->HSFB2a(2)                        <---------ARR14(2)  ------- --ZAT6 <---------ETT(2)  <---------KAN4(1)           ----------->GT1 --------->YAB1*TSS   --------->ARR14(2)   aatgattcgggcgacgctaaaaggttgaatgttcgagagaaacggagtctcagagactgtgaaaacaaaaaatcaaaatcctcagttacagacgatttgg  3076600 <---------ALFIN1             <---------ANAC58                                                 <----- -------ZAT18                 <---------ANAC58                     <----------DOF2             <----- ----->PCF5            <---------MYB52(1)                    ------>NtERF2                 --------->DEAR3(1) -MYB83             --------->SPL7                           --------->LBD16               --------->DREB2C(2) -MYB46(1)       <---------ANAC58                  ------>ZmHOX2a(1)       <------ZmHOX2a(1)------>NtERF2 -->MYB59        <---------ANAC58       ---------->ID1      --------->DEAR3(1)            --------->ORA47(2)   tcccctctcttctctctctgcgtccgtcttgtgcgtcgatttgtctccatctccttctctctccgcctactttctcaggactactccaattcgccgactt  3076700                                                                                      <---------ANAC58                                             <---------TOE2(3)             ------>NtERF2 ------------                                             <---------TOE1(3)            ----------->HVH21      <---       --------->ZAT14              --------->YAB1                        --------->WRKY12       ====    ------>ZmHOX2a(1)            <----------DOF2                        <---------At4g35610      <--- -----DOF2                 --------->bZIP60(1)                          --------->At4g35610  <------- ----DAG2              <---------WOX13(1)<----------DOF2     <----------DOF2          <---------ANAC58   tttctcctctgttctctgcatttggattgatgccactttaatactttgaggttctcactctctctttctctcttcgctgacttcgattgcttcagtaccc  3076800                   --------->YAB1           --------->ZAT2           --------->At4g35610       <-----------HVH21                                 <----------DOF2                     --------      ==============================bZIP_DOF            ------>ZmHOX2a(2)                   <------MYB46(1)      --------->TGA1a                                 <---------ARR11(3)                    <------MYB83 --->AtSPL3<---------At4g35610                        --------->ARR11(3)                   --------->MYB59 -------DOF2      <---------YAB1                     <------------------------ANAC81<-------GAMYB ===============bZIP_DOF                   <------ZmHOX2a(2)                    --------->CCA1(2)  <- ------DAG2<---------ZAT2<---------DAG2   --------->ARR11(3)         <<<<<<<<<MYB2 ----------->GT1 <- --ZAT18 <---------WRKY12<----------DOF2  <---------ARR11(3)      <---------AtMYB61<---------MYB46(3)   tttttctcaggtcagctacgatgatagctttattcagacaagaagatcaaagttttgatctttttgttttggttttcttaagagatggttaattaggtct  3076900      <----------DOF2    <---------At4g35610                                                                            <-  --------->ZAT14                                                                           <--------  <---------ZAT14                                                                           <--------  <---------ZAT18                                          <---------ICU4            --------->RVE1(1)  --------->ZAT18                                          --------->YAB1           <-----------ARR10 ->ARR11(3)                     --------->AHL20(2)        <---------ATHB12          --------->GLK1(2) --------ANAC58             <---------YAB1     --------->ATHB12                     --------->ARR11(3) --------ANAC58       <---------ZAT14         <---------YAB1 <-----------RAV1(1)    <---------ARR11(3)   tgagtgcgctgttttgaatcgttcttcagtgtgattaaacaattggttttgatttgactaatcatgttgccattaaactaagtgaaaatctctgcttttt  3077000                                                                     <---------At4g35610                                                           --------------->AGL15                                                           <---------------AGL15                                                           ========================================MADS_MADS                                                          <-----------------AGL2                                                          <-----------------AGL1                <---------WOX13(1)                        ----------------->AGL3                  ---              --------->ATHB12                           <-----------------AG      ==================             --------->ICU4                              ==========================================MADS_MADS             <---------YAB1                              <-----------------AGL1    <---------------AGL15 --------AHL20(2)                                    <---------TOE1(2)    ---------->DOF2   <-------- --DOF2     <---------TOE2(3)   <----------DOF2  <-----------GT1     --------->At4g35610    --------- -DAG2     --------->YAB1 --------->ATHB12 <----------DOF2<-----------------AGL3   --------------->AGL15   ttatattgcatattgatgattgagacattgatttcttttctatttctttatttcccagtttctaatttgggaactgaaaagttttctaatttaagcatta  3077100  Previous    Next  AGI:  At1g09530.1    Description:  PAP3/PIF3/POC1 (PHYTOCHROME INTERACTING FACTOR 3); DNA binding / protein binding / transcription factor/ transcription regulator. Identical to Phytochrome-interacting factor 3 (BHLH8) [Arabidopsis Thaliana] (GB:O80536;GB:Q9SBC5); similar to PIL6 (PHYTOCHROME-INTERACTING FACTOR 5), DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT3G59060.4); similar to PIL6 (PHYTOCHROME-INTERACTING FACTOR 5), DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT3G59060.2); similar to PIL6 (PHYTOCHROME-INTERACTING FACTOR 5), DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT3G59060.3); similar to phytochrome intera Range:  from: 3076584    to: 3079541    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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